AT5G63030

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0016216
Physical Location & Seq
Forward (+)
25286177 .. 25287694
1518 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G63030.1

Sequence Viewer

Length: 378 bp
ATGGGTTCAATGTTCAGTGGAAACCGAATGAGCAAGGAAGAGATGGAGGTGGTGGTGAACAAGGCTAAAGAGATCGTCTCTGCTTATCCCGTTGTTGTCTTCAGCAAGACATACTGTGGTTATTGCCAGAGGGTGAAGCAGTTACTGACGCAGCTAGGAGCAACTTTTAAAGTACTTGAGCTCGATGAAATGAGTGATGGAGGTGAGATCCAATCAGCTTTATCAGAGTGGACTGGACAGACCACAGTTCCAAACGTCTTCATCAAAGGAAACCACATCGGTGGATGCGATAGAGTGATGGAGACCAACAAGCAAGGCAAGCTTGTGCCTCTACTTACTGAAGCTGGGGCTATTGCAGATAACTCTTCTCAACTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

125

Amino Acids

13.61

Weight (kDa)

5.39

Isoelectric Point (pI)

37.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Glutaredoxin PF00462 31 - 93 4e-21 Glutaredoxin
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63030
fragaria_vesca FvH4_5g05560
malus_domestica MD14G1176900.v1.1
prunus_persica Prupe.5G170800_v2.0.a1
pyrus_communis pycom14g14770
rosa_chinensis RchiOBHm_Chr7g0193211
rosa_laevigata RLG00000004286
rosa_multiflora Rmu_ssc0000092.1_g000022
rosa_roxburghii Rroxscaffold_3G00262280
rosa_rugosa Rorug07G0008300
rosa_samantha Rh7AG133800 Rh7BG134800 Rh7CG137700 Rh7DG135800
rosa_wichuraiana Rw7G011440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 202
AcuI CTGAAG 2 cut(s) 85, 360
AfaI GTAC 1 cut(s) 174
AgsI TTSAA 1 cut(s) 9
AleI CACNNNNGTG 1 cut(s) 279
AluBI AGCT 5 cut(s) 154, 181, 218, 322, 344
AluI AGCT 5 cut(s) 154, 181, 218, 322, 344
Alw21I GWGCWC 1 cut(s) 183
Alw26I GTCTC 2 cut(s) 82, 296
AlwI GGATC 1 cut(s) 202
AlwNI CAGNNNCTG 1 cut(s) 145
ApeKI GCWGC 1 cut(s) 151
AsuHPI GGTGA 3 cut(s) 67, 145, 215
BanII GRGCYC 1 cut(s) 183
BbsI GAAGAC 2 cut(s) 91, 250
Bbv12I GWGCWC 1 cut(s) 183
BbvI GCAGC 1 cut(s) 163
BccI CCATC 3 cut(s) 37, 191, 292
BcoDI GTCTC 2 cut(s) 82, 296
BfaI CTAG 1 cut(s) 155
BisI GCNGC 1 cut(s) 152
BlsI GCNGC 1 cut(s) 153
BmcAI AGTACT 1 cut(s) 174
BmsI GCATC 1 cut(s) 275
BpiI GAAGAC 2 cut(s) 91, 250
BplI GAGNNNNNCTC 2 cut(s) 62, 94
BpuEI CTTGAG 1 cut(s) 197
BsaI GGTCTC 1 cut(s) 296
Bse1I ACTGG 1 cut(s) 238
BseGI GGATG 1 cut(s) 290
BseNI ACTGG 1 cut(s) 238
BseXI GCAGC 1 cut(s) 163
BseYI CCCAGC 1 cut(s) 344
BsiHKAI GWGCWC 1 cut(s) 183
BsmAI GTCTC 2 cut(s) 82, 296
BsmBI CGTCTC 1 cut(s) 82
Bso31I GGTCTC 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 183
Bsp143I GATC 2 cut(s) 72, 207
BspPI GGATC 1 cut(s) 202
BspTNI GGTCTC 1 cut(s) 296
BsrI ACTGG 1 cut(s) 238
BssMI GATC 2 cut(s) 72, 207
Bst4CI ACNGT 2 cut(s) 116, 247
Bst6I CTCTTC 2 cut(s) 33, 370
BstC8I GCNNGC 1 cut(s) 320
BstF5I GGATG 1 cut(s) 290
BstKTI GATC 2 cut(s) 75, 210
BstMAI GTCTC 2 cut(s) 82, 296
BstMBI GATC 2 cut(s) 72, 207
BstMWI GCNNNNNNNGC 1 cut(s) 319
BstV1I GCAGC 1 cut(s) 163
BstV2I GAAGAC 2 cut(s) 91, 250
BstX2I RGATCY 1 cut(s) 207
BstXI CCANNNNNNTGG 1 cut(s) 281
BstYI RGATCY 1 cut(s) 207
BtsCI GGATG 1 cut(s) 290
BtsIMutI CAGTG 1 cut(s) 22
Cac8I GCNNGC 1 cut(s) 320
CaiI CAGNNNCTG 1 cut(s) 145
CseI GACGC 1 cut(s) 157
Csp6I GTAC 1 cut(s) 173
CviJI RGCY 7 cut(s) 65, 154, 181, 218, 322, 344, 350
CviKI_1 RGCY 7 cut(s) 65, 154, 181, 218, 322, 344, 350
CviQI GTAC 1 cut(s) 173
DpnI GATC 2 cut(s) 74, 209
DpnII GATC 2 cut(s) 72, 207
DraI TTTAAA 1 cut(s) 169
Eam1104I CTCTTC 2 cut(s) 33, 370
EarI CTCTTC 2 cut(s) 33, 370
Ecl136II GAGCTC 1 cut(s) 181
Eco24I GRGCYC 1 cut(s) 183
Eco31I GGTCTC 1 cut(s) 296
Eco53kI GAGCTC 1 cut(s) 181
Eco57I CTGAAG 2 cut(s) 85, 360
EcoICRI GAGCTC 1 cut(s) 181
EcoT38I GRGCYC 1 cut(s) 183
Esp3I CGTCTC 1 cut(s) 82
FaiI YATR 1 cut(s) 112
FalI AAGNNNNNCTT 2 cut(s) 306, 338
Fnu4HI GCNGC 1 cut(s) 152
FokI GGATG 1 cut(s) 297
FriOI GRGCYC 1 cut(s) 183
Fsp4HI GCNGC 1 cut(s) 152
FspBI CTAG 1 cut(s) 155
GluI GCNGC 1 cut(s) 152
GsaI CCCAGC 1 cut(s) 348
HgaI GACGC 1 cut(s) 157
HindIII AAGCTT 1 cut(s) 320
HphI GGTGA 3 cut(s) 67, 145, 215
Hpy166II GTNNAC 2 cut(s) 58, 231
Hpy188I TCNGA 1 cut(s) 226
Hpy8I GTNNAC 2 cut(s) 58, 231
HpyCH4III ACNGT 2 cut(s) 116, 247
HpyCH4IV ACGT 1 cut(s) 255
HpyCH4V TGCA 1 cut(s) 356
HpyF10VI GCNNNNNNNGC 1 cut(s) 319
HpySE526I ACGT 1 cut(s) 255
Kzo9I GATC 2 cut(s) 72, 207
LmnI GCTCC 1 cut(s) 158
LpnPI CCDG 3 cut(s) 140, 219, 330
Lsp1109I GCAGC 1 cut(s) 163
LweI GCATC 1 cut(s) 275
MaeI CTAG 1 cut(s) 155
MaeII ACGT 1 cut(s) 255
MaeIII GTNAC 1 cut(s) 141
MalI GATC 2 cut(s) 74, 209
MboI GATC 2 cut(s) 72, 207
MboII GAAGA 4 cut(s) 50, 91, 250, 357
MflI RGATCY 1 cut(s) 207
MhlI GDGCHC 1 cut(s) 183
MnlI CCTC 4 cut(s) 40, 123, 194, 339
MseI TTAA 1 cut(s) 168
MslI CAYNNNNRTG 1 cut(s) 279
MwoI GCNNNNNNNGC 1 cut(s) 319
NdeII GATC 2 cut(s) 72, 207
OliI CACNNNNGTG 1 cut(s) 279
PcsI WCGNNNNNNNCGW 1 cut(s) 285
PkrI GCNGC 1 cut(s) 153
Psp124BI GAGCTC 1 cut(s) 183
PspFI CCCAGC 1 cut(s) 344
PstNI CAGNNNCTG 1 cut(s) 145
PsuI RGATCY 1 cut(s) 207
RsaI GTAC 1 cut(s) 174
RsaNI GTAC 1 cut(s) 173
RseI CAYNNNNRTG 1 cut(s) 279
SacI GAGCTC 1 cut(s) 183
SaqAI TTAA 1 cut(s) 168
SatI GCNGC 1 cut(s) 152
Sau3AI GATC 2 cut(s) 72, 207
ScaI AGTACT 1 cut(s) 174
SduI GDGCHC 1 cut(s) 183
SetI ASST 8 cut(s) 51, 156, 183, 205, 220, 258, 324, 346
SfaNI GCATC 1 cut(s) 275
SmiMI CAYNNNNRTG 1 cut(s) 279
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
SspMI CTAG 1 cut(s) 155
SstI GAGCTC 1 cut(s) 183
TaaI ACNGT 2 cut(s) 116, 247
TaiI ACGT 1 cut(s) 258
TaqI TCGA 1 cut(s) 183
TatI WGTACW 1 cut(s) 172
Tru1I TTAA 1 cut(s) 168
Tru9I TTAA 1 cut(s) 168
TscAI CASTG 1 cut(s) 22
TseI GCWGC 1 cut(s) 151
TspDTI ATGAA 2 cut(s) 201, 250
TspRI CASTG 1 cut(s) 22
XspI CTAG 1 cut(s) 155
ZrmI AGTACT 1 cut(s) 174
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.