MD06G1131100.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0019742
Physical Location & Seq
Reverse (-)
27471438 .. 27473625
2188 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1131100.v1.1.491

Sequence Viewer

Length: 228 bp
ATGGATCAACCAACACATGGCACTCATGACCTTTTACAAAACTTAATTTTACACTTGGCATTATTTTGCACAAGTGAATACACCAATTTAAAACAATCTTATTCTAAGCTTTTCAGCTCAACACTTATAATTCAACACAACATCTGTTCCTGGACCTATTTGTTGCGGCAGCAGATACAACGTCATCCACATTGGAATGGGCAATGGCTGAGCTACTCAGCAACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.87

Weight (kDa)

7.89

Isoelectric Point (pI)

47.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0019742)

Species Orthologous Gene IDs
malus_domestica MD06G1131100.v1.1 MD13G1115800.v1.1
rosa_chinensis RchiOBHm_Chr4g0430051
rosa_laevigata RLG00000007009
rosa_rugosa Rorug04G0239800
rosa_samantha Rh4BG303300 Rh4CG318800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 128
AccB7I CCANNNNNTGG 1 cut(s) 17
AciI CCGC 1 cut(s) 166
AclWI GGATC 1 cut(s) 12
AfiI CCNNNNNNNGG 1 cut(s) 17
AgsI TTSAA 1 cut(s) 134
AjnI CCWGG 1 cut(s) 149
AluBI AGCT 3 cut(s) 109, 117, 213
AluI AGCT 3 cut(s) 109, 117, 213
AlwI GGATC 1 cut(s) 12
ApeKI GCWGC 1 cut(s) 169
AspS9I GGNCC 1 cut(s) 153
AvaII GGWCC 1 cut(s) 153
BbvI GCAGC 1 cut(s) 181
BciT130I CCWGG 1 cut(s) 151
BfaI CTAG 1 cut(s) 226
BisI GCNGC 2 cut(s) 167, 170
BlpI GCTNAGC 1 cut(s) 209
BlsI GCNGC 2 cut(s) 168, 171
Bme1390I CCNGG 1 cut(s) 151
Bme18I GGWCC 1 cut(s) 153
BmgT120I GGNCC 1 cut(s) 153
BmrFI CCNGG 1 cut(s) 151
Bpu1102I GCTNAGC 1 cut(s) 209
Bsc4I CCNNNNNNNGG 1 cut(s) 17
Bse3DI GCAATG 1 cut(s) 209
BseBI CCWGG 1 cut(s) 151
BseGI GGATG 1 cut(s) 184
BseLI CCNNNNNNNGG 1 cut(s) 17
BseMI GCAATG 1 cut(s) 209
BseMII CTCAG 1 cut(s) 200
BseXI GCAGC 1 cut(s) 181
BslI CCNNNNNNNGG 1 cut(s) 17
Bsp143I GATC 1 cut(s) 4
Bsp1720I GCTNAGC 1 cut(s) 209
BspACI CCGC 1 cut(s) 166
BspCNI CTCAG 1 cut(s) 201
BspHI TCATGA 1 cut(s) 25
BspPI GGATC 1 cut(s) 12
BsrDI GCAATG 1 cut(s) 209
BssMI GATC 1 cut(s) 4
Bst2UI CCWGG 1 cut(s) 151
BstDEI CTNAG 3 cut(s) 105, 209, 217
BstF5I GGATG 1 cut(s) 184
BstKTI GATC 1 cut(s) 7
BstMBI GATC 1 cut(s) 4
BstNI CCWGG 1 cut(s) 151
BstSCI CCNGG 1 cut(s) 149
BstV1I GCAGC 1 cut(s) 181
BtsCI GGATG 1 cut(s) 184
CciI TCATGA 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 153
CviAII CATG 2 cut(s) 17, 26
CviJI RGCY 4 cut(s) 109, 117, 208, 213
CviKI_1 RGCY 4 cut(s) 109, 117, 208, 213
DdeI CTNAG 3 cut(s) 105, 209, 217
DpnI GATC 1 cut(s) 6
DpnII GATC 1 cut(s) 4
DraI TTTAAA 1 cut(s) 90
Eco47I GGWCC 1 cut(s) 153
EcoRII CCWGG 1 cut(s) 149
FaeI CATG 2 cut(s) 20, 29
FaiI YATR 3 cut(s) 18, 27, 128
FatI CATG 2 cut(s) 16, 25
Fnu4HI GCNGC 2 cut(s) 167, 170
FokI GGATG 1 cut(s) 171
Fsp4HI GCNGC 2 cut(s) 167, 170
FspBI CTAG 1 cut(s) 226
GluI GCNGC 2 cut(s) 167, 170
Hin1II CATG 2 cut(s) 20, 29
HindIII AAGCTT 1 cut(s) 107
Hpy188III TCNNGA 1 cut(s) 26
HpyCH4IV ACGT 1 cut(s) 181
HpyCH4V TGCA 1 cut(s) 69
HpyF3I CTNAG 3 cut(s) 105, 209, 217
HpySE526I ACGT 1 cut(s) 181
Hsp92II CATG 2 cut(s) 20, 29
Kzo9I GATC 1 cut(s) 4
LpnPI CCDG 2 cut(s) 136, 163
Lsp1109I GCAGC 1 cut(s) 181
MaeI CTAG 1 cut(s) 226
MaeII ACGT 1 cut(s) 181
MalI GATC 1 cut(s) 6
MboI GATC 1 cut(s) 4
MluCI AATT 3 cut(s) 45, 85, 129
MseI TTAA 2 cut(s) 44, 89
MslI CAYNNNNRTG 1 cut(s) 195
MspR9I CCNGG 1 cut(s) 151
MvaI CCWGG 1 cut(s) 151
NdeII GATC 1 cut(s) 4
NlaIII CATG 2 cut(s) 20, 29
PagI TCATGA 1 cut(s) 25
PflMI CCANNNNNTGG 1 cut(s) 17
PfoI TCCNGGA 1 cut(s) 149
PkrI GCNGC 2 cut(s) 168, 171
PsiI TTATAA 1 cut(s) 128
Psp6I CCWGG 1 cut(s) 149
PspGI CCWGG 1 cut(s) 149
PspPI GGNCC 1 cut(s) 153
RseI CAYNNNNRTG 1 cut(s) 195
SaqAI TTAA 2 cut(s) 44, 89
SatI GCNGC 2 cut(s) 167, 170
Sau3AI GATC 1 cut(s) 4
Sau96I GGNCC 1 cut(s) 153
ScrFI CCNGG 1 cut(s) 151
SetI ASST 7 cut(s) 33, 111, 119, 158, 184, 215, 227
SgeI CNNG 6 cut(s) 29, 38, 67, 84, 162, 163
SinI GGWCC 1 cut(s) 153
SmiMI CAYNNNNRTG 1 cut(s) 195
Sse9I AATT 3 cut(s) 45, 85, 129
SsiI CCGC 1 cut(s) 166
SspMI CTAG 1 cut(s) 226
StyD4I CCNGG 1 cut(s) 149
TaiI ACGT 1 cut(s) 184
TasI AATT 3 cut(s) 45, 85, 129
TauI GCSGC 1 cut(s) 169
Tru1I TTAA 2 cut(s) 44, 89
Tru9I TTAA 2 cut(s) 44, 89
TseI GCWGC 1 cut(s) 169
Van91I CCANNNNNTGG 1 cut(s) 17
VpaK11BI GGWCC 1 cut(s) 153
XspI CTAG 1 cut(s) 226
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.