MD14G1176900.v1.1

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr14
OG0016216
Physical Location & Seq
Reverse (-)
26975930 .. 26978428
2499 bp
Loading structure...
UTR
Exon/CDS
Intron
MD14G1176900.v1.1.491

Sequence Viewer

Length: 363 bp
ATGGGTTCACTGTTCACCAAGAGTATCAGCGAGGAACAGCTAGAAATGGCGCTCACCAAGGTCAAAAACATCGTCAACTCCAACCCAGTTGTGGTTTTCAGTAAAACTTACTGTGGTTATTGCAAGAGGGTGAAGCAGCTGCTCACTCAGCTTGGAGCAACTTTCAAGGTCATTGAATTGGATGAGGGAATTGATGGAGGTGAAATGCAAGCAGCTCTAGCGCAGTGGACTGGGCAAACGACTGTACCTAGCGTGTTTATCGGGGGAAAACATGTTGGTGGTTGTGACTCTGTTTTGGAGAAGCACAATGCAGGTCAGCTTGTGCCCCTTCTCACTGAAGCCGGTGCCCTTGCCTCCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

121

Amino Acids

12.77

Weight (kDa)

6.71

Isoelectric Point (pI)

34.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 30 - 92 7.4e-21 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63030
fragaria_vesca FvH4_5g05560
malus_domestica MD14G1176900.v1.1
prunus_persica Prupe.5G170800_v2.0.a1
pyrus_communis pycom14g14770
rosa_chinensis RchiOBHm_Chr7g0193211
rosa_laevigata RLG00000004286
rosa_multiflora Rmu_ssc0000092.1_g000022
rosa_roxburghii Rroxscaffold_3G00262280
rosa_rugosa Rorug07G0008300
rosa_samantha Rh7AG133800 Rh7BG134800 Rh7CG137700 Rh7DG135800
rosa_wichuraiana Rw7G011440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 302
AccB1I GGYRCC 1 cut(s) 344
AcuI CTGAAG 1 cut(s) 357
AfaI GTAC 1 cut(s) 246
AfiI CCNNNNNNNGG 1 cut(s) 91
AflIII ACRYGT 1 cut(s) 271
AgsI TTSAA 2 cut(s) 166, 176
AluBI AGCT 5 cut(s) 40, 139, 151, 215, 319
AluI AGCT 5 cut(s) 40, 139, 151, 215, 319
ApeKI GCWGC 3 cut(s) 136, 139, 212
ArsI GACNNNNNNTTYG 2 cut(s) 57, 89
AspLEI GCGC 2 cut(s) 52, 223
AsuHPI GGTGA 4 cut(s) 7, 46, 142, 212
BaeGI GKGCMC 2 cut(s) 327, 349
BaeI ACNNNNGTAYC 2 cut(s) 228, 261
BanI GGYRCC 1 cut(s) 344
BbvI GCAGC 3 cut(s) 126, 148, 224
BccI CCATC 1 cut(s) 188
BfaI CTAG 3 cut(s) 41, 218, 249
BfoI RGCGCY 1 cut(s) 53
BfuAI ACCTGC 1 cut(s) 302
BisI GCNGC 3 cut(s) 137, 140, 213
BlsI GCNGC 3 cut(s) 138, 141, 214
BmiI GGNNCC 1 cut(s) 346
BmrI ACTGGG 2 cut(s) 80, 240
BmuI ACTGGG 2 cut(s) 80, 240
BsaJI CCNNGG 1 cut(s) 57
Bsc4I CCNNNNNNNGG 1 cut(s) 91
Bse118I RCCGGY 1 cut(s) 341
Bse1I ACTGG 2 cut(s) 86, 235
BseDI CCNNGG 1 cut(s) 57
BseGI GGATG 1 cut(s) 187
BseLI CCNNNNNNNGG 1 cut(s) 91
BseMII CTCAG 1 cut(s) 161
BseNI ACTGG 2 cut(s) 86, 235
BseSI GKGCMC 2 cut(s) 327, 349
BseXI GCAGC 3 cut(s) 126, 148, 224
BshNI GGYRCC 1 cut(s) 344
BsiSI CCGG 1 cut(s) 342
BslI CCNNNNNNNGG 1 cut(s) 91
Bsp1286I GDGCHC 2 cut(s) 327, 349
BspCNI CTCAG 1 cut(s) 160
BspLI GGNNCC 1 cut(s) 346
BspMI ACCTGC 1 cut(s) 302
BspT107I GGYRCC 1 cut(s) 344
BsrFI RCCGGY 1 cut(s) 341
BsrI ACTGG 2 cut(s) 86, 235
BssAI RCCGGY 1 cut(s) 341
BssECI CCNNGG 1 cut(s) 57
BssT1I CCWWGG 1 cut(s) 57
Bst4CI ACNGT 3 cut(s) 12, 113, 244
BstC8I GCNNGC 1 cut(s) 210
BstDEI CTNAG 1 cut(s) 147
BstF5I GGATG 1 cut(s) 187
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 2 cut(s) 52, 223
BstMWI GCNNNNNNNGC 2 cut(s) 148, 218
BstNSI RCATGY 1 cut(s) 275
BstSLI GKGCMC 2 cut(s) 327, 349
BstV1I GCAGC 3 cut(s) 126, 148, 224
BtsCI GGATG 1 cut(s) 187
BtsI GCAGTG 1 cut(s) 230
BtsIMutI CAGTG 3 cut(s) 8, 230, 333
BveI ACCTGC 1 cut(s) 302
Cac8I GCNNGC 1 cut(s) 210
CfoI GCGC 2 cut(s) 52, 223
Cfr10I RCCGGY 1 cut(s) 341
Csp6I GTAC 1 cut(s) 245
CviAII CATG 1 cut(s) 272
CviJI RGCY 6 cut(s) 40, 139, 151, 215, 319, 341
CviKI_1 RGCY 6 cut(s) 40, 139, 151, 215, 319, 341
CviQI GTAC 1 cut(s) 245
DdeI CTNAG 1 cut(s) 147
Eco130I CCWWGG 1 cut(s) 57
Eco57I CTGAAG 1 cut(s) 357
EcoT14I CCWWGG 1 cut(s) 57
ErhI CCWWGG 1 cut(s) 57
FaeI CATG 1 cut(s) 275
FaiI YATR 1 cut(s) 273
FatI CATG 1 cut(s) 271
Fnu4HI GCNGC 3 cut(s) 137, 140, 213
FokI GGATG 1 cut(s) 194
Fsp4HI GCNGC 3 cut(s) 137, 140, 213
FspBI CTAG 3 cut(s) 41, 218, 249
GlaI GCGC 2 cut(s) 51, 222
GluI GCNGC 3 cut(s) 137, 140, 213
HaeII RGCGCY 1 cut(s) 53
HapII CCGG 1 cut(s) 342
HhaI GCGC 2 cut(s) 52, 223
Hin1II CATG 1 cut(s) 275
Hin6I GCGC 2 cut(s) 50, 221
HinP1I GCGC 2 cut(s) 50, 221
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 1 cut(s) 287
HpaII CCGG 1 cut(s) 342
HphI GGTGA 4 cut(s) 7, 46, 142, 212
Hpy166II GTNNAC 4 cut(s) 8, 15, 76, 228
Hpy8I GTNNAC 4 cut(s) 8, 15, 76, 228
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 3 cut(s) 12, 113, 244
HpyCH4V TGCA 3 cut(s) 123, 208, 311
HpyF10VI GCNNNNNNNGC 2 cut(s) 148, 218
HpyF3I CTNAG 1 cut(s) 147
Hsp92II CATG 1 cut(s) 275
HspAI GCGC 2 cut(s) 50, 221
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 4 cut(s) 99, 216, 297, 355
Lsp1109I GCAGC 3 cut(s) 126, 148, 224
MaeI CTAG 3 cut(s) 41, 218, 249
MaeIII GTNAC 1 cut(s) 284
MhlI GDGCHC 2 cut(s) 327, 349
MluCI AATT 2 cut(s) 176, 189
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 1 cut(s) 105
MnlI CCTC 4 cut(s) 25, 120, 178, 191
MslI CAYNNNNRTG 1 cut(s) 276
MspA1I CMGCKG 1 cut(s) 139
MspI CCGG 1 cut(s) 342
MwoI GCNNNNNNNGC 2 cut(s) 148, 218
NlaIII CATG 1 cut(s) 275
NlaIV GGNNCC 1 cut(s) 346
NmuCI GTSAC 1 cut(s) 284
NspI RCATGY 1 cut(s) 275
PciI ACATGT 1 cut(s) 271
PkrI GCNGC 3 cut(s) 138, 141, 214
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
PscI ACATGT 1 cut(s) 271
PspN4I GGNNCC 1 cut(s) 346
PvuII CAGCTG 1 cut(s) 139
RsaI GTAC 1 cut(s) 246
RsaNI GTAC 1 cut(s) 245
RseI CAYNNNNRTG 1 cut(s) 276
SatI GCNGC 3 cut(s) 137, 140, 213
SchI GAGTC 1 cut(s) 281
SduI GDGCHC 2 cut(s) 327, 349
SmiMI CAYNNNNRTG 1 cut(s) 276
Sse9I AATT 2 cut(s) 176, 189
SspMI CTAG 3 cut(s) 41, 218, 249
StyI CCWWGG 1 cut(s) 57
TaaI ACNGT 3 cut(s) 12, 113, 244
TasI AATT 2 cut(s) 176, 189
TscAI CASTG 3 cut(s) 15, 230, 340
TseFI GTSAC 1 cut(s) 284
TseI GCWGC 3 cut(s) 136, 139, 212
Tsp45I GTSAC 1 cut(s) 284
TspRI CASTG 3 cut(s) 15, 230, 340
XceI RCATGY 1 cut(s) 275
XcmI CCANNNNNNNNNTGG 1 cut(s) 88
XspI CTAG 3 cut(s) 41, 218, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.