RLG00000007009

Belongs to the cytochrome P450 family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0019742
Physical Location & Seq
Reverse (-)
12653266 .. 12653832
567 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000007009

Sequence Viewer

Length: 363 bp
ATGGAGTGGGCAATGGCTGAGCTACTACACAACCTAGAAGGTGCACAAGTTCTTGTCAATGTTTGGGCCATAGGAAGAGACCCTGGCACTTGGGATAGCCCTGGTTATTTTAAGCCGGAGAGGTTCTTGGGGTTGGAGAATGAAATTGATGTTATGGGAAGAAACTTTGAGCTTATTCCATTTGGTGGTGGGAGGAGAATATGTCCGGGGTTGCCTTTGGCATTGAGAATGTTGCACTTGATATTAGGGTTGCTCACTGACTGCTTTGAATGGAAGCTCGAAGCTCGAAGATGGTCTTGTACCAAAGACTACGAACATGGAGGAGAAGTTTGGCATCAACTTAAGGATGGCTCAGCCACTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
p450

Protein Analysis

121

Amino Acids

13.7

Weight (kDa)

5.3

Isoelectric Point (pI)

38.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 14 - 99 7.3e-21 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0019742)

Species Orthologous Gene IDs
malus_domestica MD06G1131100.v1.1 MD13G1115800.v1.1
rosa_chinensis RchiOBHm_Chr4g0430051
rosa_laevigata RLG00000007009
rosa_rugosa Rorug04G0239800
rosa_samantha Rh4BG303300 Rh4CG318800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 185
AfaI GTAC 1 cut(s) 301
AfiI CCNNNNNNNGG 1 cut(s) 185
AflII CTTAAG 1 cut(s) 341
AgsI TTSAA 1 cut(s) 269
AjnI CCWGG 2 cut(s) 82, 100
AluBI AGCT 4 cut(s) 22, 172, 277, 284
AluI AGCT 4 cut(s) 22, 172, 277, 284
Alw21I GWGCWC 1 cut(s) 46
Alw26I GTCTC 1 cut(s) 72
Alw44I GTGCAC 1 cut(s) 42
AoxI GGCC 1 cut(s) 66
ApaLI GTGCAC 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 66
AsuC2I CCSGG 1 cut(s) 207
BaeGI GKGCMC 1 cut(s) 46
Bbv12I GWGCWC 1 cut(s) 46
BccI CCATC 2 cut(s) 285, 341
BciT130I CCWGG 2 cut(s) 84, 102
BcnI CCSGG 1 cut(s) 207
BcoDI GTCTC 1 cut(s) 72
BfaI CTAG 1 cut(s) 35
BfrI CTTAAG 1 cut(s) 341
BlpI GCTNAGC 2 cut(s) 18, 352
Bme1390I CCNGG 3 cut(s) 84, 102, 207
BmgT120I GGNCC 1 cut(s) 66
BmrFI CCNGG 3 cut(s) 84, 102, 207
BmsI GCATC 1 cut(s) 343
Bpu1102I GCTNAGC 2 cut(s) 18, 352
BpuMI CCSGG 1 cut(s) 207
BsaI GGTCTC 1 cut(s) 72
BsaJI CCNNGG 3 cut(s) 82, 100, 206
BsaXI ACNNNNNCTCC 4 cut(s) 187, 217, 312, 342
Bsc4I CCNNNNNNNGG 1 cut(s) 185
Bse3DI GCAATG 1 cut(s) 18
BseBI CCWGG 2 cut(s) 84, 102
BseDI CCNNGG 3 cut(s) 82, 100, 206
BseGI GGATG 1 cut(s) 352
BseLI CCNNNNNNNGG 1 cut(s) 185
BseMI GCAATG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 9
BseRI GAGGAG 2 cut(s) 208, 336
BseSI GKGCMC 1 cut(s) 46
BshFI GGCC 1 cut(s) 68
BsiHKAI GWGCWC 1 cut(s) 46
BsiSI CCGG 2 cut(s) 116, 206
BslI CCNNNNNNNGG 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 72
BsnI GGCC 1 cut(s) 68
Bso31I GGTCTC 1 cut(s) 72
Bsp1286I GDGCHC 1 cut(s) 46
Bsp1720I GCTNAGC 2 cut(s) 18, 352
BspANI GGCC 1 cut(s) 68
BspCNI CTCAG 1 cut(s) 10
BspTI CTTAAG 1 cut(s) 341
BspTNI GGTCTC 1 cut(s) 72
BsrDI GCAATG 1 cut(s) 18
BssECI CCNNGG 3 cut(s) 82, 100, 206
Bst2UI CCWGG 2 cut(s) 84, 102
Bst6I CTCTTC 1 cut(s) 70
BstAFI CTTAAG 1 cut(s) 341
BstDEI CTNAG 3 cut(s) 18, 352, 360
BstF5I GGATG 1 cut(s) 352
BstMAI GTCTC 1 cut(s) 72
BstNI CCWGG 2 cut(s) 84, 102
BstSCI CCNGG 3 cut(s) 82, 100, 205
BstSLI GKGCMC 1 cut(s) 46
BsuRI GGCC 1 cut(s) 68
BtsCI GGATG 1 cut(s) 352
BtsIMutI CAGTG 1 cut(s) 255
Cfr13I GGNCC 1 cut(s) 66
Csp6I GTAC 1 cut(s) 300
CviAII CATG 1 cut(s) 317
CviQI GTAC 1 cut(s) 300
DdeI CTNAG 3 cut(s) 18, 352, 360
Eam1104I CTCTTC 1 cut(s) 70
EarI CTCTTC 1 cut(s) 70
Eco31I GGTCTC 1 cut(s) 72
EcoRII CCWGG 2 cut(s) 82, 100
FaeI CATG 1 cut(s) 320
FaiI YATR 4 cut(s) 71, 155, 202, 318
FalI AAGNNNNNCTT 2 cut(s) 280, 312
FatI CATG 1 cut(s) 316
FokI GGATG 1 cut(s) 359
FspBI CTAG 1 cut(s) 35
HaeIII GGCC 1 cut(s) 68
HapII CCGG 2 cut(s) 116, 206
Hin1II CATG 1 cut(s) 320
HpaII CCGG 2 cut(s) 116, 206
Hpy166II GTNNAC 1 cut(s) 44
Hpy8I GTNNAC 1 cut(s) 44
HpyAV CCTTC 1 cut(s) 32
HpyCH4V TGCA 2 cut(s) 44, 235
HpyF3I CTNAG 3 cut(s) 18, 352, 360
Hsp92II CATG 1 cut(s) 320
LpnPI CCDG 6 cut(s) 69, 87, 96, 114, 129, 219
LweI GCATC 1 cut(s) 343
MaeI CTAG 1 cut(s) 35
MboII GAAGA 3 cut(s) 87, 171, 300
MhlI GDGCHC 1 cut(s) 46
MluCI AATT 1 cut(s) 144
MmeI TCCRAC 1 cut(s) 114
MnlI CCTC 3 cut(s) 114, 186, 314
MseI TTAA 2 cut(s) 111, 342
MspCI CTTAAG 1 cut(s) 341
MspI CCGG 2 cut(s) 116, 206
MspR9I CCNGG 3 cut(s) 84, 102, 207
MvaI CCWGG 2 cut(s) 84, 102
NciI CCSGG 1 cut(s) 207
NlaIII CATG 1 cut(s) 320
PflMI CCANNNNNTGG 1 cut(s) 185
Psp6I CCWGG 2 cut(s) 82, 100
PspGI CCWGG 2 cut(s) 82, 100
PspPI GGNCC 1 cut(s) 66
RsaI GTAC 1 cut(s) 301
RsaNI GTAC 1 cut(s) 300
SaqAI TTAA 2 cut(s) 111, 342
Sau96I GGNCC 1 cut(s) 66
ScrFI CCNGG 3 cut(s) 84, 102, 207
SduI GDGCHC 1 cut(s) 46
SetI ASST 7 cut(s) 24, 36, 43, 125, 174, 279, 286
SfaNI GCATC 1 cut(s) 343
SmlI CTYRAG 1 cut(s) 341
SmoI CTYRAG 1 cut(s) 341
Sse9I AATT 1 cut(s) 144
SspMI CTAG 1 cut(s) 35
StyD4I CCNGG 3 cut(s) 82, 100, 205
TaqI TCGA 2 cut(s) 279, 286
TasI AATT 1 cut(s) 144
Tru1I TTAA 2 cut(s) 111, 342
Tru9I TTAA 2 cut(s) 111, 342
TscAI CASTG 1 cut(s) 262
TspDTI ATGAA 1 cut(s) 156
TspRI CASTG 1 cut(s) 262
Van91I CCANNNNNTGG 1 cut(s) 185
Vha464I CTTAAG 1 cut(s) 341
VneI GTGCAC 1 cut(s) 42
XspI CTAG 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.