Rmu_ssc0000092.1_g000022

Glutaredoxin

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000092.1
OG0016216
Physical Location & Seq
Forward (+)
115536 .. 116336
801 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000092.1_g000022.1.cds

Sequence Viewer

Length: 375 bp
atgggttcatttttcagccacggtttcaccaaggaacagcttgcaatggcgctcgaaaagatcaagaccaccgtcaacgccacccctgtcgtcgtcttcagtaaaacttactgtggctattgccggagggtcaagcaactgttgacacaggttggagcacgctataaggttgtcgaactagatgaggatgttgatggaggtgaaattgaagcagctctagctgagtggactggacagagtactgtgcctaatgtgttcattgctgggaaacacatcggcggctgtgactctgtcttagaaaagcaccagacaggtcagcttctgccccttctccgggaggctggtgcagttgcaaataaccccatgtctgcgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Glutaredoxin

Protein Analysis

124

Amino Acids

13.39

Weight (kDa)

6.28

Isoelectric Point (pI)

32.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016216)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G63030
fragaria_vesca FvH4_5g05560
malus_domestica MD14G1176900.v1.1
prunus_persica Prupe.5G170800_v2.0.a1
pyrus_communis pycom14g14770
rosa_chinensis RchiOBHm_Chr7g0193211
rosa_laevigata RLG00000004286
rosa_multiflora Rmu_ssc0000092.1_g000022
rosa_roxburghii Rroxscaffold_3G00262280
rosa_rugosa Rorug07G0008300
rosa_samantha Rh7AG133800 Rh7BG134800 Rh7CG137700 Rh7DG135800
rosa_wichuraiana Rw7G011440

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 279
AcuI CTGAAG 1 cut(s) 82
AfaI GTAC 1 cut(s) 241
AfiI CCNNNNNNNGG 2 cut(s) 333, 334
AgsI TTSAA 1 cut(s) 209
AluBI AGCT 4 cut(s) 40, 215, 221, 319
AluI AGCT 4 cut(s) 40, 215, 221, 319
Alw21I GWGCWC 1 cut(s) 160
AlwNI CAGNNNCTG 1 cut(s) 322
ApeKI GCWGC 1 cut(s) 212
AspLEI GCGC 1 cut(s) 52
AsuC2I CCSGG 1 cut(s) 335
AsuHPI GGTGA 2 cut(s) 19, 212
BbsI GAAGAC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 160
BbvI GCAGC 1 cut(s) 224
BccI CCATC 1 cut(s) 188
BcnI CCSGG 1 cut(s) 335
BfaI CTAG 2 cut(s) 179, 218
BfoI RGCGCY 1 cut(s) 53
BisI GCNGC 2 cut(s) 213, 280
BlsI GCNGC 2 cut(s) 214, 281
BmcAI AGTACT 1 cut(s) 241
Bme1390I CCNGG 1 cut(s) 335
BmrFI CCNGG 1 cut(s) 335
BoxI GACNNNNGTC 1 cut(s) 71
BpiI GAAGAC 1 cut(s) 88
BpuMI CCSGG 1 cut(s) 335
BsaJI CCNNGG 2 cut(s) 19, 30
Bsc4I CCNNNNNNNGG 2 cut(s) 333, 334
Bse1I ACTGG 1 cut(s) 235
Bse3DI GCAATG 2 cut(s) 51, 258
BseDI CCNNGG 2 cut(s) 19, 30
BseGI GGATG 1 cut(s) 193
BseLI CCNNNNNNNGG 2 cut(s) 333, 334
BseMI GCAATG 2 cut(s) 51, 258
BseMII CTCAG 1 cut(s) 213
BseNI ACTGG 1 cut(s) 235
BseXI GCAGC 1 cut(s) 224
BseYI CCCAGC 1 cut(s) 263
BsgI GTGCAG 1 cut(s) 366
BsiHKAI GWGCWC 1 cut(s) 160
BsiSI CCGG 2 cut(s) 124, 334
BslI CCNNNNNNNGG 2 cut(s) 333, 334
Bsp1286I GDGCHC 1 cut(s) 160
Bsp143I GATC 1 cut(s) 60
BspACI CCGC 1 cut(s) 279
BspCNI CTCAG 1 cut(s) 214
BsrDI GCAATG 2 cut(s) 51, 258
BsrI ACTGG 1 cut(s) 235
BssECI CCNNGG 2 cut(s) 19, 30
BssMI GATC 1 cut(s) 60
BssT1I CCWWGG 1 cut(s) 30
Bst4CI ACNGT 5 cut(s) 23, 73, 113, 141, 244
BstC8I GCNNGC 2 cut(s) 42, 160
BstDEI CTNAG 2 cut(s) 222, 295
BstDSI CCRYGG 1 cut(s) 19
BstF5I GGATG 1 cut(s) 193
BstH2I RGCGCY 1 cut(s) 53
BstHHI GCGC 1 cut(s) 52
BstKTI GATC 1 cut(s) 63
BstMBI GATC 1 cut(s) 60
BstMWI GCNNNNNNNGC 1 cut(s) 218
BstPAI GACNNNNGTC 1 cut(s) 71
BstSCI CCNGG 1 cut(s) 333
BstV1I GCAGC 1 cut(s) 224
BstV2I GAAGAC 1 cut(s) 88
BtgI CCRYGG 1 cut(s) 19
BtsCI GGATG 1 cut(s) 193
Cac8I GCNNGC 2 cut(s) 42, 160
CaiI CAGNNNCTG 1 cut(s) 322
CfoI GCGC 1 cut(s) 52
Csp6I GTAC 1 cut(s) 240
CviAII CATG 1 cut(s) 364
CviJI RGCY 8 cut(s) 18, 40, 117, 215, 221, 282, 319, 341
CviKI_1 RGCY 8 cut(s) 18, 40, 117, 215, 221, 282, 319, 341
CviQI GTAC 1 cut(s) 240
DdeI CTNAG 2 cut(s) 222, 295
DpnI GATC 1 cut(s) 62
DpnII GATC 1 cut(s) 60
Eco130I CCWWGG 1 cut(s) 30
Eco57I CTGAAG 1 cut(s) 82
EcoT14I CCWWGG 1 cut(s) 30
ErhI CCWWGG 1 cut(s) 30
FaeI CATG 1 cut(s) 367
FaiI YATR 2 cut(s) 165, 365
FatI CATG 1 cut(s) 363
Fnu4HI GCNGC 2 cut(s) 213, 280
FokI GGATG 1 cut(s) 200
Fsp4HI GCNGC 2 cut(s) 213, 280
FspBI CTAG 2 cut(s) 179, 218
GlaI GCGC 1 cut(s) 51
GluI GCNGC 2 cut(s) 213, 280
GsaI CCCAGC 1 cut(s) 267
HaeII RGCGCY 1 cut(s) 53
HapII CCGG 2 cut(s) 124, 334
HhaI GCGC 1 cut(s) 52
Hin1II CATG 1 cut(s) 367
Hin6I GCGC 1 cut(s) 50
HinP1I GCGC 1 cut(s) 50
HincII GTYRAC 2 cut(s) 76, 144
HindII GTYRAC 2 cut(s) 76, 144
HinfI GANTC 1 cut(s) 287
HpaII CCGG 2 cut(s) 124, 334
HphI GGTGA 2 cut(s) 19, 212
Hpy166II GTNNAC 3 cut(s) 76, 144, 228
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 3 cut(s) 76, 144, 228
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 338
HpyCH4III ACNGT 5 cut(s) 23, 73, 113, 141, 244
HpyCH4V TGCA 3 cut(s) 44, 347, 353
HpyF10VI GCNNNNNNNGC 1 cut(s) 218
HpyF3I CTNAG 2 cut(s) 222, 295
Hsp92II CATG 1 cut(s) 367
HspAI GCGC 1 cut(s) 50
Kzo9I GATC 1 cut(s) 60
LmnI GCTCC 1 cut(s) 155
LpnPI CCDG 9 cut(s) 99, 134, 137, 216, 249, 297, 320, 327, 347
Lsp1109I GCAGC 1 cut(s) 224
MaeI CTAG 2 cut(s) 179, 218
MaeIII GTNAC 1 cut(s) 284
MalI GATC 1 cut(s) 62
MboI GATC 1 cut(s) 60
MboII GAAGA 1 cut(s) 88
MhlI GDGCHC 1 cut(s) 160
MluCI AATT 1 cut(s) 204
MlyI GAGTC 1 cut(s) 281
MmeI TCCRAC 1 cut(s) 133
MnlI CCTC 4 cut(s) 120, 178, 191, 331
MspI CCGG 2 cut(s) 124, 334
MspR9I CCNGG 1 cut(s) 335
MwoI GCNNNNNNNGC 1 cut(s) 218
NciI CCSGG 1 cut(s) 335
NdeII GATC 1 cut(s) 60
NlaIII CATG 1 cut(s) 367
NmuCI GTSAC 1 cut(s) 284
PflFI GACNNNGTC 1 cut(s) 290
PfoI TCCNGGA 1 cut(s) 333
PkrI GCNGC 2 cut(s) 214, 281
PleI GAGTC 1 cut(s) 281
PpsI GAGTC 1 cut(s) 281
PshAI GACNNNNGTC 1 cut(s) 71
PspFI CCCAGC 1 cut(s) 263
PstNI CAGNNNCTG 1 cut(s) 322
PsyI GACNNNGTC 1 cut(s) 290
RsaI GTAC 1 cut(s) 241
RsaNI GTAC 1 cut(s) 240
SatI GCNGC 2 cut(s) 213, 280
Sau3AI GATC 1 cut(s) 60
ScaI AGTACT 1 cut(s) 241
SchI GAGTC 1 cut(s) 281
ScrFI CCNGG 1 cut(s) 335
SduI GDGCHC 1 cut(s) 160
SetI ASST 8 cut(s) 42, 153, 171, 202, 217, 223, 316, 321
Sse9I AATT 1 cut(s) 204
SsiI CCGC 1 cut(s) 279
SspMI CTAG 2 cut(s) 179, 218
StyD4I CCNGG 1 cut(s) 333
StyI CCWWGG 1 cut(s) 30
TaaI ACNGT 5 cut(s) 23, 73, 113, 141, 244
TaqI TCGA 2 cut(s) 54, 174
TasI AATT 1 cut(s) 204
TatI WGTACW 1 cut(s) 239
TauI GCSGC 1 cut(s) 282
TseFI GTSAC 1 cut(s) 284
TseI GCWGC 1 cut(s) 212
Tsp45I GTSAC 1 cut(s) 284
TspDTI ATGAA 1 cut(s) 247
Tth111I GACNNNGTC 1 cut(s) 290
XspI CTAG 2 cut(s) 179, 218
ZrmI AGTACT 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.