Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0016216

Physical Location & Seq

Genomic Coordinates Forward (+)

702903 .. 705211

Gene Structure 2309 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0008300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGCAGTATATGGGCGTGTACGTCGTCGTAATGAGGTGGTTGCTCTGGTTGTGGGTGGTTTGCATGTCAGTGTCAGCTCAGCTTCACCGGTTTGAGCACCCCGTCGTCAAAACCGATGACTCCCTGAGCTTTCTGGCCGTCGGAGATTGGGGACGAAGAGGCGCTTACAATCAATCTCTAATCGCTCATCAGATGGGAATAATCGGAGAGAAATTAAACATAGACTTTGTGGTCTCAACTGGGGATAACTTTTACAAGACGGGATTGACCAGCGTAAACGACCCCAAGTATCCCGAGTCCTTTACTCAAATCTACACTGCTCAGAGCCTCCAAAAACAATGGTACATTGTACTTGGGAACCATGACTACAGGGGAAATGCTTTGGCACAGCTGAGTCCGGTTCTTCGGAAGATGGACAGCCGGTGGCTTTGCCTGAGGTCATTTCTCGTCAACACGAAAATTGCAGACTTCTTCTTCATCGACACCAATCCATTTGTGGACAAGTACTGGTCCAACCCAAAGCACTACAAGCACGATTGGAGAGGTGTCGTTCCTAGGCAGCGCTACCTCTCTACCCTCTTGAAGGATCTGGATTTTGCATTGAGAAATTCTACTGCAAACTGGAAGATTGTCGTTGCACATCATACAATCAGAAGCGTAGGGCATCACGGGGATACCCAGGAAATAGTAGACCAGATTCTTCCCATTCTCGAGGCAAATAATGTTAGAGCCTACATAAACGGACATGACCACTGCTTGGAACACATAAGTAGCCCCAAGGGCCAAATACAATTCTTGACTACTGGTGGTGGCTCCAAGGCATGGAAAGGTGACCTCTCTAGGTTGAATCAAGGCGGGTATGAGTTTTACTACGATGGGCAAGGCTTCCTCTCTGCTCAAATTCGACCAACCGATGCAGAATTTGCATTCTACGATGTTTCCGGTAGAGTTTTGCATCGTTTCAATATATCCAATTCCAAGGGGCTTCACAGTTCCATATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001704 GO:0001706 GO:0003006 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0006810 GO:0006833 GO:0006950 GO:0007275 GO:0007369 GO:0007389 GO:0007492 GO:0008104 GO:0008150 GO:0009505 GO:0009531 GO:0009611 GO:0009653 GO:0009790 GO:0009791 GO:0009793 GO:0009798 GO:0009888 GO:0009987 GO:0010154 GO:0010453 GO:0010470 GO:0016020 GO:0022414 GO:0022603 GO:0030104 GO:0030154 GO:0030312 GO:0032501 GO:0032502 GO:0033036 GO:0035987 GO:0042044 GO:0042592 GO:0042659 GO:0044426 GO:0044462 GO:0044464 GO:0045184 GO:0045595 GO:0045995 GO:0048226 GO:0048316 GO:0048598 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0048869 GO:0048878 GO:0050789 GO:0050793 GO:0050794 GO:0050801 GO:0050896 GO:0051179 GO:0051234 GO:0051239 GO:0051302 GO:0055065 GO:0055067 GO:0055075 GO:0055080 GO:0061458 GO:0065001 GO:0065007 GO:0065008 GO:0071944 GO:0090558 GO:0090708 GO:0098771 GO:0099402 GO:1903224 GO:1905392 GO:1905421 GO:2000026 GO:2000067 GO:2000280

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRRNT_2 LRR_1 LRR_4 LRR_8

Protein Analysis

333

Amino Acids

38.2

Weight (kDa)

8.95

Isoelectric Point (pI)

40.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos	PF00149	43 - 252	1.6e-17	Calcineurin-like phosphoesterase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0016216)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G63030
fragaria_vesca	FvH4_5g05560
malus_domestica	MD14G1176900.v1.1
prunus_persica	Prupe.5G170800_v2.0.a1
pyrus_communis	pycom14g14770
rosa_chinensis	RchiOBHm_Chr7g0193211
rosa_laevigata	RLG00000004286
rosa_multiflora	Rmu_ssc0000092.1_g000022
rosa_roxburghii	Rroxscaffold_3G00262280
rosa_rugosa	Rorug07G0008300
rosa_samantha	Rh7AG133800 Rh7BG134800 Rh7CG137700 Rh7DG135800
rosa_wichuraiana	Rw7G011440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
AccB7I	CCANNNNNTGG	2 cut(s)	757, 822
AccI	GTMKAC	1 cut(s)	690
AciI	CCGC	1 cut(s)	855
AclWI	GGATC	1 cut(s)	594
AcoI	YGGCCR	1 cut(s)	135
AcsI	RAATTY	3 cut(s)	607, 900, 920
AfaI	GTAC	4 cut(s)	20, 344, 351, 506
AfeI	AGCGCT	1 cut(s)	563
AfiI	CCNNNNNNNGG	3 cut(s)	583, 757, 822
AgeI	ACCGGT	1 cut(s)	87
AgsI	TTSAA	3 cut(s)	583, 847, 964
AjnI	CCWGG	1 cut(s)	678
AluBI	AGCT	4 cut(s)	77, 82, 129, 391
AluI	AGCT	4 cut(s)	77, 82, 129, 391
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	238
AlwI	GGATC	1 cut(s)	594
Ama87I	CYCGRG	2 cut(s)	293, 710
Aor51HI	AGCGCT	1 cut(s)	563
AoxI	GGCC	2 cut(s)	135, 781
ApeKI	GCWGC	1 cut(s)	559
ApoI	RAATTY	3 cut(s)	607, 900, 920
AsiGI	ACCGGT	1 cut(s)	87
AspA2I	CCTAGG	1 cut(s)	554
AspLEI	GCGC	2 cut(s)	164, 564
AspS9I	GGNCC	2 cut(s)	510, 781
AsuHPI	GGTGA	2 cut(s)	77, 842
AvaI	CYCGRG	2 cut(s)	293, 710
AvaII	GGWCC	1 cut(s)	510
AvrII	CCTAGG	1 cut(s)	554
AxyI	CCTNAGG	1 cut(s)	434
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	571
BccI	CCATC	3 cut(s)	187, 406, 869
BceAI	ACGGC	1 cut(s)	122
BciT130I	CCWGG	1 cut(s)	680
BciVI	GTATCC	2 cut(s)	300, 667
BcoDI	GTCTC	1 cut(s)	238
BfaI	CTAG	2 cut(s)	555, 840
BfmI	CTRYAG	1 cut(s)	367
BfoI	RGCGCY	2 cut(s)	165, 565
BfuI	GTATCC	2 cut(s)	300, 667
BglI	GCCNNNNNGGC	1 cut(s)	780
BisI	GCNGC	1 cut(s)	560
BlnI	CCTAGG	1 cut(s)	554
BlpI	GCTNAGC	1 cut(s)	78
BlsI	GCNGC	1 cut(s)	561
BmcAI	AGTACT	1 cut(s)	506
Bme1390I	CCNGG	1 cut(s)	680
Bme18I	GGWCC	1 cut(s)	510
BmeT110I	CYCGRG	2 cut(s)	293, 710
BmgT120I	GGNCC	2 cut(s)	510, 781
BmiI	GGNNCC	2 cut(s)	359, 814
BmrFI	CCNGG	1 cut(s)	680
BmrI	ACTGGG	1 cut(s)	249
BmsI	GCATC	3 cut(s)	673, 904, 964
BmuI	ACTGGG	1 cut(s)	249
Bpu10I	CCTNAGC	1 cut(s)	125
Bpu1102I	GCTNAGC	1 cut(s)	78
BsaI	GGTCTC	1 cut(s)	238
BsaJI	CCNNGG	5 cut(s)	554, 678, 777, 816, 978
BsaWI	WCCGGW	3 cut(s)	87, 397, 941
Bsc4I	CCNNNNNNNGG	3 cut(s)	583, 757, 822
Bse118I	RCCGGY	2 cut(s)	87, 420
Bse1I	ACTGG	4 cut(s)	244, 512, 626, 808
Bse21I	CCTNAGG	1 cut(s)	434
BseBI	CCWGG	1 cut(s)	680
BseDI	CCNNGG	5 cut(s)	554, 678, 777, 816, 978
BseLI	CCNNNNNNNGG	3 cut(s)	583, 757, 822
BseMII	CTCAG	5 cut(s)	92, 116, 335, 383, 425
BseNI	ACTGG	4 cut(s)	244, 512, 626, 808
BseXI	GCAGC	1 cut(s)	571
BshFI	GGCC	2 cut(s)	137, 783
BshTI	ACCGGT	1 cut(s)	87
BsiHKAI	GWGCWC	1 cut(s)	99
BsiHKCI	CYCGRG	2 cut(s)	293, 710
BsiSI	CCGG	4 cut(s)	88, 398, 421, 942
BslFI	GGGAC	1 cut(s)	165
BslI	CCNNNNNNNGG	3 cut(s)	583, 757, 822
BsmAI	GTCTC	1 cut(s)	238
BsmFI	GGGAC	1 cut(s)	165
BsmI	GAATGC	1 cut(s)	926
BsnI	GGCC	2 cut(s)	137, 783
Bso31I	GGTCTC	1 cut(s)	238
BsoBI	CYCGRG	2 cut(s)	293, 710
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	1 cut(s)	586
Bsp1720I	GCTNAGC	1 cut(s)	78
BspACI	CCGC	1 cut(s)	855
BspANI	GGCC	2 cut(s)	137, 783
BspCNI	CTCAG	5 cut(s)	91, 117, 334, 384, 426
BspLI	GGNNCC	2 cut(s)	359, 814
BspPI	GGATC	1 cut(s)	594
BspTNI	GGTCTC	1 cut(s)	238
BsrFI	RCCGGY	2 cut(s)	87, 420
BsrI	ACTGG	4 cut(s)	244, 512, 626, 808
BssAI	RCCGGY	2 cut(s)	87, 420
BssECI	CCNNGG	5 cut(s)	554, 678, 777, 816, 978
BssMI	GATC	1 cut(s)	586
BssT1I	CCWWGG	4 cut(s)	554, 777, 816, 978
Bst2UI	CCWGG	1 cut(s)	680
Bst4CI	ACNGT	1 cut(s)	992
Bst6I	CTCTTC	1 cut(s)	151
BstAPI	GCANNNNNTGC	1 cut(s)	923
BstDEI	CTNAG	5 cut(s)	78, 125, 321, 392, 434
BstEII	GGTNACC	1 cut(s)	830
BstENI	CCTNNNNNAGG	1 cut(s)	581
BstH2I	RGCGCY	2 cut(s)	165, 565
BstHHI	GCGC	2 cut(s)	164, 564
BstKTI	GATC	1 cut(s)	589
BstMAI	GTCTC	1 cut(s)	238
BstMBI	GATC	1 cut(s)	586
BstMWI	GCNNNNNNNGC	3 cut(s)	529, 780, 923
BstNI	CCWGG	1 cut(s)	680
BstNSI	RCATGY	1 cut(s)	67
BstPI	GGTNACC	1 cut(s)	830
BstSCI	CCNGG	1 cut(s)	678
BstSFI	CTRYAG	1 cut(s)	367
BstV1I	GCAGC	1 cut(s)	571
BstX2I	RGATCY	1 cut(s)	586
BstYI	RGATCY	1 cut(s)	586
Bsu36I	CCTNAGG	1 cut(s)	434
BsuI	GTATCC	2 cut(s)	300, 667
BsuRI	GGCC	2 cut(s)	137, 783
BtsI	GCAGTG	2 cut(s)	315, 751
BtsIMutI	CAGTG	3 cut(s)	75, 315, 751
CfoI	GCGC	2 cut(s)	164, 564
Cfr10I	RCCGGY	2 cut(s)	87, 420
Cfr13I	GGNCC	2 cut(s)	510, 781
Csp6I	GTAC	4 cut(s)	19, 343, 350, 505
CspAI	ACCGGT	1 cut(s)	87
CviAII	CATG	4 cut(s)	64, 362, 746, 822
CviQI	GTAC	4 cut(s)	19, 343, 350, 505
DdeI	CTNAG	5 cut(s)	78, 125, 321, 392, 434
DpnI	GATC	1 cut(s)	588
DpnII	GATC	1 cut(s)	586
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
EaeI	YGGCCR	1 cut(s)	135
Eam1104I	CTCTTC	1 cut(s)	151
EarI	CTCTTC	1 cut(s)	151
Eco130I	CCWWGG	4 cut(s)	554, 777, 816, 978
Eco31I	GGTCTC	1 cut(s)	238
Eco47I	GGWCC	1 cut(s)	510
Eco47III	AGCGCT	1 cut(s)	563
Eco81I	CCTNAGG	1 cut(s)	434
Eco88I	CYCGRG	2 cut(s)	293, 710
Eco91I	GGTNACC	1 cut(s)	830
EcoNI	CCTNNNNNAGG	1 cut(s)	581
EcoO65I	GGTNACC	1 cut(s)	830
EcoRII	CCWGG	1 cut(s)	678
EcoT14I	CCWWGG	4 cut(s)	554, 777, 816, 978
ErhI	CCWWGG	4 cut(s)	554, 777, 816, 978
FaeI	CATG	4 cut(s)	67, 365, 749, 825
FalI	AAGNNNNNCTT	2 cut(s)	148, 180
FaqI	GGGAC	1 cut(s)	165
FatI	CATG	4 cut(s)	63, 361, 745, 821
FauI	CCCGC	1 cut(s)	848
FblI	GTMKAC	1 cut(s)	690
Fnu4HI	GCNGC	1 cut(s)	560
Fsp4HI	GCNGC	1 cut(s)	560
FspBI	CTAG	2 cut(s)	555, 840
GlaI	GCGC	2 cut(s)	163, 563
GluI	GCNGC	1 cut(s)	560
HaeII	RGCGCY	2 cut(s)	165, 565
HaeIII	GGCC	2 cut(s)	137, 783
HapII	CCGG	4 cut(s)	88, 398, 421, 942
HhaI	GCGC	2 cut(s)	164, 564
Hin1II	CATG	4 cut(s)	67, 365, 749, 825
Hin6I	GCGC	2 cut(s)	162, 562
HinP1I	GCGC	2 cut(s)	162, 562
HincII	GTYRAC	1 cut(s)	451
HindII	GTYRAC	1 cut(s)	451
HinfI	GANTC	5 cut(s)	119, 296, 394, 697, 847
HpaII	CCGG	4 cut(s)	88, 398, 421, 942
HphI	GGTGA	2 cut(s)	77, 842
Hpy166II	GTNNAC	5 cut(s)	19, 277, 451, 499, 691
Hpy188I	TCNGA	6 cut(s)	143, 192, 206, 324, 408, 653
Hpy188III	TCNNGA	5 cut(s)	293, 580, 590, 710, 796
Hpy8I	GTNNAC	5 cut(s)	19, 277, 451, 499, 691
Hpy99I	CGWCG	4 cut(s)	26, 29, 107, 143
HpyAV	CCTTC	1 cut(s)	577
HpyCH4III	ACNGT	1 cut(s)	992
HpyCH4IV	ACGT	1 cut(s)	21
HpyCH4V	TGCA	9 cut(s)	4, 63, 464, 599, 617, 638, 917, 926, 955
HpyF10VI	GCNNNNNNNGC	3 cut(s)	529, 780, 923
HpyF3I	CTNAG	5 cut(s)	78, 125, 321, 392, 434
HpySE526I	ACGT	1 cut(s)	21
Hsp92II	CATG	4 cut(s)	67, 365, 749, 825
HspAI	GCGC	2 cut(s)	162, 562
Kzo9I	GATC	1 cut(s)	586
LmnI	GCTCC	1 cut(s)	818
Lsp1109I	GCAGC	1 cut(s)	571
LweI	GCATC	3 cut(s)	673, 904, 964
MaeI	CTAG	2 cut(s)	555, 840
MaeII	ACGT	1 cut(s)	21
MaeIII	GTNAC	1 cut(s)	830
MalI	GATC	1 cut(s)	588
MboI	GATC	1 cut(s)	586
MboII	GAAGA	7 cut(s)	168, 395, 421, 463, 466, 637, 692
MflI	RGATCY	1 cut(s)	586
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	7 cut(s)	212, 459, 607, 791, 900, 920, 973
MlyI	GAGTC	3 cut(s)	113, 305, 403
MmeI	TCCRAC	2 cut(s)	121, 537
MseI	TTAA	1 cut(s)	215
MslI	CAYNNNNRTG	1 cut(s)	68
MspA1I	CMGCKG	1 cut(s)	391
MspI	CCGG	4 cut(s)	88, 398, 421, 942
MspR9I	CCNGG	1 cut(s)	680
Mva1269I	GAATGC	1 cut(s)	926
MvaI	CCWGG	1 cut(s)	680
MwoI	GCNNNNNNNGC	3 cut(s)	529, 780, 923
NdeII	GATC	1 cut(s)	586
NlaIII	CATG	4 cut(s)	67, 365, 749, 825
NlaIV	GGNNCC	2 cut(s)	359, 814
NmuCI	GTSAC	1 cut(s)	830
NspI	RCATGY	1 cut(s)	67
PaeR7I	CTCGAG	1 cut(s)	710
PcsI	WCGNNNNNNNCGW	1 cut(s)	111
PctI	GAATGC	1 cut(s)	926
PfeI	GAWTC	2 cut(s)	697, 847
PflMI	CCANNNNNTGG	2 cut(s)	757, 822
PinAI	ACCGGT	1 cut(s)	87
PkrI	GCNGC	1 cut(s)	561
PleI	GAGTC	3 cut(s)	113, 304, 402
PpsI	GAGTC	3 cut(s)	113, 304, 402
Psp6I	CCWGG	1 cut(s)	678
PspEI	GGTNACC	1 cut(s)	830
PspGI	CCWGG	1 cut(s)	678
PspN4I	GGNNCC	2 cut(s)	359, 814
PspPI	GGNCC	2 cut(s)	510, 781
PsrI	GAACNNNNNNTAC	2 cut(s)	350, 382
PsuI	RGATCY	1 cut(s)	586
PvuII	CAGCTG	1 cut(s)	391
RsaI	GTAC	4 cut(s)	20, 344, 351, 506
RsaNI	GTAC	4 cut(s)	19, 343, 350, 505
RseI	CAYNNNNRTG	1 cut(s)	68
SaqAI	TTAA	1 cut(s)	215
SatI	GCNGC	1 cut(s)	560
Sau3AI	GATC	1 cut(s)	586
Sau96I	GGNCC	2 cut(s)	510, 781
ScaI	AGTACT	1 cut(s)	506
SchI	GAGTC	3 cut(s)	113, 305, 403
ScrFI	CCNGG	1 cut(s)	680
SduI	GDGCHC	1 cut(s)	99
SfaNI	GCATC	3 cut(s)	673, 904, 964
SfcI	CTRYAG	1 cut(s)	367
Sfr274I	CTCGAG	1 cut(s)	710
SinI	GGWCC	1 cut(s)	510
SlaI	CTCGAG	1 cut(s)	710
SmiMI	CAYNNNNRTG	1 cut(s)	68
SmlI	CTYRAG	1 cut(s)	710
SmoI	CTYRAG	1 cut(s)	710
Sse9I	AATT	7 cut(s)	212, 459, 607, 791, 900, 920, 973
SsiI	CCGC	1 cut(s)	855
SspMI	CTAG	2 cut(s)	555, 840
StyD4I	CCNGG	1 cut(s)	678
StyI	CCWWGG	4 cut(s)	554, 777, 816, 978
TaaI	ACNGT	1 cut(s)	992
TaiI	ACGT	1 cut(s)	24
TaqI	TCGA	3 cut(s)	480, 711, 904
TasI	AATT	7 cut(s)	212, 459, 607, 791, 900, 920, 973
TatI	WGTACW	2 cut(s)	349, 504
TfiI	GAWTC	2 cut(s)	697, 847
Tru1I	TTAA	1 cut(s)	215
Tru9I	TTAA	1 cut(s)	215
TscAI	CASTG	3 cut(s)	75, 322, 758
TseFI	GTSAC	1 cut(s)	830
TseI	GCWGC	1 cut(s)	559
Tsp45I	GTSAC	1 cut(s)	830
TspDTI	ATGAA	1 cut(s)	466
TspGWI	ACGGA	1 cut(s)	756
TspRI	CASTG	3 cut(s)	75, 322, 758
Van91I	CCANNNNNTGG	2 cut(s)	757, 822
VpaK11BI	GGWCC	1 cut(s)	510
XagI	CCTNNNNNAGG	1 cut(s)	581
XapI	RAATTY	3 cut(s)	607, 900, 920
XceI	RCATGY	1 cut(s)	67
XcmI	CCANNNNNNNNNTGG	1 cut(s)	493
XhoI	CTCGAG	1 cut(s)	710
XmaJI	CCTAGG	1 cut(s)	554
XmiI	GTMKAC	1 cut(s)	690
XspI	CTAG	2 cut(s)	555, 840
ZrmI	AGTACT	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.