MD08G1049100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0019749
Physical Location & Seq
Forward (+)
3834643 .. 3839117
4475 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1049100.v1.1.491

Sequence Viewer

Length: 258 bp
ATGAAGGAGAGGAGCAGGGAGATGGGCTCGAGTCGGGGAACGGCGGAAGAGATCTTCAGGGATTACAGTGGTCGGAGAACCGACGCCATCCACGCTTTAACTAACGAGAGAGAGGTCAAGCAAGGTTTCGTCCATTTCGGTCAACTTGGGTTACCCCCAACGTCCGGTAAGTTTTGGAGAATGTTGTGTTCGATGACCATAATCGAGAAGCTGATTACTGAGAGAAATCTGTTACTGGTCGTGATTGAGGGAGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

86

Amino Acids

9.7

Weight (kDa)

9.03

Isoelectric Point (pI)

48.85

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019749)

Species Orthologous Gene IDs
malus_domestica MD03G1071200.v1.1 MD06G1018000.v1.1 MD08G1049100.v1.1 MD11G1248100.v1.1 MD14G1169900.v1.1
pyrus_communis pycom02g22110 pycom03g05060

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 44
AcuI CTGAAG 1 cut(s) 40
AcyI GRCGYC 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 164
AluBI AGCT 2 cut(s) 211, 254
AluI AGCT 2 cut(s) 211, 254
Ama87I CYCGRG 1 cut(s) 28
AvaI CYCGRG 1 cut(s) 28
BanII GRGCYC 1 cut(s) 29
BccI CCATC 2 cut(s) 16, 95
BceAI ACGGC 1 cut(s) 57
BglII AGATCT 1 cut(s) 51
BmeT110I CYCGRG 1 cut(s) 28
BplI GAGNNNNNCTC 2 cut(s) 11, 43
BsaHI GRCGYC 1 cut(s) 84
BsaWI WCCGGW 1 cut(s) 164
Bsc4I CCNNNNNNNGG 1 cut(s) 164
Bse1I ACTGG 1 cut(s) 240
BseGI GGATG 1 cut(s) 87
BseLI CCNNNNNNNGG 1 cut(s) 164
BseMII CTCAG 1 cut(s) 210
BseNI ACTGG 1 cut(s) 240
BseRI GAGGAG 1 cut(s) 25
BsiHKCI CYCGRG 1 cut(s) 28
BsiSI CCGG 1 cut(s) 165
BslI CCNNNNNNNGG 1 cut(s) 164
BsoBI CYCGRG 1 cut(s) 28
Bsp1286I GDGCHC 1 cut(s) 29
Bsp143I GATC 1 cut(s) 51
BspACI CCGC 1 cut(s) 44
BspCNI CTCAG 1 cut(s) 211
BsrI ACTGG 1 cut(s) 240
BssMI GATC 1 cut(s) 51
BssNI GRCGYC 1 cut(s) 84
Bst4CI ACNGT 1 cut(s) 68
Bst6I CTCTTC 1 cut(s) 42
BstACI GRCGYC 1 cut(s) 84
BstDEI CTNAG 1 cut(s) 219
BstEII GGTNACC 1 cut(s) 150
BstF5I GGATG 1 cut(s) 87
BstKTI GATC 1 cut(s) 54
BstMBI GATC 1 cut(s) 51
BstMWI GCNNNNNNNGC 1 cut(s) 92
BstPI GGTNACC 1 cut(s) 150
BstX2I RGATCY 1 cut(s) 51
BstYI RGATCY 1 cut(s) 51
BtsCI GGATG 1 cut(s) 87
BtsIMutI CAGTG 1 cut(s) 73
CseI GACGC 1 cut(s) 92
CviJI RGCY 3 cut(s) 27, 211, 254
CviKI_1 RGCY 3 cut(s) 27, 211, 254
DdeI CTNAG 1 cut(s) 219
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
Eam1104I CTCTTC 1 cut(s) 42
EarI CTCTTC 1 cut(s) 42
EciI GGCGGA 1 cut(s) 59
Eco24I GRGCYC 1 cut(s) 29
Eco57I CTGAAG 1 cut(s) 40
Eco88I CYCGRG 1 cut(s) 28
Eco91I GGTNACC 1 cut(s) 150
EcoO65I GGTNACC 1 cut(s) 150
EcoT38I GRGCYC 1 cut(s) 29
FaiI YATR 1 cut(s) 200
FokI GGATG 1 cut(s) 74
FriOI GRGCYC 1 cut(s) 29
HapII CCGG 1 cut(s) 165
HgaI GACGC 1 cut(s) 92
Hin1I GRCGYC 1 cut(s) 84
HincII GTYRAC 1 cut(s) 143
HindII GTYRAC 1 cut(s) 143
HinfI GANTC 1 cut(s) 31
HpaII CCGG 1 cut(s) 165
Hpy166II GTNNAC 1 cut(s) 143
Hpy188I TCNGA 1 cut(s) 75
Hpy188III TCNNGA 2 cut(s) 205, 241
Hpy8I GTNNAC 1 cut(s) 143
Hpy99I CGWCG 1 cut(s) 86
HpyCH4III ACNGT 1 cut(s) 68
HpyCH4IV ACGT 1 cut(s) 161
HpyF10VI GCNNNNNNNGC 1 cut(s) 92
HpyF3I CTNAG 1 cut(s) 219
HpySE526I ACGT 1 cut(s) 161
Hsp92I GRCGYC 1 cut(s) 84
Kzo9I GATC 1 cut(s) 51
LmnI GCTCC 2 cut(s) 12, 251
LpnPI CCDG 3 cut(s) 43, 178, 221
MaeII ACGT 1 cut(s) 161
MaeIII GTNAC 2 cut(s) 150, 231
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MboII GAAGA 2 cut(s) 46, 59
MflI RGATCY 1 cut(s) 51
MhlI GDGCHC 1 cut(s) 29
MlyI GAGTC 1 cut(s) 40
MmeI TCCRAC 1 cut(s) 53
MnlI CCTC 3 cut(s) 3, 106, 241
MseI TTAA 1 cut(s) 98
MspI CCGG 1 cut(s) 165
MwoI GCNNNNNNNGC 1 cut(s) 92
NdeII GATC 1 cut(s) 51
PaeR7I CTCGAG 1 cut(s) 28
PleI GAGTC 1 cut(s) 39
PpsI GAGTC 1 cut(s) 39
PspEI GGTNACC 1 cut(s) 150
PspXI VCTCGAGB 1 cut(s) 28
PsuI RGATCY 1 cut(s) 51
SaqAI TTAA 1 cut(s) 98
Sau3AI GATC 1 cut(s) 51
SchI GAGTC 1 cut(s) 40
SduI GDGCHC 1 cut(s) 29
SetI ASST 5 cut(s) 117, 127, 164, 213, 256
Sfr274I CTCGAG 1 cut(s) 28
SlaI CTCGAG 1 cut(s) 28
SmlI CTYRAG 1 cut(s) 28
SmoI CTYRAG 1 cut(s) 28
SsiI CCGC 1 cut(s) 44
TaaI ACNGT 1 cut(s) 68
TaiI ACGT 1 cut(s) 164
TaqI TCGA 3 cut(s) 29, 191, 204
TaqII GACCGA 1 cut(s) 128
Tru1I TTAA 1 cut(s) 98
Tru9I TTAA 1 cut(s) 98
TscAI CASTG 1 cut(s) 73
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 73
XhoI CTCGAG 1 cut(s) 28
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.