Rroxscaffold_3G00262280

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0016216
Physical Location & Seq
Forward (+)
56311121 .. 56312447
1327 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00262280.1

Sequence Viewer

Length: 375 bp
ATGGGTTCATTTTTCAGCCACGGTTTCACCAAGGAACAGCTTGCAATGGCGCTCGAAAAGGTCAAGACCACCGTCAACTCCACCCCTGTCGTCGTCTTCAGTAAAACTTACTGTGGCTATTGCCGGAGGGTCAAGCAACTGCTGACACAGGTTGGAGCACGCTATAAGGTTGTCGAACTAGATGAGGAAGTTGATGGAGGTGAAATTCAATCAGCTCTAGCTGAGTGGACCGGACAGAGTTCTGTGCCTAATGTGTTCATTGCTGGGAAACACATCGGCGGCTGTGACTCTGTCTTAGAAAGGCACCAGACAGGTCAGCTTCTGCCCCTTCTCCGGGAGGCTGGTGCAGTTGCTAATAACCCCATGTCTGCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

124

Amino Acids

13.43

Weight (kDa)

6.82

Isoelectric Point (pI)

37.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 30 - 92 4.6e-20 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63030
fragaria_vesca FvH4_5g05560
malus_domestica MD14G1176900.v1.1
prunus_persica Prupe.5G170800_v2.0.a1
pyrus_communis pycom14g14770
rosa_chinensis RchiOBHm_Chr7g0193211
rosa_laevigata RLG00000004286
rosa_multiflora Rmu_ssc0000092.1_g000022
rosa_roxburghii Rroxscaffold_3G00262280
rosa_rugosa Rorug07G0008300
rosa_samantha Rh7AG133800 Rh7BG134800 Rh7CG137700 Rh7DG135800
rosa_wichuraiana Rw7G011440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 303
AciI CCGC 1 cut(s) 279
AcsI RAATTY 1 cut(s) 204
AcuI CTGAAG 1 cut(s) 82
AfiI CCNNNNNNNGG 2 cut(s) 333, 334
AgsI TTSAA 1 cut(s) 209
AluBI AGCT 4 cut(s) 40, 215, 221, 319
AluI AGCT 4 cut(s) 40, 215, 221, 319
Alw21I GWGCWC 1 cut(s) 160
AlwNI CAGNNNCTG 1 cut(s) 322
ApoI RAATTY 1 cut(s) 204
AspLEI GCGC 1 cut(s) 52
AspS9I GGNCC 1 cut(s) 228
AsuC2I CCSGG 1 cut(s) 335
AsuHPI GGTGA 2 cut(s) 19, 212
AvaII GGWCC 1 cut(s) 228
BanI GGYRCC 1 cut(s) 303
BbsI GAAGAC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 160
BccI CCATC 1 cut(s) 188
BcnI CCSGG 1 cut(s) 335
BfaI CTAG 2 cut(s) 179, 218
BfoI RGCGCY 1 cut(s) 53
BisI GCNGC 1 cut(s) 280
BlsI GCNGC 1 cut(s) 281
Bme1390I CCNGG 1 cut(s) 335
Bme18I GGWCC 1 cut(s) 228
BmgT120I GGNCC 1 cut(s) 228
BmiI GGNNCC 1 cut(s) 305
BmrFI CCNGG 1 cut(s) 335
BoxI GACNNNNGTC 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 88
BpuMI CCSGG 1 cut(s) 335
BsaJI CCNNGG 2 cut(s) 19, 30
BsaWI WCCGGW 1 cut(s) 230
Bsc4I CCNNNNNNNGG 2 cut(s) 333, 334
Bse3DI GCAATG 2 cut(s) 51, 258
BseDI CCNNGG 2 cut(s) 19, 30
BseLI CCNNNNNNNGG 2 cut(s) 333, 334
BseMI GCAATG 2 cut(s) 51, 258
BseMII CTCAG 1 cut(s) 213
BseYI CCCAGC 1 cut(s) 263
BsgI GTGCAG 1 cut(s) 366
BshNI GGYRCC 1 cut(s) 303
BsiHKAI GWGCWC 1 cut(s) 160
BsiSI CCGG 3 cut(s) 124, 231, 334
BslI CCNNNNNNNGG 2 cut(s) 333, 334
Bsp1286I GDGCHC 1 cut(s) 160
BspACI CCGC 1 cut(s) 279
BspCNI CTCAG 1 cut(s) 214
BspLI GGNNCC 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 303
BsrDI GCAATG 2 cut(s) 51, 258
BssECI CCNNGG 2 cut(s) 19, 30
BssT1I CCWWGG 1 cut(s) 30
Bst4CI ACNGT 3 cut(s) 23, 73, 113
BstC8I GCNNGC 2 cut(s) 42, 160
BstDEI CTNAG 2 cut(s) 222, 295
BstDSI CCRYGG 1 cut(s) 19
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 1 cut(s) 52
BstPAI GACNNNNGTC 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 333
BstV2I GAAGAC 1 cut(s) 88
BtgI CCRYGG 1 cut(s) 19
Cac8I GCNNGC 2 cut(s) 42, 160
CaiI CAGNNNCTG 1 cut(s) 322
CfoI GCGC 1 cut(s) 52
Cfr13I GGNCC 1 cut(s) 228
CviAII CATG 1 cut(s) 364
CviJI RGCY 8 cut(s) 18, 40, 117, 215, 221, 282, 319, 341
CviKI_1 RGCY 8 cut(s) 18, 40, 117, 215, 221, 282, 319, 341
DdeI CTNAG 2 cut(s) 222, 295
Eco130I CCWWGG 1 cut(s) 30
Eco47I GGWCC 1 cut(s) 228
Eco57I CTGAAG 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 1 cut(s) 367
FaiI YATR 2 cut(s) 165, 365
FatI CATG 1 cut(s) 363
Fnu4HI GCNGC 1 cut(s) 280
Fsp4HI GCNGC 1 cut(s) 280
FspBI CTAG 2 cut(s) 179, 218
GlaI GCGC 1 cut(s) 51
GluI GCNGC 1 cut(s) 280
GsaI CCCAGC 1 cut(s) 267
HaeII RGCGCY 1 cut(s) 53
HapII CCGG 3 cut(s) 124, 231, 334
HhaI GCGC 1 cut(s) 52
Hin1II CATG 1 cut(s) 367
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 1 cut(s) 287
HpaII CCGG 3 cut(s) 124, 231, 334
HphI GGTGA 2 cut(s) 19, 212
Hpy166II GTNNAC 2 cut(s) 76, 228
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 2 cut(s) 76, 228
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 3 cut(s) 23, 73, 113
HpyCH4V TGCA 2 cut(s) 44, 347
HpyF3I CTNAG 2 cut(s) 222, 295
Hsp92II CATG 1 cut(s) 367
HspAI GCGC 1 cut(s) 50
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 9 cut(s) 99, 134, 137, 244, 249, 297, 320, 327, 347
MaeI CTAG 2 cut(s) 179, 218
MaeIII GTNAC 1 cut(s) 284
MboII GAAGA 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 1 cut(s) 204
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 4 cut(s) 120, 178, 191, 331
MspI CCGG 3 cut(s) 124, 231, 334
MspR9I CCNGG 1 cut(s) 335
NciI CCSGG 1 cut(s) 335
NlaIII CATG 1 cut(s) 367
NlaIV GGNNCC 1 cut(s) 305
NmuCI GTSAC 1 cut(s) 284
PflFI GACNNNGTC 1 cut(s) 290
PfoI TCCNGGA 1 cut(s) 333
PkrI GCNGC 1 cut(s) 281
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
PshAI GACNNNNGTC 1 cut(s) 71
PspFI CCCAGC 1 cut(s) 263
PspN4I GGNNCC 1 cut(s) 305
PspPI GGNCC 1 cut(s) 228
PstNI CAGNNNCTG 1 cut(s) 322
PsyI GACNNNGTC 1 cut(s) 290
SatI GCNGC 1 cut(s) 280
Sau96I GGNCC 1 cut(s) 228
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 335
SduI GDGCHC 1 cut(s) 160
SetI ASST 9 cut(s) 42, 63, 153, 171, 202, 217, 223, 316, 321
SinI GGWCC 1 cut(s) 228
Sse9I AATT 1 cut(s) 204
SsiI CCGC 1 cut(s) 279
SspMI CTAG 2 cut(s) 179, 218
StyD4I CCNGG 1 cut(s) 333
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 3 cut(s) 23, 73, 113
TaqI TCGA 2 cut(s) 54, 174
TasI AATT 1 cut(s) 204
TauI GCSGC 1 cut(s) 282
TseFI GTSAC 1 cut(s) 284
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 1 cut(s) 247
Tth111I GACNNNGTC 1 cut(s) 290
VpaK11BI GGWCC 1 cut(s) 228
XapI RAATTY 1 cut(s) 204
XspI CTAG 2 cut(s) 179, 218
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.