RLG00000004286

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0016216
Physical Location & Seq
Forward (+)
57995753 .. 57996542
790 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000004286

Sequence Viewer

Length: 375 bp
ATGGGTTCATTTTTCAGCCACGGTTTCACCAAGGAACAGCTTGCAATGGCTCTCGAAAAGGTCAAGACCACCGTCAACGCCACCCCTGTCGTCGTCTTCAGTAAAACTTACTGTGGCTATTGCCGGAGGGTCAAGCAACTGTTGACACAGGTTGGAGCACGCTATAAGGTTGTCGAACTAGATGAGGAAGTTGATGGAGGTGAAATTCAAGCAGCTCTAACTGAGTGGACTGGACAGAGTTCTGTGCCTAATGTGTTCATTGCTGGGAAACACATCGGCGGCTGTGACTCTGTCTTAGAAAGGCACCAGTCAGGTCAGCTTCTGCCCCTTCTCCGGGAGGCTGGTGCAGTTGCTAATAACCCCGTGTCTGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

125

Amino Acids

13.38

Weight (kDa)

6.82

Isoelectric Point (pI)

38.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 30 - 92 2.7e-20 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63030
fragaria_vesca FvH4_5g05560
malus_domestica MD14G1176900.v1.1
prunus_persica Prupe.5G170800_v2.0.a1
pyrus_communis pycom14g14770
rosa_chinensis RchiOBHm_Chr7g0193211
rosa_laevigata RLG00000004286
rosa_multiflora Rmu_ssc0000092.1_g000022
rosa_roxburghii Rroxscaffold_3G00262280
rosa_rugosa Rorug07G0008300
rosa_samantha Rh7AG133800 Rh7BG134800 Rh7CG137700 Rh7DG135800
rosa_wichuraiana Rw7G011440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 303
AciI CCGC 1 cut(s) 279
AcsI RAATTY 1 cut(s) 204
AcuI CTGAAG 1 cut(s) 82
AfiI CCNNNNNNNGG 2 cut(s) 333, 334
AgsI TTSAA 1 cut(s) 209
AluBI AGCT 3 cut(s) 40, 215, 319
AluI AGCT 3 cut(s) 40, 215, 319
Alw21I GWGCWC 1 cut(s) 160
AlwNI CAGNNNCTG 1 cut(s) 322
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 204
AsuC2I CCSGG 1 cut(s) 335
AsuHPI GGTGA 2 cut(s) 19, 212
BanI GGYRCC 1 cut(s) 303
BbsI GAAGAC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 160
BbvI GCAGC 1 cut(s) 224
BccI CCATC 1 cut(s) 188
BcnI CCSGG 1 cut(s) 335
BfaI CTAG 1 cut(s) 179
BisI GCNGC 2 cut(s) 213, 280
BlsI GCNGC 2 cut(s) 214, 281
Bme1390I CCNGG 1 cut(s) 335
BmiI GGNNCC 1 cut(s) 305
BmrFI CCNGG 1 cut(s) 335
BoxI GACNNNNGTC 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 88
BpuMI CCSGG 1 cut(s) 335
BsaJI CCNNGG 2 cut(s) 19, 30
Bsc4I CCNNNNNNNGG 2 cut(s) 333, 334
Bse1I ACTGG 2 cut(s) 235, 307
Bse3DI GCAATG 2 cut(s) 51, 258
BseDI CCNNGG 2 cut(s) 19, 30
BseLI CCNNNNNNNGG 2 cut(s) 333, 334
BseMI GCAATG 2 cut(s) 51, 258
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 2 cut(s) 235, 307
BseXI GCAGC 1 cut(s) 224
BseYI CCCAGC 1 cut(s) 263
BsgI GTGCAG 1 cut(s) 366
BshNI GGYRCC 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 160
BsiSI CCGG 2 cut(s) 124, 334
BslI CCNNNNNNNGG 2 cut(s) 333, 334
Bsp1286I GDGCHC 1 cut(s) 160
BspACI CCGC 1 cut(s) 279
BspCNI CTCAG 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 303
BsrDI GCAATG 2 cut(s) 51, 258
BsrI ACTGG 2 cut(s) 235, 307
BssECI CCNNGG 2 cut(s) 19, 30
BssT1I CCWWGG 1 cut(s) 30
Bst4CI ACNGT 4 cut(s) 23, 73, 113, 141
BstC8I GCNNGC 2 cut(s) 42, 160
BstDEI CTNAG 2 cut(s) 222, 295
BstDSI CCRYGG 1 cut(s) 19
BstPAI GACNNNNGTC 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 333
BstV1I GCAGC 1 cut(s) 224
BstV2I GAAGAC 1 cut(s) 88
BtgI CCRYGG 1 cut(s) 19
Cac8I GCNNGC 2 cut(s) 42, 160
CaiI CAGNNNCTG 1 cut(s) 322
CviJI RGCY 8 cut(s) 18, 40, 50, 117, 215, 282, 319, 341
CviKI_1 RGCY 8 cut(s) 18, 40, 50, 117, 215, 282, 319, 341
DdeI CTNAG 2 cut(s) 222, 295
Eco130I CCWWGG 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 30
FaiI YATR 1 cut(s) 165
Fnu4HI GCNGC 2 cut(s) 213, 280
Fsp4HI GCNGC 2 cut(s) 213, 280
FspBI CTAG 1 cut(s) 179
GluI GCNGC 2 cut(s) 213, 280
GsaI CCCAGC 1 cut(s) 267
HapII CCGG 2 cut(s) 124, 334
HincII GTYRAC 2 cut(s) 76, 144
HindII GTYRAC 2 cut(s) 76, 144
HinfI GANTC 1 cut(s) 287
HpaII CCGG 2 cut(s) 124, 334
HphI GGTGA 2 cut(s) 19, 212
Hpy166II GTNNAC 3 cut(s) 76, 144, 228
Hpy188III TCNNGA 2 cut(s) 53, 64
Hpy8I GTNNAC 3 cut(s) 76, 144, 228
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 4 cut(s) 23, 73, 113, 141
HpyCH4V TGCA 2 cut(s) 44, 347
HpyF3I CTNAG 2 cut(s) 222, 295
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 9 cut(s) 99, 134, 137, 216, 249, 297, 320, 327, 347
Lsp1109I GCAGC 1 cut(s) 224
MaeI CTAG 1 cut(s) 179
MaeIII GTNAC 1 cut(s) 284
MboII GAAGA 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 1 cut(s) 204
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 4 cut(s) 120, 178, 191, 331
MspI CCGG 2 cut(s) 124, 334
MspR9I CCNGG 1 cut(s) 335
NciI CCSGG 1 cut(s) 335
NlaIV GGNNCC 1 cut(s) 305
NmuCI GTSAC 1 cut(s) 284
PflFI GACNNNGTC 1 cut(s) 290
PfoI TCCNGGA 1 cut(s) 333
PkrI GCNGC 2 cut(s) 214, 281
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
PshAI GACNNNNGTC 1 cut(s) 71
PspFI CCCAGC 1 cut(s) 263
PspN4I GGNNCC 1 cut(s) 305
PstNI CAGNNNCTG 1 cut(s) 322
PsyI GACNNNGTC 1 cut(s) 290
SatI GCNGC 2 cut(s) 213, 280
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 335
SduI GDGCHC 1 cut(s) 160
SetI ASST 8 cut(s) 42, 63, 153, 171, 202, 217, 316, 321
Sse9I AATT 1 cut(s) 204
SsiI CCGC 1 cut(s) 279
SspMI CTAG 1 cut(s) 179
StyD4I CCNGG 1 cut(s) 333
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 4 cut(s) 23, 73, 113, 141
TaqI TCGA 2 cut(s) 54, 174
TasI AATT 1 cut(s) 204
TauI GCSGC 1 cut(s) 282
TseFI GTSAC 1 cut(s) 284
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 1 cut(s) 247
Tth111I GACNNNGTC 1 cut(s) 290
XapI RAATTY 1 cut(s) 204
XspI CTAG 1 cut(s) 179
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.