Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr06

Orthogroup ID

OG0020359

Physical Location & Seq

Genomic Coordinates Reverse (-)

35328116 .. 35328340

Gene Structure 225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD06G1221700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 225 bp

ATGAAATTTTTTCTATTATTGTACAGTATGAGAGAGCCACAGCCAGATTACTCAGCTTATAGAGAGGCCAGTTTTGGTCATGCCATATTCGACATCAAGAACCGAACCCATGCCTACTATAGCTGGCACAGGAACGATGATGGAGCTGCAGTAAAAGCAGACTCTATGTGGTTTTTCAACAGATACCATCATCCCGTTGATGATTCCACAAGTCCCCAATGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003993 GO:0005488 GO:0005506 GO:0005575 GO:0005576 GO:0005615 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005911 GO:0006793 GO:0006796 GO:0006950 GO:0007154 GO:0008150 GO:0008152 GO:0008199 GO:0008270 GO:0009267 GO:0009505 GO:0009506 GO:0009605 GO:0009987 GO:0009991 GO:0016036 GO:0016311 GO:0016787 GO:0016788 GO:0016791 GO:0030054 GO:0030145 GO:0030312 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0042578 GO:0042594 GO:0043167 GO:0043169 GO:0044237 GO:0044421 GO:0044424 GO:0044444 GO:0044464 GO:0046872 GO:0046914 GO:0050896 GO:0051716 GO:0055044 GO:0071496 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Metallophos Metallophos_C Pur_ac_phosph_N

Protein Analysis

75

Amino Acids

8.84

Weight (kDa)

6.48

Isoelectric Point (pI)

31.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Metallophos_C	PF14008	11 - 49	2.2e-12	Iron/zinc purple acid phosphatase-like protein C

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020359)

Species	Orthologous Gene IDs
malus_domestica	MD06G1221700.v1.1 MD15G1020400.v1.1
rosa_chinensis	RchiOBHm_Chr6g0266601
rosa_laevigata	RLG00000014101
rosa_multiflora	Rmu_sc0002769.1_g000001
rosa_roxburghii	Rroxscaffold_7G00201730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	5
AfaI	GTAC	1 cut(s)	23
AgsI	TTSAA	1 cut(s)	178
AluBI	AGCT	3 cut(s)	56, 123, 146
AluI	AGCT	3 cut(s)	56, 123, 146
AoxI	GGCC	1 cut(s)	66
ApeKI	GCWGC	1 cut(s)	146
ApoI	RAATTY	1 cut(s)	5
BbvI	GCAGC	1 cut(s)	133
BccI	CCATC	2 cut(s)	134, 195
BfmI	CTRYAG	2 cut(s)	118, 147
BisI	GCNGC	1 cut(s)	147
BlsI	GCNGC	1 cut(s)	148
BsaXI	ACNNNNNCTCC	2 cut(s)	135, 165
Bse1I	ACTGG	1 cut(s)	69
BseGI	GGATG	1 cut(s)	190
BseMII	CTCAG	1 cut(s)	66
BseNI	ACTGG	1 cut(s)	69
BseXI	GCAGC	1 cut(s)	133
BshFI	GGCC	1 cut(s)	68
BslFI	GGGAC	1 cut(s)	198
BsmFI	GGGAC	1 cut(s)	198
BsnI	GGCC	1 cut(s)	68
Bsp1407I	TGTACA	1 cut(s)	21
BspANI	GGCC	1 cut(s)	68
BspCNI	CTCAG	1 cut(s)	65
BspMAI	CTGCAG	1 cut(s)	151
BsrGI	TGTACA	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	69
Bst4CI	ACNGT	1 cut(s)	26
BstAUI	TGTACA	1 cut(s)	21
BstC8I	GCNNGC	1 cut(s)	125
BstDEI	CTNAG	1 cut(s)	52
BstF5I	GGATG	1 cut(s)	190
BstMWI	GCNNNNNNNGC	1 cut(s)	155
BstSFI	CTRYAG	2 cut(s)	118, 147
BstV1I	GCAGC	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	68
BtsCI	GGATG	1 cut(s)	190
Cac8I	GCNNGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	22
CviAII	CATG	2 cut(s)	80, 110
CviJI	RGCY	6 cut(s)	37, 43, 56, 68, 123, 146
CviKI_1	RGCY	6 cut(s)	37, 43, 56, 68, 123, 146
CviQI	GTAC	1 cut(s)	22
DdeI	CTNAG	1 cut(s)	52
FaeI	CATG	2 cut(s)	83, 113
FaiI	YATR	7 cut(s)	29, 60, 81, 86, 111, 120, 167
FaqI	GGGAC	1 cut(s)	198
FatI	CATG	2 cut(s)	79, 109
Fnu4HI	GCNGC	1 cut(s)	147
FokI	GGATG	1 cut(s)	177
Fsp4HI	GCNGC	1 cut(s)	147
GluI	GCNGC	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	68
Hin1II	CATG	2 cut(s)	83, 113
HinfI	GANTC	2 cut(s)	161, 203
Hpy188III	TCNNGA	1 cut(s)	97
HpyCH4III	ACNGT	1 cut(s)	26
HpyCH4V	TGCA	1 cut(s)	149
HpyF10VI	GCNNNNNNNGC	1 cut(s)	155
HpyF3I	CTNAG	1 cut(s)	52
Hsp92II	CATG	2 cut(s)	83, 113
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	4 cut(s)	57, 82, 109, 115
Lsp1109I	GCAGC	1 cut(s)	133
MluCI	AATT	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	155
MnlI	CCTC	1 cut(s)	58
MwoI	GCNNNNNNNGC	1 cut(s)	155
NlaIII	CATG	2 cut(s)	83, 113
PfeI	GAWTC	1 cut(s)	203
PkrI	GCNGC	1 cut(s)	148
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
PstI	CTGCAG	1 cut(s)	151
RsaI	GTAC	1 cut(s)	23
RsaNI	GTAC	1 cut(s)	22
SatI	GCNGC	1 cut(s)	147
SchI	GAGTC	1 cut(s)	155
SetI	ASST	3 cut(s)	58, 125, 148
SfcI	CTRYAG	2 cut(s)	118, 147
SgeI	CNNG	8 cut(s)	56, 81, 92, 109, 122, 136, 142, 206
Sse9I	AATT	1 cut(s)	5
TaaI	ACNGT	1 cut(s)	26
TaqI	TCGA	1 cut(s)	90
TasI	AATT	1 cut(s)	5
TatI	WGTACW	1 cut(s)	21
TfiI	GAWTC	1 cut(s)	203
TseI	GCWGC	1 cut(s)	146
TspDTI	ATGAA	1 cut(s)	17
XapI	RAATTY	1 cut(s)	5

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.