MD11G1248100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr11
OG0019749
Physical Location & Seq
Forward (+)
36015016 .. 36017342
2327 bp
Loading structure...
UTR
Exon/CDS
Intron
MD11G1248100.v1.1.491

Sequence Viewer

Length: 240 bp
ATGGGTTTAGGGAGAAAGAGTAAGGGAGCAGCTTCCGATCACTTCCCTCTCTCCCTTCGAAACAATCGGTTTATAATCCCATTTAGCAGAGTCATGTCGCTTCCAAATGAAGAAAATGATAAGTCCTCTTCTTCTGATGCTCAGGGGATGGACAGAAGTCCCAGACAGCAATCTCTCTGTAATCATCGCCGGGAAAATATCGTGGTCATTTTGAGCTCGGATTCAGCCAGCATGTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

80

Amino Acids

8.85

Weight (kDa)

9.76

Isoelectric Point (pI)

74.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019749)

Species Orthologous Gene IDs
malus_domestica MD03G1071200.v1.1 MD06G1018000.v1.1 MD08G1049100.v1.1 MD11G1248100.v1.1 MD14G1169900.v1.1
pyrus_communis pycom02g22110 pycom03g05060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 74
AccB7I CCANNNNNTGG 1 cut(s) 234
AfiI CCNNNNNNNGG 1 cut(s) 234
AluBI AGCT 2 cut(s) 32, 216
AluI AGCT 2 cut(s) 32, 216
Alw21I GWGCWC 1 cut(s) 218
ApeKI GCWGC 1 cut(s) 29
AsuC2I CCSGG 1 cut(s) 191
AsuII TTCGAA 1 cut(s) 58
BanII GRGCYC 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 218
BbvI GCAGC 1 cut(s) 41
BccI CCATC 1 cut(s) 142
BcnI CCSGG 1 cut(s) 191
BisI GCNGC 1 cut(s) 30
BlsI GCNGC 1 cut(s) 31
Bme1390I CCNGG 1 cut(s) 191
BmrFI CCNGG 1 cut(s) 191
BmsI GCATC 1 cut(s) 127
BoxI GACNNNNGTC 1 cut(s) 156
Bpu10I CCTNAGC 1 cut(s) 141
Bpu14I TTCGAA 1 cut(s) 58
BpuMI CCSGG 1 cut(s) 191
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 1 cut(s) 234
BseGI GGATG 1 cut(s) 153
BseLI CCNNNNNNNGG 1 cut(s) 234
BseMII CTCAG 1 cut(s) 155
BseXI GCAGC 1 cut(s) 41
BsiHKAI GWGCWC 1 cut(s) 218
BsiSI CCGG 1 cut(s) 190
BslFI GGGAC 1 cut(s) 144
BslI CCNNNNNNNGG 1 cut(s) 234
BsmFI GGGAC 1 cut(s) 144
Bsp119I TTCGAA 1 cut(s) 58
Bsp1286I GDGCHC 1 cut(s) 218
Bsp143I GATC 1 cut(s) 37
BspCNI CTCAG 1 cut(s) 154
BspT104I TTCGAA 1 cut(s) 58
BssMI GATC 1 cut(s) 37
Bst6I CTCTTC 1 cut(s) 133
BstBI TTCGAA 1 cut(s) 58
BstC8I GCNNGC 1 cut(s) 229
BstDEI CTNAG 1 cut(s) 141
BstF5I GGATG 1 cut(s) 153
BstKTI GATC 1 cut(s) 40
BstMBI GATC 1 cut(s) 37
BstNSI RCATGY 1 cut(s) 235
BstPAI GACNNNNGTC 1 cut(s) 156
BstSCI CCNGG 1 cut(s) 189
BstV1I GCAGC 1 cut(s) 41
BtgZI GCGATG 1 cut(s) 170
BtsCI GGATG 1 cut(s) 153
Cac8I GCNNGC 1 cut(s) 229
CviAII CATG 2 cut(s) 94, 232
CviJI RGCY 3 cut(s) 32, 216, 227
CviKI_1 RGCY 3 cut(s) 32, 216, 227
DdeI CTNAG 1 cut(s) 141
DpnI GATC 1 cut(s) 39
DpnII GATC 1 cut(s) 37
Eam1104I CTCTTC 1 cut(s) 133
EarI CTCTTC 1 cut(s) 133
Ecl136II GAGCTC 1 cut(s) 216
Eco24I GRGCYC 1 cut(s) 218
Eco53kI GAGCTC 1 cut(s) 216
EcoICRI GAGCTC 1 cut(s) 216
EcoT38I GRGCYC 1 cut(s) 218
FaeI CATG 2 cut(s) 97, 235
FaiI YATR 3 cut(s) 74, 95, 233
FaqI GGGAC 1 cut(s) 144
FatI CATG 2 cut(s) 93, 231
Fnu4HI GCNGC 1 cut(s) 30
FokI GGATG 1 cut(s) 160
FriOI GRGCYC 1 cut(s) 218
Fsp4HI GCNGC 1 cut(s) 30
GluI GCNGC 1 cut(s) 30
HapII CCGG 1 cut(s) 190
Hin1II CATG 2 cut(s) 97, 235
HinfI GANTC 2 cut(s) 90, 221
HpaII CCGG 1 cut(s) 190
Hpy188I TCNGA 3 cut(s) 37, 136, 220
HpyAV CCTTC 1 cut(s) 65
HpyF3I CTNAG 1 cut(s) 141
Hsp92II CATG 2 cut(s) 97, 235
Kzo9I GATC 1 cut(s) 37
LmnI GCTCC 1 cut(s) 26
LpnPI CCDG 3 cut(s) 128, 175, 203
Lsp1109I GCAGC 1 cut(s) 41
LweI GCATC 1 cut(s) 127
MalI GATC 1 cut(s) 39
MboI GATC 1 cut(s) 37
MboII GAAGA 3 cut(s) 120, 122, 123
MhlI GDGCHC 1 cut(s) 218
MlyI GAGTC 1 cut(s) 99
MnlI CCTC 2 cut(s) 57, 136
MspI CCGG 1 cut(s) 190
MspR9I CCNGG 1 cut(s) 191
NciI CCSGG 1 cut(s) 191
NdeII GATC 1 cut(s) 37
NlaIII CATG 2 cut(s) 97, 235
NspI RCATGY 1 cut(s) 235
NspV TTCGAA 1 cut(s) 58
PfeI GAWTC 1 cut(s) 221
PflMI CCANNNNNTGG 1 cut(s) 234
PkrI GCNGC 1 cut(s) 31
PleI GAGTC 1 cut(s) 98
PpsI GAGTC 1 cut(s) 98
PshAI GACNNNNGTC 1 cut(s) 156
PsiI TTATAA 1 cut(s) 74
Psp124BI GAGCTC 1 cut(s) 218
SacI GAGCTC 1 cut(s) 218
SatI GCNGC 1 cut(s) 30
Sau3AI GATC 1 cut(s) 37
SchI GAGTC 1 cut(s) 99
ScrFI CCNGG 1 cut(s) 191
SduI GDGCHC 1 cut(s) 218
SetI ASST 2 cut(s) 34, 218
SfaNI GCATC 1 cut(s) 127
SfuI TTCGAA 1 cut(s) 58
SgeI CNNG 7 cut(s) 106, 155, 174, 202, 203, 214, 229
SstI GAGCTC 1 cut(s) 218
StyD4I CCNGG 1 cut(s) 189
TaqI TCGA 1 cut(s) 58
TfiI GAWTC 1 cut(s) 221
TseI GCWGC 1 cut(s) 29
TspDTI ATGAA 1 cut(s) 123
Van91I CCANNNNNTGG 1 cut(s) 234
XceI RCATGY 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.