Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0016843

Physical Location & Seq

Genomic Coordinates Forward (+)

11601277 .. 11604183

Gene Structure 2907 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ17275

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2907 bp

ATGCATTTTGTGATGGGTGGCATTGAAATGTCTCATTTCATGCTGTTTCTTGCAATACTTCATTCCATTCTTGCTGTTGCTCCTGGAGATAATTCGAGAGACTCCAGCCGTCTTCTGAGAATCAAATCAGAACTCGTAGATCCATCAGGAGTTCTGAGCAACTGGTCTCCAAGAGCTCATATATGCAGTTGGAATGGCCTTGAATGTTCAAATGATCAGATGCATATTATTAGTCTGAACCTATCTGGATCAGGACTATCAGGTTCCATCCCACATGAGCTTTGGAACCTCACTTCAATCCAAACACTTGATTTGTCATCAAATTCCTTCACCGGCTCACTTCCACCTGAGCTCCGCCAGCTTCAAAATCTTAAAGCACTTCTCCTATTCTCCAATTTTCTCTCCGGTGAGATTCCTGAGGAAATAAGTGCTTTGAAGAACTTGCAAGTTCTAAGAATAGGAGATAACATGATATCAGGTGTGATTCCACCAAGCATTGGCAACTTGACTGACTTGAGGGTGTTGGGGCTTGCCTATTGCCAATTAAATGGAAGCATTCCAGTTGAAATTGGTATTTTGAAGCATCTAATATCTCTCGACTTGCAGAACAATAGTCTCAGTGGCCTCATACCAGAAGAGATTCATGGCTGCGAAGAGCTTGAGAACTTTGCAGCATCAAACAACAAGCTTGAAGGGGACATCCCTTTGATGGAATCACTTGAATCACTGCAAATTCTCAACCTGGCTAACAACAGCCTTTCTGGATCAATTCCTACCGCATTAAGTCAGCTCCACAATTTGAAGTACTTGAATCTGCTTGGAAACAGATTGAGTGGCGCCATTCCTTCGGAGCTTAACCAGTTGGTTCAACTTGAGATGCTTGACTTATCAAGGAACAATCTCTCAGGCAGCATACAACTTCTCAGCACACAATTAAAGAATCTTGCAGCTTTGGTTCTGTCTGATAATGCTTTGACAGGTACCGTTCCAACCAACTTCTGCACAAGAGGTTCTTCAAATCTTCGACAACTTCTTCTGGCTCGAAACAAGCTCTCTGGAGAGTTTCCTTTGGCAGTGCTGAGCTGTTCCTCGCTCCAACAGCTAGATCTTTCAGATAATCATTTTGGAGGGGAACTACCTACTTCCCTGGACAAACTAGGGAATCTCACAGATCTTGTGCTCAACAATAACAGCTTCACAGGAACTCTACATCCTGAAATCGGAAACTTGAGTTCCTTGGAAAATCTATTTCTGTTTCACAACATGATCACAGGTGGAATTCCGGTGGAGATAGGAAAGCTGCAGAGGCTGAAAACCATCTACCTTTACGACAACCAGATGTCAGGACCGATACCAAGTGAGTTAACCAACTGCTCAAGCTTGACAGCAATTGATTTCTTTGGCAACCGTTTCTCAGGCTCCATCCCGGCCACAATCGGAAAACTCAAGAACCTTTTTTTGCTCCAGCTGAGGCAGAATGACTTGTCTGGTCCGATTCCACCAAGCTTAGGCTACTGCAAAAGCCTTCAGTTATTGGCCTTAGCTGATAACAAGCTCTCAGGAACATTGCCACCCACATTCAGATTCATTTCTCAACTAAGCACCATTACTCTTTACAACAACTCCTTTCAAGGCCCTCTTCCTCAATCTCTTTTTCTTCTCAAAAACCTCAAGATCATAAATTTCTCTCACAATCGGTTTAGTGGAACCATCTTCCCTCTCTCTGGTTCAAGTTATCTGACAGCAATGGACTTGACCAACAATAGCTTTTCGGGTTCCATCCCTTCTGGACTTTCCATGTGCAGAAATTTAACCCGTCTCCGCCTTGCACATAATCTCCTCACTGGAACCATGCCTTCCGAATTTGGCCAACTCACACAGCTCAACTTTCTTGACTTGTCATTCAACAACCTCACAGATGAAATCCCGCCTCAGTTGTCTTCTTGTAAGAAACTTGAGCATTTCTTAGTTAACAATAACCAATTCACGGGAGCAATACCTCCATGGTTAGGTAGCCTTCAAGAACTAGGAGAACTAGACTTCTCGTCTAACAACTTTCATGGAACAGTACCTGCAGAGCTTGGAAACTGTTCAAAACTACTCAAGCTTTATCTGCATGACAACAGTCTCTCCAGTATTATCCCAGCGGAGATAGGAAATCTCACTTCTCTCAATGTCCTAAATCTTCAGAGAAACAATTTTTCGGGGTCTATTCCATCGACAATCCAGAACTGCAAGAAGCTTTATGAACTGAGGCTGTCAGAGAACTTGTTGACAGGTTTGATCCCATATGAGCTTGGAGAGTTAACCGAACTGCAAGTAATCCTGGATCTAAGCACAAACTTGTTCTCCGGTGAAATCCCATCTTCTCTAGGAGATCTAATGAAGTTGGAGAGACTGAACCTCTCTTTCAATCAGCTCCAAGGAAGAGTTCCTGCTTCACTTGGGAAGCTGACCAGTCTTCACATGTTGAACCTGTCAAATAATCATCTTGAGGGCCAAATCCCTTCAACCTTTTCAGGATTCCCACTGAGCTCTTTCTTAGGTAATGATCACAAGCTTTGCGGCCCACCATTAGCATCGTGTGGGGAATCTGAGGCCCAGAAGGTAAAGCGCCTTTCACGTACTGCAGCAACTGGTATTACAGTGGCCATTGTGTTAACTTCCACAGCAATATGCTTGGTGATGATTTACATCATGCTGAGGATATGGTGCAAGTGGAGAAAAGTTTTGATTTCAAACTCAGATGCTTCCGGTGGAAAAGAAGAGGAGAAATGGGGATTTGGGAATGAGAAGAAGAGGGTTGGTGAGTACTGGAAAGTGAATTCTGTGGCGCAGGTGCCTTCAGAAACTGCAGAAATGAAGAAACAGAATAATGCATCATTCTACACCACCACCTCAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

968

Amino Acids

105.69

Weight (kDa)

6.09

Isoelectric Point (pI)

35.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRRNT_2	PF08263	32 - 70	4.7e-09	Leucine rich repeat N-terminal domain
LRR_14	PF23598	78 - 177	2.4e-09	Leucine-rich repeat region
LRR_14	PF23598	165 - 251	2.9e-07	Leucine-rich repeat region
LRR_8	PF13855	242 - 301	1.4e-07	Leucine rich repeat
LRR_14	PF23598	340 - 440	3.8e-07	Leucine-rich repeat region
LRR_14	PF23598	572 - 705	8.6e-07	Leucine-rich repeat region
LRR_8	PF13855	579 - 638	1.2e-06	Leucine rich repeat
LRR_14	PF23598	694 - 830	5.3e-11	Leucine-rich repeat region
LRR_8	PF13855	775 - 831	7.6e-06	Leucine rich repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016843)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g05610
malus_domestica	MD06G1171800.v1.1
prunus_persica	Prupe.5G170700_v2.0.a1 Prupe.5G170700_v2.0.a1
rosa_chinensis	RchiOBHm_Chr7g0193201
rosa_laevigata	RLG00000004287
rosa_multiflora	Rmu_ssc0000092.1_g000027
rosa_roxburghii	Rroxscaffold_3G00262290
rosa_rugosa	Rorug07G0008300
rosa_samantha	Rh7AG133700 Rh7BG134700 Rh7CG137600 Rh7DG135700
rosa_wichuraiana	Rw7G011430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	2827
Acc36I	ACCTGC	2 cut(s)	2080, 2827
Acc65I	GGTACC	1 cut(s)	980
AccB1I	GGYRCC	3 cut(s)	836, 980, 2839
AccB7I	CCANNNNNTGG	1 cut(s)	497
AciI	CCGC	6 cut(s)	355, 777, 1822, 1928, 2147, 2565
AclWI	GGATC	5 cut(s)	134, 256, 772, 2278, 2337
AcoI	YGGCCR	3 cut(s)	1428, 1867, 2649
AcsI	RAATTY	7 cut(s)	322, 732, 1278, 1681, 1807, 1862, 2824
AcuI	CTGAAG	3 cut(s)	1511, 2171, 2829
AcyI	GRCGYC	1 cut(s)	837
AfaI	GTAC	5 cut(s)	806, 982, 2070, 2626, 2813
AfiI	CCNNNNNNNGG	7 cut(s)	497, 709, 1220, 1508, 1724, 1987, 2009
AflIII	ACRYGT	1 cut(s)	2466
AhdI	GACNNNNNGTC	1 cut(s)	2044
AjnI	CCWGG	4 cut(s)	82, 741, 1146, 2325
AjuI	GAANNNNNNNTTGG	2 cut(s)	2415, 2447
AloI	GAACNNNNNNTCC	2 cut(s)	1195, 1227
Alw21I	GWGCWC	4 cut(s)	178, 354, 1182, 2537
Alw26I	GTCTC	7 cut(s)	36, 93, 171, 620, 1823, 2132, 2389
AlwI	GGATC	5 cut(s)	134, 256, 772, 2278, 2337
AlwNI	CAGNNNCTG	4 cut(s)	1309, 2072, 2636, 2852
ApeKI	GCWGC	6 cut(s)	648, 671, 909, 947, 1300, 2630
ApoI	RAATTY	7 cut(s)	322, 732, 1278, 1681, 1807, 1862, 2824
Asp700I	GAANNNNTTC	2 cut(s)	639, 2089
Asp718I	GGTACC	1 cut(s)	980
AspLEI	GCGC	3 cut(s)	839, 2616, 2836
AspS9I	GGNCC	6 cut(s)	1346, 1490, 1634, 2497, 2567, 2599
AsuC2I	CCSGG	1 cut(s)	1427
AsuHPI	GGTGA	5 cut(s)	322, 419, 2366, 2695, 2819
AvaII	GGWCC	2 cut(s)	1346, 1490
AxyI	CCTNAGG	1 cut(s)	417
BalI	TGGCCA	2 cut(s)	1869, 2651
BanI	GGYRCC	3 cut(s)	836, 980, 2839
BanII	GRGCYC	3 cut(s)	178, 354, 2537
BbsI	GAAGAC	3 cut(s)	104, 1932, 2453
Bbv12I	GWGCWC	4 cut(s)	178, 354, 1182, 2537
BbvCI	CCTCAGC	2 cut(s)	1469, 2702
BbvI	GCAGC	6 cut(s)	635, 683, 921, 959, 1287, 2642
BceAI	ACGGC	1 cut(s)	93
BciT130I	CCWGG	4 cut(s)	84, 743, 1148, 2327
BclI	TGATCA	3 cut(s)	214, 1266, 2551
BcnI	CCSGG	1 cut(s)	1427
BcoDI	GTCTC	7 cut(s)	36, 93, 171, 620, 1823, 2132, 2389
BfaI	CTAG	5 cut(s)	1103, 1157, 2027, 2036, 2372
BfmI	CTRYAG	4 cut(s)	1301, 2073, 2628, 2853
BfoI	RGCGCY	2 cut(s)	840, 2617
BfuAI	ACCTGC	2 cut(s)	2080, 2827
BglII	AGATCT	3 cut(s)	1105, 1171, 2377
BisI	GCNGC	7 cut(s)	649, 672, 910, 948, 1301, 2566, 2631
BlpI	GCTNAGC	1 cut(s)	1079
BlsI	GCNGC	7 cut(s)	650, 673, 911, 949, 1302, 2567, 2632
BmcAI	AGTACT	2 cut(s)	806, 2813
Bme1390I	CCNGG	5 cut(s)	84, 743, 1148, 1427, 2327
Bme18I	GGWCC	2 cut(s)	1346, 1490
BmeRI	GACNNNNNGTC	1 cut(s)	2044
BmgT120I	GGNCC	6 cut(s)	1346, 1490, 1634, 2497, 2567, 2599
BmiI	GGNNCC	9 cut(s)	265, 287, 838, 982, 1420, 1708, 1777, 1849, 2841
BmrFI	CCNGG	5 cut(s)	84, 743, 1148, 1427, 2327
BmsI	GCATC	7 cut(s)	210, 592, 683, 867, 2588, 2737, 2888
BoxI	GACNNNNGTC	1 cut(s)	2124
BpiI	GAAGAC	3 cut(s)	104, 1932, 2453
BpmI	CTGGAG	5 cut(s)	88, 105, 1077, 1448, 2116
Bpu10I	CCTNAGC	5 cut(s)	348, 1469, 1507, 1540, 2702
Bpu1102I	GCTNAGC	1 cut(s)	1079
BpuMI	CCSGG	1 cut(s)	1427
BsaAI	YACGTR	1 cut(s)	2624
BsaBI	GATNNNNATC	1 cut(s)	2693
BsaHI	GRCGYC	1 cut(s)	837
BsaI	GGTCTC	1 cut(s)	171
BsaJI	CCNNGG	4 cut(s)	1146, 1236, 2003, 2422
BsaWI	WCCGGW	4 cut(s)	404, 1282, 2351, 2753
Bsc4I	CCNNNNNNNGG	7 cut(s)	497, 709, 1220, 1508, 1724, 1987, 2009
Bse118I	RCCGGY	1 cut(s)	332
Bse1I	ACTGG	8 cut(s)	167, 560, 859, 1849, 2133, 2457, 2641, 2819
Bse21I	CCTNAGG	1 cut(s)	417
Bse3DI	GCAATG	2 cut(s)	1565, 1752
Bse8I	GATNNNNATC	1 cut(s)	2693
BseBI	CCWGG	4 cut(s)	84, 743, 1148, 2327
BseDI	CCNNGG	4 cut(s)	1146, 1236, 2003, 2422
BseGI	GGATG	5 cut(s)	267, 699, 1210, 1422, 1779
BseJI	GATNNNNATC	1 cut(s)	2693
BseLI	CCNNNNNNNGG	7 cut(s)	497, 709, 1220, 1508, 1724, 1987, 2009
BseMI	GCAATG	2 cut(s)	1565, 1752
BseNI	ACTGG	8 cut(s)	167, 560, 859, 1849, 2133, 2457, 2641, 2819
BseRI	GAGGAG	2 cut(s)	1829, 2783
BseXI	GCAGC	6 cut(s)	635, 683, 921, 959, 1287, 2642
BseYI	CCCAGC	1 cut(s)	2143
BsgI	GTGCAG	2 cut(s)	985, 1822
BshNI	GGYRCC	3 cut(s)	836, 980, 2839
BsiHKAI	GWGCWC	4 cut(s)	178, 354, 1182, 2537
BsiSI	CCGG	6 cut(s)	333, 405, 1283, 1427, 2352, 2754
BslFI	GGGAC	1 cut(s)	710
BslI	CCNNNNNNNGG	7 cut(s)	497, 709, 1220, 1508, 1724, 1987, 2009
BsmAI	GTCTC	7 cut(s)	36, 93, 171, 620, 1823, 2132, 2389
BsmBI	CGTCTC	1 cut(s)	1823
BsmFI	GGGAC	1 cut(s)	710
BsmI	GAATGC	1 cut(s)	555
Bso31I	GGTCTC	1 cut(s)	171
Bsp1286I	GDGCHC	4 cut(s)	178, 354, 1182, 2537
Bsp1720I	GCTNAGC	1 cut(s)	1079
Bsp19I	CCATGG	1 cut(s)	2003
BspACI	CCGC	6 cut(s)	355, 777, 1822, 1928, 2147, 2565
BspLI	GGNNCC	9 cut(s)	265, 287, 838, 982, 1420, 1708, 1777, 1849, 2841
BspMAI	CTGCAG	4 cut(s)	1305, 2077, 2632, 2857
BspMI	ACCTGC	2 cut(s)	2080, 2827
BspPI	GGATC	5 cut(s)	134, 256, 772, 2278, 2337
BspQI	GCTCTTC	1 cut(s)	648
BspT107I	GGYRCC	3 cut(s)	836, 980, 2839
BspTNI	GGTCTC	1 cut(s)	171
BsrDI	GCAATG	2 cut(s)	1565, 1752
BsrFI	RCCGGY	1 cut(s)	332
BsrI	ACTGG	8 cut(s)	167, 560, 859, 1849, 2133, 2457, 2641, 2819
BssAI	RCCGGY	1 cut(s)	332
BssECI	CCNNGG	4 cut(s)	1146, 1236, 2003, 2422
BssNI	GRCGYC	1 cut(s)	837
BssT1I	CCWWGG	3 cut(s)	1236, 2003, 2422
Bst2UI	CCWGG	4 cut(s)	84, 743, 1148, 2327
Bst4CI	ACNGT	6 cut(s)	985, 1409, 2068, 2090, 2126, 2647
Bst6I	CTCTTC	6 cut(s)	630, 648, 1644, 2422, 2760, 2792
BstACI	GRCGYC	1 cut(s)	837
BstBAI	YACGTR	1 cut(s)	2624
BstC8I	GCNNGC	2 cut(s)	359, 531
BstDSI	CCRYGG	1 cut(s)	2003
BstF5I	GGATG	5 cut(s)	267, 699, 1210, 1422, 1779
BstH2I	RGCGCY	2 cut(s)	840, 2617
BstHHI	GCGC	3 cut(s)	839, 2616, 2836
BstMAI	GTCTC	7 cut(s)	36, 93, 171, 620, 1823, 2132, 2389
BstMWI	GCNNNNNNNGC	4 cut(s)	358, 1099, 1306, 2113
BstNI	CCWGG	4 cut(s)	84, 743, 1148, 2327
BstNSI	RCATGY	1 cut(s)	2470
BstPAI	GACNNNNGTC	1 cut(s)	2124
BstSCI	CCNGG	5 cut(s)	82, 741, 1146, 1425, 2325
BstSFI	CTRYAG	4 cut(s)	1301, 2073, 2628, 2853
BstV1I	GCAGC	6 cut(s)	635, 683, 921, 959, 1287, 2642
BstV2I	GAAGAC	3 cut(s)	104, 1932, 2453
BstX2I	RGATCY	5 cut(s)	139, 1105, 1171, 2329, 2377
BstXI	CCANNNNNNTGG	1 cut(s)	548
BstYI	RGATCY	5 cut(s)	139, 1105, 1171, 2329, 2377
Bsu36I	CCTNAGG	1 cut(s)	417
BtgI	CCRYGG	1 cut(s)	2003
BtsCI	GGATG	5 cut(s)	267, 699, 1210, 1422, 1779
BtsI	GCAGTG	2 cut(s)	725, 1080
BtsIMutI	CAGTG	6 cut(s)	625, 725, 1080, 1842, 2528, 2652
BveI	ACCTGC	2 cut(s)	2080, 2827
Cac8I	GCNNGC	2 cut(s)	359, 531
CaiI	CAGNNNCTG	4 cut(s)	1309, 2072, 2636, 2852
CfoI	GCGC	3 cut(s)	839, 2616, 2836
Cfr10I	RCCGGY	1 cut(s)	332
Cfr13I	GGNCC	6 cut(s)	1346, 1490, 1634, 2497, 2567, 2599
Csp6I	GTAC	5 cut(s)	805, 981, 2069, 2625, 2812
CviQI	GTAC	5 cut(s)	805, 981, 2069, 2625, 2812
DinI	GGCGCC	1 cut(s)	838
DriI	GACNNNNNGTC	1 cut(s)	2044
EaeI	YGGCCR	3 cut(s)	1428, 1867, 2649
Eam1104I	CTCTTC	6 cut(s)	630, 648, 1644, 2422, 2760, 2792
Eam1105I	GACNNNNNGTC	1 cut(s)	2044
EarI	CTCTTC	6 cut(s)	630, 648, 1644, 2422, 2760, 2792
EciI	GGCGGA	2 cut(s)	344, 1811
Ecl136II	GAGCTC	3 cut(s)	176, 352, 2535
Eco130I	CCWWGG	3 cut(s)	1236, 2003, 2422
Eco24I	GRGCYC	3 cut(s)	178, 354, 2537
Eco31I	GGTCTC	1 cut(s)	171
Eco32I	GATATC	1 cut(s)	474
Eco47I	GGWCC	2 cut(s)	1346, 1490
Eco53kI	GAGCTC	3 cut(s)	176, 352, 2535
Eco57I	CTGAAG	3 cut(s)	1511, 2171, 2829
Eco81I	CCTNAGG	1 cut(s)	417
EcoICRI	GAGCTC	3 cut(s)	176, 352, 2535
EcoO109I	RGGNCCY	1 cut(s)	1634
EcoRI	GAATTC	2 cut(s)	1278, 2824
EcoRII	CCWGG	4 cut(s)	82, 741, 1146, 2325
EcoRV	GATATC	1 cut(s)	474
EcoT14I	CCWWGG	3 cut(s)	1236, 2003, 2422
EcoT22I	ATGCAT	3 cut(s)	6, 225, 2881
EcoT38I	GRGCYC	3 cut(s)	178, 354, 2537
EgeI	GGCGCC	1 cut(s)	838
EheI	GGCGCC	1 cut(s)	838
ErhI	CCWWGG	3 cut(s)	1236, 2003, 2422
Esp3I	CGTCTC	1 cut(s)	1823
FalI	AAGNNNNNCTT	4 cut(s)	997, 1029, 1623, 1655
FaqI	GGGAC	1 cut(s)	710
FauI	CCCGC	1 cut(s)	1935
FauNDI	CATATG	1 cut(s)	2290
FbaI	TGATCA	3 cut(s)	214, 1266, 2551
Fnu4HI	GCNGC	7 cut(s)	649, 672, 910, 948, 1301, 2566, 2631
FokI	GGATG	5 cut(s)	254, 686, 1197, 1409, 1766
FriOI	GRGCYC	3 cut(s)	178, 354, 2537
Fsp4HI	GCNGC	7 cut(s)	649, 672, 910, 948, 1301, 2566, 2631
FspBI	CTAG	5 cut(s)	1103, 1157, 2027, 2036, 2372
GlaI	GCGC	3 cut(s)	838, 2615, 2835
GluI	GCNGC	7 cut(s)	649, 672, 910, 948, 1301, 2566, 2631
GsaI	CCCAGC	1 cut(s)	2147
GsuI	CTGGAG	5 cut(s)	88, 105, 1077, 1448, 2116
HaeII	RGCGCY	2 cut(s)	840, 2617
HapII	CCGG	6 cut(s)	333, 405, 1283, 1427, 2352, 2754
HhaI	GCGC	3 cut(s)	839, 2616, 2836
Hin1I	GRCGYC	1 cut(s)	837
Hin6I	GCGC	3 cut(s)	837, 2614, 2834
HinP1I	GCGC	3 cut(s)	837, 2614, 2834
HincII	GTYRAC	5 cut(s)	1365, 1972, 2274, 2307, 2661
HindII	GTYRAC	5 cut(s)	1365, 1972, 2274, 2307, 2661
HindIII	AAGCTT	6 cut(s)	686, 1378, 1504, 2105, 2240, 2558
HpaI	GTTAAC	4 cut(s)	1365, 1972, 2307, 2661
HpaII	CCGG	6 cut(s)	333, 405, 1283, 1427, 2352, 2754
HphI	GGTGA	5 cut(s)	322, 419, 2366, 2695, 2819
Hpy166II	GTNNAC	5 cut(s)	1365, 1972, 2274, 2307, 2661
Hpy8I	GTNNAC	5 cut(s)	1365, 1972, 2274, 2307, 2661
HpyCH4III	ACNGT	6 cut(s)	985, 1409, 2068, 2090, 2126, 2647
HpyCH4IV	ACGT	1 cut(s)	2623
HpyF10VI	GCNNNNNNNGC	4 cut(s)	358, 1099, 1306, 2113
HpySE526I	ACGT	1 cut(s)	2623
Hsp92I	GRCGYC	1 cut(s)	837
HspAI	GCGC	3 cut(s)	837, 2614, 2834
KasI	GGCGCC	1 cut(s)	836
KpnI	GGTACC	1 cut(s)	984
Ksp22I	TGATCA	3 cut(s)	214, 1266, 2551
KspAI	GTTAAC	4 cut(s)	1365, 1972, 2307, 2661
LguI	GCTCTTC	1 cut(s)	648
LmnI	GCTCC	9 cut(s)	85, 357, 795, 850, 1098, 1424, 1467, 1991, 2424
Lsp1109I	GCAGC	6 cut(s)	635, 683, 921, 959, 1287, 2642
LweI	GCATC	7 cut(s)	210, 592, 683, 867, 2588, 2737, 2888
MaeI	CTAG	5 cut(s)	1103, 1157, 2027, 2036, 2372
MaeII	ACGT	1 cut(s)	2623
MfeI	CAATTG	1 cut(s)	1389
MflI	RGATCY	5 cut(s)	139, 1105, 1171, 2329, 2377
MhlI	GDGCHC	4 cut(s)	178, 354, 1182, 2537
MlsI	TGGCCA	2 cut(s)	1869, 2651
MluNI	TGGCCA	2 cut(s)	1869, 2651
Mly113I	GGCGCC	1 cut(s)	837
MlyI	GAGTC	1 cut(s)	95
MmeI	TCCRAC	4 cut(s)	170, 1013, 1120, 2370
Mox20I	TGGCCA	2 cut(s)	1869, 2651
Mph1103I	ATGCAT	3 cut(s)	6, 225, 2881
MroXI	GAANNNNTTC	2 cut(s)	639, 2089
MscI	TGGCCA	2 cut(s)	1869, 2651
MslI	CAYNNNNRTG	1 cut(s)	26
Msp20I	TGGCCA	2 cut(s)	1869, 2651
MspA1I	CMGCKG	2 cut(s)	1468, 2147
MspI	CCGG	6 cut(s)	333, 405, 1283, 1427, 2352, 2754
MspR9I	CCNGG	5 cut(s)	84, 743, 1148, 1427, 2327
MunI	CAATTG	1 cut(s)	1389
Mva1269I	GAATGC	1 cut(s)	555
MvaI	CCWGG	4 cut(s)	84, 743, 1148, 2327
MwoI	GCNNNNNNNGC	4 cut(s)	358, 1099, 1306, 2113
NarI	GGCGCC	1 cut(s)	837
NciI	CCSGG	1 cut(s)	1427
NcoI	CCATGG	1 cut(s)	2003
NdeI	CATATG	1 cut(s)	2290
NlaIV	GGNNCC	9 cut(s)	265, 287, 838, 982, 1420, 1708, 1777, 1849, 2841
NsiI	ATGCAT	3 cut(s)	6, 225, 2881
NspI	RCATGY	1 cut(s)	2470
PaqCI	CACCTGC	1 cut(s)	2827
PciI	ACATGT	1 cut(s)	2466
PciSI	GCTCTTC	1 cut(s)	648
PctI	GAATGC	1 cut(s)	555
PdmI	GAANNNNTTC	2 cut(s)	639, 2089
PflMI	CCANNNNNTGG	1 cut(s)	497
PfoI	TCCNGGA	2 cut(s)	82, 2325
PkrI	GCNGC	7 cut(s)	650, 673, 911, 949, 1302, 2567, 2632
PleI	GAGTC	1 cut(s)	95
PluTI	GGCGCC	1 cut(s)	840
PpsI	GAGTC	1 cut(s)	95
Ppu21I	YACGTR	1 cut(s)	2624
PscI	ACATGT	1 cut(s)	2466
PshAI	GACNNNNGTC	1 cut(s)	2124
Psp124BI	GAGCTC	3 cut(s)	178, 354, 2537
Psp6I	CCWGG	4 cut(s)	82, 741, 1146, 2325
PspFI	CCCAGC	1 cut(s)	2143
PspGI	CCWGG	4 cut(s)	82, 741, 1146, 2325
PspN4I	GGNNCC	9 cut(s)	265, 287, 838, 982, 1420, 1708, 1777, 1849, 2841
PspPI	GGNCC	6 cut(s)	1346, 1490, 1634, 2497, 2567, 2599
PstI	CTGCAG	4 cut(s)	1305, 2077, 2632, 2857
PstNI	CAGNNNCTG	4 cut(s)	1309, 2072, 2636, 2852
PsuI	RGATCY	5 cut(s)	139, 1105, 1171, 2329, 2377
PvuII	CAGCTG	1 cut(s)	1468
RsaI	GTAC	5 cut(s)	806, 982, 2070, 2626, 2813
RsaNI	GTAC	5 cut(s)	805, 981, 2069, 2625, 2812
RseI	CAYNNNNRTG	1 cut(s)	26
SacI	GAGCTC	3 cut(s)	178, 354, 2537
SapI	GCTCTTC	1 cut(s)	648
SatI	GCNGC	7 cut(s)	649, 672, 910, 948, 1301, 2566, 2631
Sau96I	GGNCC	6 cut(s)	1346, 1490, 1634, 2497, 2567, 2599
ScaI	AGTACT	2 cut(s)	806, 2813
SchI	GAGTC	1 cut(s)	95
ScrFI	CCNGG	5 cut(s)	84, 743, 1148, 1427, 2327
SduI	GDGCHC	4 cut(s)	178, 354, 1182, 2537
SfaNI	GCATC	7 cut(s)	210, 592, 683, 867, 2588, 2737, 2888
SfcI	CTRYAG	4 cut(s)	1301, 2073, 2628, 2853
SfoI	GGCGCC	1 cut(s)	838
SinI	GGWCC	2 cut(s)	1346, 1490
SmiMI	CAYNNNNRTG	1 cut(s)	26
SsiI	CCGC	6 cut(s)	355, 777, 1822, 1928, 2147, 2565
SspDI	GGCGCC	1 cut(s)	836
SspMI	CTAG	5 cut(s)	1103, 1157, 2027, 2036, 2372
SstI	GAGCTC	3 cut(s)	178, 354, 2537
StyD4I	CCNGG	5 cut(s)	82, 741, 1146, 1425, 2325
StyI	CCWWGG	3 cut(s)	1236, 2003, 2422
TaaI	ACNGT	6 cut(s)	985, 1409, 2068, 2090, 2126, 2647
TaiI	ACGT	1 cut(s)	2626
TaqI	TCGA	5 cut(s)	95, 597, 1024, 1042, 2219
TaqII	GACCGA	1 cut(s)	1363
TatI	WGTACW	2 cut(s)	804, 2811
TauI	GCSGC	1 cut(s)	2568
TscAI	CASTG	6 cut(s)	625, 732, 1080, 1849, 2535, 2652
TseI	GCWGC	6 cut(s)	648, 671, 909, 947, 1300, 2630
TspDTI	ATGAA	9 cut(s)	28, 50, 632, 1576, 1935, 2048, 2262, 2399, 2876
TspRI	CASTG	6 cut(s)	625, 732, 1080, 1849, 2535, 2652
Van91I	CCANNNNNTGG	1 cut(s)	497
VpaK11BI	GGWCC	2 cut(s)	1346, 1490
XapI	RAATTY	7 cut(s)	322, 732, 1278, 1681, 1807, 1862, 2824
XceI	RCATGY	1 cut(s)	2470
XcmI	CCANNNNNNNNNTGG	1 cut(s)	279
XmnI	GAANNNNTTC	2 cut(s)	639, 2089
XspI	CTAG	5 cut(s)	1103, 1157, 2027, 2036, 2372
ZrmI	AGTACT	2 cut(s)	806, 2813
Zsp2I	ATGCAT	3 cut(s)	6, 225, 2881

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.