Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0019742

Physical Location & Seq

Genomic Coordinates Forward (+)

47393216 .. 47393383

Gene Structure 168 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG303300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 168 bp

ATGGAGGATGTAGGGAAACCAAACTTGGCAGACTTTTCTCCTGTGCTCAGGAAGCTTAACCCCCAAGGCATAAGGCGGCGCCTGGCCAATTATTTCCAGAAAACGGTGGTCTACTTCGACCACCTGATCAATCAAAGGTTGGACTCAAGAAGAAGAGGGCATGAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

55

Amino Acids

6.57

Weight (kDa)

10.48

Isoelectric Point (pI)

67.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019742)

Species	Orthologous Gene IDs
malus_domestica	MD06G1131100.v1.1 MD13G1115800.v1.1
rosa_chinensis	RchiOBHm_Chr4g0430051
rosa_laevigata	RLG00000007009
rosa_rugosa	Rorug04G0239800
rosa_samantha	Rh4BG303300 Rh4CG318800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	78
AccI	GTMKAC	1 cut(s)	111
AciI	CCGC	1 cut(s)	76
AcoI	YGGCCR	1 cut(s)	84
AcyI	GRCGYC	1 cut(s)	79
AfiI	CCNNNNNNNGG	1 cut(s)	103
AjnI	CCWGG	1 cut(s)	81
AjuI	GAANNNNNNNTTGG	2 cut(s)	8, 40
AluBI	AGCT	1 cut(s)	55
AluI	AGCT	1 cut(s)	55
Alw21I	GWGCWC	1 cut(s)	48
AoxI	GGCC	1 cut(s)	84
AspLEI	GCGC	1 cut(s)	81
BalI	TGGCCA	1 cut(s)	86
BanI	GGYRCC	1 cut(s)	78
Bbv12I	GWGCWC	1 cut(s)	48
BciT130I	CCWGG	1 cut(s)	83
BclI	TGATCA	1 cut(s)	126
BfoI	RGCGCY	1 cut(s)	82
BisI	GCNGC	1 cut(s)	77
BlsI	GCNGC	1 cut(s)	78
Bme1390I	CCNGG	1 cut(s)	83
BmiI	GGNNCC	1 cut(s)	80
BmrFI	CCNGG	1 cut(s)	83
Bpu10I	CCTNAGC	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	130
BsaHI	GRCGYC	1 cut(s)	79
BsaJI	CCNNGG	1 cut(s)	64
Bsc4I	CCNNNNNNNGG	1 cut(s)	103
BseBI	CCWGG	1 cut(s)	83
BseDI	CCNNGG	1 cut(s)	64
BseGI	GGATG	1 cut(s)	13
BseLI	CCNNNNNNNGG	1 cut(s)	103
BseMII	CTCAG	1 cut(s)	61
BshFI	GGCC	1 cut(s)	86
BshNI	GGYRCC	1 cut(s)	78
BsiHKAI	GWGCWC	1 cut(s)	48
BslI	CCNNNNNNNGG	1 cut(s)	103
BsnI	GGCC	1 cut(s)	86
Bsp1286I	GDGCHC	1 cut(s)	48
Bsp143I	GATC	1 cut(s)	126
BspACI	CCGC	1 cut(s)	76
BspANI	GGCC	1 cut(s)	86
BspCNI	CTCAG	1 cut(s)	60
BspLI	GGNNCC	1 cut(s)	80
BspT107I	GGYRCC	1 cut(s)	78
BssECI	CCNNGG	1 cut(s)	64
BssMI	GATC	1 cut(s)	126
BssNI	GRCGYC	1 cut(s)	79
BssT1I	CCWWGG	1 cut(s)	64
Bst2UI	CCWGG	1 cut(s)	83
Bst4CI	ACNGT	1 cut(s)	106
Bst6I	CTCTTC	1 cut(s)	148
BstACI	GRCGYC	1 cut(s)	79
BstDEI	CTNAG	1 cut(s)	47
BstF5I	GGATG	1 cut(s)	13
BstH2I	RGCGCY	1 cut(s)	82
BstHHI	GCGC	1 cut(s)	81
BstKTI	GATC	1 cut(s)	129
BstMBI	GATC	1 cut(s)	126
BstMWI	GCNNNNNNNGC	1 cut(s)	52
BstNI	CCWGG	1 cut(s)	83
BstSCI	CCNGG	1 cut(s)	81
BsuRI	GGCC	1 cut(s)	86
BtsCI	GGATG	1 cut(s)	13
CfoI	GCGC	1 cut(s)	81
CviAII	CATG	1 cut(s)	161
CviJI	RGCY	2 cut(s)	55, 86
CviKI_1	RGCY	2 cut(s)	55, 86
DdeI	CTNAG	1 cut(s)	47
DinI	GGCGCC	1 cut(s)	80
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
EaeI	YGGCCR	1 cut(s)	84
Eam1104I	CTCTTC	1 cut(s)	148
EarI	CTCTTC	1 cut(s)	148
Eco130I	CCWWGG	1 cut(s)	64
EcoRII	CCWGG	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	64
EgeI	GGCGCC	1 cut(s)	80
EheI	GGCGCC	1 cut(s)	80
ErhI	CCWWGG	1 cut(s)	64
FaeI	CATG	1 cut(s)	164
FaiI	YATR	2 cut(s)	71, 162
FatI	CATG	1 cut(s)	160
FbaI	TGATCA	1 cut(s)	126
FblI	GTMKAC	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	77
FokI	GGATG	1 cut(s)	20
Fsp4HI	GCNGC	1 cut(s)	77
GlaI	GCGC	1 cut(s)	80
GluI	GCNGC	1 cut(s)	77
HaeII	RGCGCY	1 cut(s)	82
HaeIII	GGCC	1 cut(s)	86
HhaI	GCGC	1 cut(s)	81
Hin1I	GRCGYC	1 cut(s)	79
Hin1II	CATG	1 cut(s)	164
Hin6I	GCGC	1 cut(s)	79
HinP1I	GCGC	1 cut(s)	79
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	112
Hpy188III	TCNNGA	3 cut(s)	49, 97, 147
Hpy8I	GTNNAC	1 cut(s)	112
HpyCH4III	ACNGT	1 cut(s)	106
HpyF10VI	GCNNNNNNNGC	1 cut(s)	52
HpyF3I	CTNAG	1 cut(s)	47
Hsp92I	GRCGYC	1 cut(s)	79
Hsp92II	CATG	1 cut(s)	164
HspAI	GCGC	1 cut(s)	79
KasI	GGCGCC	1 cut(s)	78
Ksp22I	TGATCA	1 cut(s)	126
Kzo9I	GATC	1 cut(s)	126
LpnPI	CCDG	6 cut(s)	34, 54, 68, 95, 110, 137
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MboII	GAAGA	2 cut(s)	162, 165
MhlI	GDGCHC	1 cut(s)	48
MlsI	TGGCCA	1 cut(s)	86
MluCI	AATT	1 cut(s)	88
MluNI	TGGCCA	1 cut(s)	86
Mly113I	GGCGCC	1 cut(s)	79
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	1 cut(s)	120
MnlI	CCTC	1 cut(s)	149
Mox20I	TGGCCA	1 cut(s)	86
MscI	TGGCCA	1 cut(s)	86
MseI	TTAA	1 cut(s)	57
Msp20I	TGGCCA	1 cut(s)	86
MspR9I	CCNGG	1 cut(s)	83
MvaI	CCWGG	1 cut(s)	83
MwoI	GCNNNNNNNGC	1 cut(s)	52
NarI	GGCGCC	1 cut(s)	79
NdeII	GATC	1 cut(s)	126
NlaIII	CATG	1 cut(s)	164
NlaIV	GGNNCC	1 cut(s)	80
PkrI	GCNGC	1 cut(s)	78
PleI	GAGTC	1 cut(s)	137
PluTI	GGCGCC	1 cut(s)	82
PpsI	GAGTC	1 cut(s)	137
Psp6I	CCWGG	1 cut(s)	81
PspGI	CCWGG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	57
SatI	GCNGC	1 cut(s)	77
Sau3AI	GATC	1 cut(s)	126
SchI	GAGTC	1 cut(s)	137
ScrFI	CCNGG	1 cut(s)	83
SduI	GDGCHC	1 cut(s)	48
SetI	ASST	3 cut(s)	57, 126, 140
SfoI	GGCGCC	1 cut(s)	80
SgeI	CNNG	9 cut(s)	37, 53, 61, 77, 94, 95, 109, 136, 159
SmlI	CTYRAG	1 cut(s)	145
SmoI	CTYRAG	1 cut(s)	145
Sse9I	AATT	1 cut(s)	88
SsiI	CCGC	1 cut(s)	76
SspDI	GGCGCC	1 cut(s)	78
StyD4I	CCNGG	1 cut(s)	81
StyI	CCWWGG	1 cut(s)	64
TaaI	ACNGT	1 cut(s)	106
TaqI	TCGA	1 cut(s)	117
TasI	AATT	1 cut(s)	88
TauI	GCSGC	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	57
Tru9I	TTAA	1 cut(s)	57
XmiI	GTMKAC	1 cut(s)	111

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.