FvH4_5g05560

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016216
Physical Location & Seq
Forward (+)
3267180 .. 3268684
1505 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g05560.t1

Sequence Viewer

Length: 375 bp
ATGGGTTCGTTTTTCAGCCACGGTTTCACTCCGGAACAGCTTGCAATGGCTCTCGATAAGGTCAAGACCACCGTGAACTCCACCCCTGTCGTCGTCTTCAGTAAAACCTACTGTGGTTATTGCAAGAGGGTTAAGCAACTATTGACACAGGTCGGAGCAACGTATAAGGTTATTGAACTAGATGAGGATGTTGATGGAGGTGAAATTCAAGCAGCTCTAGCTGAGTGGACTGGACAGACGACTGTGCCTAATGTGTTCATCGGGGGGAAACACATCGGCGGTTGCGACTCTGTCTTAGAGAAGCATCAGGCAGGTCAGCTTCTGCCTCTTCTCCGGGAGGCTGGTGCGGTTGTTAATAACCCCGTATCTGCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

125

Amino Acids

13.24

Weight (kDa)

5.85

Isoelectric Point (pI)

29.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 30 - 92 1.5e-22 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63030
fragaria_vesca FvH4_5g05560
malus_domestica MD14G1176900.v1.1
prunus_persica Prupe.5G170800_v2.0.a1
pyrus_communis pycom14g14770
rosa_chinensis RchiOBHm_Chr7g0193211
rosa_laevigata RLG00000004286
rosa_multiflora Rmu_ssc0000092.1_g000022
rosa_roxburghii Rroxscaffold_3G00262280
rosa_rugosa Rorug07G0008300
rosa_samantha Rh7AG133800 Rh7BG134800 Rh7CG137700 Rh7DG135800
rosa_wichuraiana Rw7G011440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 302
AccIII TCCGGA 1 cut(s) 31
AciI CCGC 2 cut(s) 279, 347
AcsI RAATTY 1 cut(s) 204
AcuI CTGAAG 1 cut(s) 82
AgsI TTSAA 2 cut(s) 176, 209
AluBI AGCT 4 cut(s) 40, 215, 221, 319
AluI AGCT 4 cut(s) 40, 215, 221, 319
AlwNI CAGNNNCTG 1 cut(s) 322
Aor13HI TCCGGA 1 cut(s) 31
ApeKI GCWGC 1 cut(s) 212
ApoI RAATTY 1 cut(s) 204
AsuC2I CCSGG 1 cut(s) 335
AsuHPI GGTGA 1 cut(s) 212
BbsI GAAGAC 1 cut(s) 88
BbvI GCAGC 1 cut(s) 224
BccI CCATC 1 cut(s) 188
BcnI CCSGG 1 cut(s) 335
BfaI CTAG 2 cut(s) 179, 218
BfuAI ACCTGC 1 cut(s) 302
BisI GCNGC 1 cut(s) 213
BlsI GCNGC 1 cut(s) 214
Bme1390I CCNGG 1 cut(s) 335
BmrFI CCNGG 1 cut(s) 335
BmsI GCATC 1 cut(s) 313
BoxI GACNNNNGTC 1 cut(s) 149
BpiI GAAGAC 1 cut(s) 88
BpuMI CCSGG 1 cut(s) 335
BsaJI CCNNGG 1 cut(s) 19
BsaWI WCCGGW 1 cut(s) 31
Bse1I ACTGG 1 cut(s) 235
Bse3DI GCAATG 1 cut(s) 51
BseAI TCCGGA 1 cut(s) 31
BseDI CCNNGG 1 cut(s) 19
BseGI GGATG 1 cut(s) 193
BseMI GCAATG 1 cut(s) 51
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 235
BseXI GCAGC 1 cut(s) 224
BsiSI CCGG 2 cut(s) 32, 334
Bsp13I TCCGGA 1 cut(s) 31
BspACI CCGC 2 cut(s) 279, 347
BspCNI CTCAG 1 cut(s) 214
BspEI TCCGGA 1 cut(s) 31
BspMI ACCTGC 1 cut(s) 302
BsrDI GCAATG 1 cut(s) 51
BsrI ACTGG 1 cut(s) 235
BssECI CCNNGG 1 cut(s) 19
Bst4CI ACNGT 4 cut(s) 23, 73, 113, 244
Bst6I CTCTTC 1 cut(s) 333
BstC8I GCNNGC 1 cut(s) 42
BstDEI CTNAG 2 cut(s) 222, 295
BstDSI CCRYGG 1 cut(s) 19
BstF5I GGATG 1 cut(s) 193
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstPAI GACNNNNGTC 1 cut(s) 149
BstSCI CCNGG 1 cut(s) 333
BstV1I GCAGC 1 cut(s) 224
BstV2I GAAGAC 1 cut(s) 88
BtgI CCRYGG 1 cut(s) 19
BtsCI GGATG 1 cut(s) 193
BveI ACCTGC 1 cut(s) 302
Cac8I GCNNGC 1 cut(s) 42
CaiI CAGNNNCTG 1 cut(s) 322
CviJI RGCY 7 cut(s) 18, 40, 50, 215, 221, 319, 341
CviKI_1 RGCY 7 cut(s) 18, 40, 50, 215, 221, 319, 341
DdeI CTNAG 2 cut(s) 222, 295
Eam1104I CTCTTC 1 cut(s) 333
EarI CTCTTC 1 cut(s) 333
Eco57I CTGAAG 1 cut(s) 82
FaiI YATR 1 cut(s) 165
Fnu4HI GCNGC 1 cut(s) 213
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 1 cut(s) 213
FspBI CTAG 2 cut(s) 179, 218
GluI GCNGC 1 cut(s) 213
HapII CCGG 2 cut(s) 32, 334
HinfI GANTC 1 cut(s) 287
HpaII CCGG 2 cut(s) 32, 334
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 2 cut(s) 76, 228
Hpy188I TCNGA 1 cut(s) 155
Hpy188III TCNNGA 3 cut(s) 32, 53, 64
Hpy8I GTNNAC 2 cut(s) 76, 228
Hpy99I CGWCG 1 cut(s) 95
HpyCH4III ACNGT 4 cut(s) 23, 73, 113, 244
HpyCH4IV ACGT 1 cut(s) 161
HpyCH4V TGCA 2 cut(s) 44, 123
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 2 cut(s) 222, 295
HpySE526I ACGT 1 cut(s) 161
Kpn2I TCCGGA 1 cut(s) 31
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 8 cut(s) 45, 99, 134, 216, 293, 297, 327, 347
Lsp1109I GCAGC 1 cut(s) 224
LweI GCATC 1 cut(s) 313
MaeI CTAG 2 cut(s) 179, 218
MaeII ACGT 1 cut(s) 161
MboII GAAGA 2 cut(s) 88, 320
MluCI AATT 1 cut(s) 204
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 5 cut(s) 120, 178, 191, 331, 336
MroI TCCGGA 1 cut(s) 31
MseI TTAA 2 cut(s) 132, 354
MspI CCGG 2 cut(s) 32, 334
MspR9I CCNGG 1 cut(s) 335
MwoI GCNNNNNNNGC 1 cut(s) 218
NciI CCSGG 1 cut(s) 335
PcsI WCGNNNNNNNCGW 1 cut(s) 282
PflFI GACNNNGTC 1 cut(s) 290
PfoI TCCNGGA 1 cut(s) 333
PkrI GCNGC 1 cut(s) 214
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
PshAI GACNNNNGTC 1 cut(s) 149
PstNI CAGNNNCTG 1 cut(s) 322
PsyI GACNNNGTC 1 cut(s) 290
SaqAI TTAA 2 cut(s) 132, 354
SatI GCNGC 1 cut(s) 213
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 335
SfaNI GCATC 1 cut(s) 313
Sse9I AATT 1 cut(s) 204
SsiI CCGC 2 cut(s) 279, 347
SspMI CTAG 2 cut(s) 179, 218
StyD4I CCNGG 1 cut(s) 333
TaaI ACNGT 4 cut(s) 23, 73, 113, 244
TaiI ACGT 1 cut(s) 164
TaqI TCGA 1 cut(s) 54
TasI AATT 1 cut(s) 204
Tru1I TTAA 2 cut(s) 132, 354
Tru9I TTAA 2 cut(s) 132, 354
TseI GCWGC 1 cut(s) 212
TspDTI ATGAA 1 cut(s) 247
Tth111I GACNNNGTC 1 cut(s) 290
XapI RAATTY 1 cut(s) 204
XspI CTAG 2 cut(s) 179, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.