Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0019742

Physical Location & Seq

Genomic Coordinates Reverse (-)

8399730 .. 8402847

Gene Structure 3118 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1115800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

ATGGCCCCCATAATGACCTTGCAACTCGGCCAAATAACGACAGTGGTAATTTCTTCATCATTCGTCGCCAAAGAAGTCCTCCGAACCCATGACCAACTTTTTTTTGCAACCAAACCATCCCAGATGCGGTCCAAGCCTGTAAACATTCCAAGTACAGCATGGCTTGGACACCGGTTTCAGCTACATGGAGAAATCTTCGCAAAACATTTCAAGGAGTTGGTGTGGAGTATCTTTGAAGAGGCTGGGAAACCTAACTTGGCTGACTATTTTCCTGTGCTGAAAAAGATTGATCCCCAGGGGATACGACGCCGTATGACTGATCACTTCCAGAAGATGTTTGACCTCTTCAACTGCTTGATGATGCAACGGACCTATTTGTTGCGGCAGCAGATACAACGTCATCCACATTGGAATGGGCAATGGCTGAGCTACTCAGCAACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004497 GO:0005575 GO:0008150 GO:0008152 GO:0009058 GO:0016020 GO:0016491 GO:0016705 GO:0016709 GO:0019748 GO:0044550 GO:0055114

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

p450

Protein Analysis

148

Amino Acids

17.3

Weight (kDa)

10.0

Isoelectric Point (pI)

45.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019742)

Species	Orthologous Gene IDs
malus_domestica	MD06G1131100.v1.1 MD13G1115800.v1.1
rosa_chinensis	RchiOBHm_Chr4g0430051
rosa_laevigata	RLG00000007009
rosa_rugosa	Rorug04G0239800
rosa_samantha	Rh4BG303300 Rh4CG318800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	127, 382
AclWI	GGATC	1 cut(s)	284
AcoI	YGGCCR	1 cut(s)	28
AcyI	GRCGYC	1 cut(s)	307
AfaI	GTAC	1 cut(s)	154
AfiI	CCNNNNNNNGG	1 cut(s)	126
AgeI	ACCGGT	1 cut(s)	171
AgsI	TTSAA	3 cut(s)	211, 236, 349
AjnI	CCWGG	1 cut(s)	294
AjuI	GAANNNNNNNTTGG	2 cut(s)	239, 271
AluBI	AGCT	2 cut(s)	181, 429
AluI	AGCT	2 cut(s)	181, 429
AlwI	GGATC	1 cut(s)	284
AoxI	GGCC	2 cut(s)	3, 28
ApeKI	GCWGC	1 cut(s)	385
AsiGI	ACCGGT	1 cut(s)	171
AspS9I	GGNCC	3 cut(s)	4, 129, 369
AvaII	GGWCC	2 cut(s)	129, 369
BbvI	GCAGC	1 cut(s)	397
BccI	CCATC	1 cut(s)	124
BceAI	ACGGC	1 cut(s)	294
BciT130I	CCWGG	1 cut(s)	296
BciVI	GTATCC	1 cut(s)	294
BclI	TGATCA	1 cut(s)	319
BfaI	CTAG	1 cut(s)	442
BfuI	GTATCC	1 cut(s)	294
BisI	GCNGC	2 cut(s)	383, 386
BlpI	GCTNAGC	1 cut(s)	425
BlsI	GCNGC	2 cut(s)	384, 387
Bme1390I	CCNGG	1 cut(s)	296
Bme18I	GGWCC	2 cut(s)	129, 369
BmgT120I	GGNCC	3 cut(s)	4, 129, 369
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	1 cut(s)	296
BmsI	GCATC	2 cut(s)	114, 351
Bpu1102I	GCTNAGC	1 cut(s)	425
BsaHI	GRCGYC	1 cut(s)	307
BsaJI	CCNNGG	2 cut(s)	294, 295
BsaWI	WCCGGW	1 cut(s)	171
BsaXI	ACNNNNNCTCC	2 cut(s)	206, 236
Bsc4I	CCNNNNNNNGG	1 cut(s)	126
Bse118I	RCCGGY	1 cut(s)	171
Bse3DI	GCAATG	1 cut(s)	425
BseBI	CCWGG	1 cut(s)	296
BseDI	CCNNGG	2 cut(s)	294, 295
BseGI	GGATG	2 cut(s)	116, 400
BseLI	CCNNNNNNNGG	1 cut(s)	126
BseMI	GCAATG	1 cut(s)	425
BseMII	CTCAG	1 cut(s)	416
BseXI	GCAGC	1 cut(s)	397
BseYI	CCCAGC	1 cut(s)	242
BshFI	GGCC	2 cut(s)	5, 30
BshTI	ACCGGT	1 cut(s)	171
BsiSI	CCGG	1 cut(s)	172
BslI	CCNNNNNNNGG	1 cut(s)	126
BsnI	GGCC	2 cut(s)	5, 30
Bsp143I	GATC	2 cut(s)	289, 319
Bsp1720I	GCTNAGC	1 cut(s)	425
BspACI	CCGC	2 cut(s)	127, 382
BspANI	GGCC	2 cut(s)	5, 30
BspCNI	CTCAG	1 cut(s)	417
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	284
BsrDI	GCAATG	1 cut(s)	425
BsrFI	RCCGGY	1 cut(s)	171
BssAI	RCCGGY	1 cut(s)	171
BssECI	CCNNGG	2 cut(s)	294, 295
BssMI	GATC	2 cut(s)	289, 319
BssNI	GRCGYC	1 cut(s)	307
Bst2UI	CCWGG	1 cut(s)	296
Bst4CI	ACNGT	1 cut(s)	43
Bst6I	CTCTTC	2 cut(s)	231, 350
BstACI	GRCGYC	1 cut(s)	307
BstDEI	CTNAG	2 cut(s)	425, 433
BstF5I	GGATG	2 cut(s)	116, 400
BstKTI	GATC	2 cut(s)	292, 322
BstMBI	GATC	2 cut(s)	289, 319
BstMWI	GCNNNNNNNGC	1 cut(s)	133
BstNI	CCWGG	1 cut(s)	296
BstSCI	CCNGG	1 cut(s)	294
BstV1I	GCAGC	1 cut(s)	397
BsuI	GTATCC	1 cut(s)	294
BsuRI	GGCC	2 cut(s)	5, 30
BtsCI	GGATG	2 cut(s)	116, 400
BtsIMutI	CAGTG	1 cut(s)	48
Cfr10I	RCCGGY	1 cut(s)	171
Cfr13I	GGNCC	3 cut(s)	4, 129, 369
CseI	GACGC	1 cut(s)	315
Csp6I	GTAC	1 cut(s)	153
CspAI	ACCGGT	1 cut(s)	171
CviAII	CATG	3 cut(s)	89, 159, 185
CviJI	RGCY	9 cut(s)	5, 30, 136, 163, 181, 242, 260, 424, 429
CviKI_1	RGCY	9 cut(s)	5, 30, 136, 163, 181, 242, 260, 424, 429
CviQI	GTAC	1 cut(s)	153
DdeI	CTNAG	2 cut(s)	425, 433
DpnI	GATC	2 cut(s)	291, 321
DpnII	GATC	2 cut(s)	289, 319
EaeI	YGGCCR	1 cut(s)	28
Eam1104I	CTCTTC	2 cut(s)	231, 350
EarI	CTCTTC	2 cut(s)	231, 350
Eco47I	GGWCC	2 cut(s)	129, 369
EcoRII	CCWGG	1 cut(s)	294
FaeI	CATG	3 cut(s)	92, 162, 188
FaiI	YATR	5 cut(s)	11, 90, 160, 186, 314
FatI	CATG	3 cut(s)	88, 158, 184
FbaI	TGATCA	1 cut(s)	319
Fnu4HI	GCNGC	2 cut(s)	383, 386
FokI	GGATG	2 cut(s)	103, 387
Fsp4HI	GCNGC	2 cut(s)	383, 386
FspBI	CTAG	1 cut(s)	442
GluI	GCNGC	2 cut(s)	383, 386
GsaI	CCCAGC	1 cut(s)	246
HaeIII	GGCC	2 cut(s)	5, 30
HapII	CCGG	1 cut(s)	172
HgaI	GACGC	1 cut(s)	315
Hin1I	GRCGYC	1 cut(s)	307
Hin1II	CATG	3 cut(s)	92, 162, 188
HpaII	CCGG	1 cut(s)	172
Hpy166II	GTNNAC	1 cut(s)	142
Hpy188I	TCNGA	1 cut(s)	83
Hpy188III	TCNNGA	1 cut(s)	328
Hpy8I	GTNNAC	1 cut(s)	142
Hpy99I	CGWCG	2 cut(s)	68, 309
HpyCH4III	ACNGT	1 cut(s)	43
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	3 cut(s)	22, 107, 364
HpyF10VI	GCNNNNNNNGC	1 cut(s)	133
HpyF3I	CTNAG	2 cut(s)	425, 433
HpySE526I	ACGT	1 cut(s)	397
Hsp92I	GRCGYC	1 cut(s)	307
Hsp92II	CATG	3 cut(s)	92, 162, 188
Ksp22I	TGATCA	1 cut(s)	319
Kzo9I	GATC	2 cut(s)	289, 319
LpnPI	CCDG	8 cut(s)	134, 150, 185, 228, 281, 285, 308, 341
Lsp1109I	GCAGC	1 cut(s)	397
LweI	GCATC	2 cut(s)	114, 351
MaeI	CTAG	1 cut(s)	442
MaeII	ACGT	1 cut(s)	397
MalI	GATC	2 cut(s)	291, 321
MboI	GATC	2 cut(s)	289, 319
MboII	GAAGA	5 cut(s)	45, 187, 248, 337, 343
MluCI	AATT	1 cut(s)	48
MnlI	CCTC	3 cut(s)	89, 232, 353
MslI	CAYNNNNRTG	1 cut(s)	411
MspI	CCGG	1 cut(s)	172
MspR9I	CCNGG	1 cut(s)	296
MvaI	CCWGG	1 cut(s)	296
MwoI	GCNNNNNNNGC	1 cut(s)	133
NdeII	GATC	2 cut(s)	289, 319
NlaIII	CATG	3 cut(s)	92, 162, 188
NlaIV	GGNNCC	1 cut(s)	6
NmeAIII	GCCGAG	1 cut(s)	6
PasI	CCCWGGG	1 cut(s)	295
PinAI	ACCGGT	1 cut(s)	171
PkrI	GCNGC	2 cut(s)	384, 387
Psp6I	CCWGG	1 cut(s)	294
PspFI	CCCAGC	1 cut(s)	242
PspGI	CCWGG	1 cut(s)	294
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	3 cut(s)	4, 129, 369
RsaI	GTAC	1 cut(s)	154
RsaNI	GTAC	1 cut(s)	153
RseI	CAYNNNNRTG	1 cut(s)	411
SatI	GCNGC	2 cut(s)	383, 386
Sau3AI	GATC	2 cut(s)	289, 319
Sau96I	GGNCC	3 cut(s)	4, 129, 369
ScrFI	CCNGG	1 cut(s)	296
SetI	ASST	8 cut(s)	20, 183, 253, 345, 374, 400, 431, 443
SfaNI	GCATC	2 cut(s)	114, 351
SinI	GGWCC	2 cut(s)	129, 369
SmiMI	CAYNNNNRTG	1 cut(s)	411
Sse9I	AATT	1 cut(s)	48
SsiI	CCGC	2 cut(s)	127, 382
SspMI	CTAG	1 cut(s)	442
StyD4I	CCNGG	1 cut(s)	294
TaaI	ACNGT	1 cut(s)	43
TaiI	ACGT	1 cut(s)	400
TasI	AATT	1 cut(s)	48
TatI	WGTACW	1 cut(s)	152
TauI	GCSGC	1 cut(s)	385
TscAI	CASTG	1 cut(s)	48
TseI	GCWGC	1 cut(s)	385
TspDTI	ATGAA	1 cut(s)	45
TspGWI	ACGGA	1 cut(s)	382
TspRI	CASTG	1 cut(s)	48
VpaK11BI	GGWCC	2 cut(s)	129, 369
XcmI	CCANNNNNNNNNTGG	1 cut(s)	156
XspI	CTAG	1 cut(s)	442

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.