Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0016843

Physical Location & Seq

Genomic Coordinates Reverse (-)

31230587 .. 31230970

Gene Structure 384 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1171800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ATGAAGTTGGAGAGACTAAATCTCTCTTCCAATAATCTCCAAGGAGAAGTTCCTGCCCCACTTGGAAAGTCGACAAGCCTGCACATGATAAACCTATCAAAGGACCATCTCCAAGGTCAAATCCCATCAACCATTTCAGGATTCCCACTCAGCTCCTTCTCGAGGAACACCAATCTCCGGCCACCATTAGCGTCATGTGTTCAGAATCTCGAAGGCCTAGGCTGGAATTCCAGTGCCCGTTGTTTTAACATCTGCAGTAAAATGTTGCTTTATGTCATGCTGAGGATGTGGTGCAACTGGAGAAGAGTTTCCGTTTCGAACTTGGACGGCGTGGGAGCAGCGGAGGCAGGCGGGACGGATTGCAAGAGGGAAGAGGAGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

128

Amino Acids

14.01

Weight (kDa)

8.97

Isoelectric Point (pI)

52.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05610
malus_domestica	MD06G1171800.v1.1
prunus_persica	Prupe.5G170700_v2.0.a1 Prupe.5G170700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0193201
rosa_laevigata	RLG00000004287
rosa_multiflora	Rmu_ssc0000092.1_g000027
rosa_roxburghii	Rroxscaffold_3G00262290
rosa_rugosa	Rorug07G0008300
rosa_samantha	Rh7AG133700 Rh7BG134700 Rh7CG137600 Rh7DG135700
rosa_wichuraiana	Rw7G011430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	71
AciI	CCGC	2 cut(s)	341, 351
AcoI	YGGCCR	1 cut(s)	179
AcsI	RAATTY	1 cut(s)	226
AfiI	CCNNNNNNNGG	3 cut(s)	100, 162, 177
AjuI	GAANNNNNNNTTGG	2 cut(s)	33, 65
AluBI	AGCT	1 cut(s)	153
AluI	AGCT	1 cut(s)	153
Alw26I	GTCTC	1 cut(s)	7
Ama87I	CYCGRG	1 cut(s)	160
AoxI	GGCC	2 cut(s)	179, 214
ApeKI	GCWGC	1 cut(s)	338
ApoI	RAATTY	1 cut(s)	226
Asp700I	GAANNNNTTC	1 cut(s)	307
AspA2I	CCTAGG	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	103
AsuII	TTCGAA	1 cut(s)	317
AvaI	CYCGRG	1 cut(s)	160
AvaII	GGWCC	1 cut(s)	103
AvrII	CCTAGG	1 cut(s)	217
BaeGI	GKGCMC	1 cut(s)	238
BbvCI	CCTCAGC	1 cut(s)	281
BbvI	GCAGC	1 cut(s)	350
BccI	CCATC	2 cut(s)	114, 133
BceAI	ACGGC	1 cut(s)	343
BcgI	CGANNNNNNTGC	2 cut(s)	61, 95
BcoDI	GTCTC	1 cut(s)	7
BfaI	CTAG	1 cut(s)	218
BfmI	CTRYAG	1 cut(s)	253
BisI	GCNGC	1 cut(s)	339
BlnI	CCTAGG	1 cut(s)	217
BlsI	GCNGC	1 cut(s)	340
Bme18I	GGWCC	1 cut(s)	103
BmeT110I	CYCGRG	1 cut(s)	160
BmgT120I	GGNCC	1 cut(s)	103
BpmI	CTGGAG	1 cut(s)	319
Bpu10I	CCTNAGC	1 cut(s)	281
Bpu14I	TTCGAA	1 cut(s)	317
BsaJI	CCNNGG	3 cut(s)	40, 112, 217
Bsc4I	CCNNNNNNNGG	3 cut(s)	100, 162, 177
Bse1I	ACTGG	2 cut(s)	231, 302
BseDI	CCNNGG	3 cut(s)	40, 112, 217
BseGI	GGATG	1 cut(s)	291
BseLI	CCNNNNNNNGG	3 cut(s)	100, 162, 177
BseMII	CTCAG	2 cut(s)	163, 272
BseNI	ACTGG	2 cut(s)	231, 302
BseSI	GKGCMC	1 cut(s)	238
BseXI	GCAGC	1 cut(s)	350
BsgI	GTGCAG	1 cut(s)	65
BshFI	GGCC	2 cut(s)	181, 216
BsiHKCI	CYCGRG	1 cut(s)	160
BsiSI	CCGG	1 cut(s)	178
BslFI	GGGAC	1 cut(s)	367
BslI	CCNNNNNNNGG	3 cut(s)	100, 162, 177
BsmAI	GTCTC	1 cut(s)	7
BsmFI	GGGAC	1 cut(s)	367
BsnI	GGCC	2 cut(s)	181, 216
BsoBI	CYCGRG	1 cut(s)	160
Bsp119I	TTCGAA	1 cut(s)	317
Bsp1286I	GDGCHC	1 cut(s)	238
BspACI	CCGC	2 cut(s)	341, 351
BspANI	GGCC	2 cut(s)	181, 216
BspCNI	CTCAG	2 cut(s)	162, 273
BspMAI	CTGCAG	1 cut(s)	257
BspT104I	TTCGAA	1 cut(s)	317
BsrI	ACTGG	2 cut(s)	231, 302
BssECI	CCNNGG	3 cut(s)	40, 112, 217
BssT1I	CCWWGG	3 cut(s)	40, 112, 217
Bst6I	CTCTTC	3 cut(s)	31, 298, 366
BstBI	TTCGAA	1 cut(s)	317
BstC8I	GCNNGC	2 cut(s)	80, 349
BstDEI	CTNAG	2 cut(s)	149, 281
BstENI	CCTNNNNNAGG	2 cut(s)	98, 160
BstF5I	GGATG	1 cut(s)	291
BstMAI	GTCTC	1 cut(s)	7
BstMWI	GCNNNNNNNGC	1 cut(s)	344
BstSFI	CTRYAG	1 cut(s)	253
BstSLI	GKGCMC	1 cut(s)	238
BstV1I	GCAGC	1 cut(s)	350
BsuRI	GGCC	2 cut(s)	181, 216
BtsCI	GGATG	1 cut(s)	291
BtsIMutI	CAGTG	1 cut(s)	238
Cac8I	GCNNGC	2 cut(s)	80, 349
Cfr13I	GGNCC	1 cut(s)	103
CseI	GACGC	1 cut(s)	180
CviAII	CATG	3 cut(s)	85, 195, 277
CviJI	RGCY	5 cut(s)	78, 153, 181, 216, 222
CviKI_1	RGCY	5 cut(s)	78, 153, 181, 216, 222
DdeI	CTNAG	2 cut(s)	149, 281
EaeI	YGGCCR	1 cut(s)	179
Eam1104I	CTCTTC	3 cut(s)	31, 298, 366
EarI	CTCTTC	3 cut(s)	31, 298, 366
Eco130I	CCWWGG	3 cut(s)	40, 112, 217
Eco147I	AGGCCT	1 cut(s)	216
Eco47I	GGWCC	1 cut(s)	103
Eco88I	CYCGRG	1 cut(s)	160
EcoNI	CCTNNNNNAGG	2 cut(s)	98, 160
EcoRI	GAATTC	1 cut(s)	226
EcoT14I	CCWWGG	3 cut(s)	40, 112, 217
ErhI	CCWWGG	3 cut(s)	40, 112, 217
FaeI	CATG	3 cut(s)	88, 198, 280
FaiI	YATR	4 cut(s)	86, 196, 273, 278
FaqI	GGGAC	1 cut(s)	367
FatI	CATG	3 cut(s)	84, 194, 276
FauI	CCCGC	1 cut(s)	344
FblI	GTMKAC	1 cut(s)	71
Fnu4HI	GCNGC	1 cut(s)	339
FokI	GGATG	1 cut(s)	298
Fsp4HI	GCNGC	1 cut(s)	339
FspBI	CTAG	1 cut(s)	218
GluI	GCNGC	1 cut(s)	339
GsuI	CTGGAG	1 cut(s)	319
HaeIII	GGCC	2 cut(s)	181, 216
HapII	CCGG	1 cut(s)	178
HgaI	GACGC	1 cut(s)	180
Hin1II	CATG	3 cut(s)	88, 198, 280
HincII	GTYRAC	1 cut(s)	72
HindII	GTYRAC	1 cut(s)	72
HinfI	GANTC	2 cut(s)	141, 205
HpaII	CCGG	1 cut(s)	178
Hpy166II	GTNNAC	1 cut(s)	72
Hpy188I	TCNGA	1 cut(s)	204
Hpy188III	TCNNGA	3 cut(s)	138, 160, 209
Hpy8I	GTNNAC	1 cut(s)	72
HpyAV	CCTTC	2 cut(s)	166, 206
HpyCH4V	TGCA	4 cut(s)	82, 255, 294, 363
HpyF10VI	GCNNNNNNNGC	1 cut(s)	344
HpyF3I	CTNAG	2 cut(s)	149, 281
Hsp92II	CATG	3 cut(s)	88, 198, 280
LmnI	GCTCC	2 cut(s)	158, 335
LpnPI	CCDG	8 cut(s)	66, 92, 123, 191, 208, 244, 283, 333
Lsp1109I	GCAGC	1 cut(s)	350
MaeI	CTAG	1 cut(s)	218
MboII	GAAGA	3 cut(s)	18, 315, 383
MhlI	GDGCHC	1 cut(s)	238
MluCI	AATT	1 cut(s)	226
MnlI	CCTC	5 cut(s)	156, 276, 337, 360, 367
MroXI	GAANNNNTTC	1 cut(s)	307
MseI	TTAA	1 cut(s)	246
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	1 cut(s)	178
MwoI	GCNNNNNNNGC	1 cut(s)	344
NlaIII	CATG	3 cut(s)	88, 198, 280
NspV	TTCGAA	1 cut(s)	317
PaeR7I	CTCGAG	1 cut(s)	160
PceI	AGGCCT	1 cut(s)	216
PdmI	GAANNNNTTC	1 cut(s)	307
PfeI	GAWTC	2 cut(s)	141, 205
PkrI	GCNGC	1 cut(s)	340
PspPI	GGNCC	1 cut(s)	103
PstI	CTGCAG	1 cut(s)	257
SalI	GTCGAC	1 cut(s)	70
SaqAI	TTAA	1 cut(s)	246
SatI	GCNGC	1 cut(s)	339
Sau96I	GGNCC	1 cut(s)	103
SduI	GDGCHC	1 cut(s)	238
SetI	ASST	3 cut(s)	96, 118, 155
SfcI	CTRYAG	1 cut(s)	253
Sfr274I	CTCGAG	1 cut(s)	160
SfuI	TTCGAA	1 cut(s)	317
SinI	GGWCC	1 cut(s)	103
SlaI	CTCGAG	1 cut(s)	160
SmlI	CTYRAG	1 cut(s)	160
SmoI	CTYRAG	1 cut(s)	160
Sse9I	AATT	1 cut(s)	226
SseBI	AGGCCT	1 cut(s)	216
SsiI	CCGC	2 cut(s)	341, 351
SspMI	CTAG	1 cut(s)	218
StuI	AGGCCT	1 cut(s)	216
StyI	CCWWGG	3 cut(s)	40, 112, 217
TaqI	TCGA	4 cut(s)	71, 161, 210, 317
TasI	AATT	1 cut(s)	226
TfiI	GAWTC	2 cut(s)	141, 205
Tru1I	TTAA	1 cut(s)	246
Tru9I	TTAA	1 cut(s)	246
TscAI	CASTG	1 cut(s)	238
TseI	GCWGC	1 cut(s)	338
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	301, 371
TspRI	CASTG	1 cut(s)	238
VpaK11BI	GGWCC	1 cut(s)	103
XagI	CCTNNNNNAGG	2 cut(s)	98, 160
XapI	RAATTY	1 cut(s)	226
XhoI	CTCGAG	1 cut(s)	160
XmaJI	CCTAGG	1 cut(s)	217
XmiI	GTMKAC	1 cut(s)	71
XmnI	GAANNNNTTC	1 cut(s)	307
XspI	CTAG	1 cut(s)	218

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.