MD15G1020400.v1.1

Purple acid phosphatase

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
Physical Location & Seq
Forward (+)
1188482 .. 1189194
713 bp
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UTR
Exon/CDS
Intron
MD15G1020400.v1.1.491

Sequence Viewer

Length: 222 bp
ATGTGGCAATCGGAGAGGAGCAGAATTCCAAATGACAGAACCACAGCCAAGTTCCAGGAAGCTAGCTTCGGTCATGGGATTTTCGATACAAAGAACGGAACTCATGCATTTTTCAGTTGGCATCAGAATCAAGACGGGTATGCCGTTGAAGCTGATTCTCTGTGGTTGAAGAACAGATATTGGAACAGTTTTGAAAAGTCATCATCCTTAGATGCATTCTAG

Protein Analysis

74

Amino Acids

8.58

Weight (kDa)

6.25

Isoelectric Point (pI)

38.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020359)

Species Orthologous Gene IDs
malus_domestica MD06G1221700.v1.1 MD15G1020400.v1.1
rosa_chinensis RchiOBHm_Chr6g0266601
rosa_laevigata RLG00000014101
rosa_multiflora Rmu_sc0002769.1_g000001
rosa_roxburghii Rroxscaffold_7G00201730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 24
AgsI TTSAA 3 cut(s) 149, 169, 194
AjnI CCWGG 1 cut(s) 54
AluBI AGCT 3 cut(s) 62, 66, 152
AluI AGCT 3 cut(s) 62, 66, 152
ApoI RAATTY 1 cut(s) 24
AsuNHI GCTAGC 1 cut(s) 62
BceAI ACGGC 1 cut(s) 128
BciT130I CCWGG 1 cut(s) 56
BfaI CTAG 2 cut(s) 63, 220
Bme1390I CCNGG 1 cut(s) 56
BmrFI CCNGG 1 cut(s) 56
BmsI GCATC 2 cut(s) 130, 202
BmtI GCTAGC 1 cut(s) 66
BseBI CCWGG 1 cut(s) 56
BseGI GGATG 1 cut(s) 203
BseRI GAGGAG 1 cut(s) 31
BsmI GAATGC 1 cut(s) 215
BspOI GCTAGC 1 cut(s) 66
Bst2UI CCWGG 1 cut(s) 56
Bst4CI ACNGT 1 cut(s) 188
BstC8I GCNNGC 1 cut(s) 64
BstDEI CTNAG 1 cut(s) 208
BstF5I GGATG 1 cut(s) 203
BstMWI GCNNNNNNNGC 1 cut(s) 149
BstNI CCWGG 1 cut(s) 56
BstSCI CCNGG 1 cut(s) 54
BtsCI GGATG 1 cut(s) 203
Cac8I GCNNGC 1 cut(s) 64
CviAII CATG 2 cut(s) 74, 104
CviJI RGCY 4 cut(s) 47, 62, 66, 152
CviKI_1 RGCY 4 cut(s) 47, 62, 66, 152
DdeI CTNAG 1 cut(s) 208
EcoRI GAATTC 1 cut(s) 24
EcoRII CCWGG 1 cut(s) 54
EcoT22I ATGCAT 2 cut(s) 109, 217
FaeI CATG 2 cut(s) 77, 107
FaiI YATR 3 cut(s) 75, 105, 141
FatI CATG 2 cut(s) 73, 103
FokI GGATG 1 cut(s) 190
FspBI CTAG 2 cut(s) 63, 220
Hin1II CATG 2 cut(s) 77, 107
HinfI GANTC 2 cut(s) 127, 155
Hpy188I TCNGA 2 cut(s) 13, 126
Hpy188III TCNNGA 1 cut(s) 131
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4V TGCA 2 cut(s) 107, 215
HpyF10VI GCNNNNNNNGC 1 cut(s) 149
HpyF3I CTNAG 1 cut(s) 208
Hsp92II CATG 2 cut(s) 77, 107
LmnI GCTCC 1 cut(s) 18
LpnPI CCDG 2 cut(s) 41, 68
LweI GCATC 2 cut(s) 130, 202
MaeI CTAG 2 cut(s) 63, 220
MboII GAAGA 1 cut(s) 181
MluCI AATT 1 cut(s) 24
MnlI CCTC 1 cut(s) 9
Mph1103I ATGCAT 2 cut(s) 109, 217
MspR9I CCNGG 1 cut(s) 56
Mva1269I GAATGC 1 cut(s) 215
MvaI CCWGG 1 cut(s) 56
MwoI GCNNNNNNNGC 1 cut(s) 149
NheI GCTAGC 1 cut(s) 62
NlaIII CATG 2 cut(s) 77, 107
NsiI ATGCAT 2 cut(s) 109, 217
PcsI WCGNNNNNNNCGW 1 cut(s) 141
PctI GAATGC 1 cut(s) 215
PfeI GAWTC 2 cut(s) 127, 155
PfoI TCCNGGA 1 cut(s) 54
Psp6I CCWGG 1 cut(s) 54
PspGI CCWGG 1 cut(s) 54
ScrFI CCNGG 1 cut(s) 56
SetI ASST 3 cut(s) 64, 68, 154
SfaNI GCATC 2 cut(s) 130, 202
SgeI CNNG 8 cut(s) 61, 67, 68, 75, 86, 116, 143, 148
Sse9I AATT 1 cut(s) 24
SspMI CTAG 2 cut(s) 63, 220
StyD4I CCNGG 1 cut(s) 54
TaaI ACNGT 1 cut(s) 188
TaqI TCGA 1 cut(s) 84
TaqII GACCGA 1 cut(s) 59
TasI AATT 1 cut(s) 24
TfiI GAWTC 2 cut(s) 127, 155
TspGWI ACGGA 1 cut(s) 111
XapI RAATTY 1 cut(s) 24
XspI CTAG 2 cut(s) 63, 220
Zsp2I ATGCAT 2 cut(s) 109, 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.