Rmu_sc0002769.1_g000001

Purple acid phosphatase

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002769.1
Physical Location & Seq
Forward (+)
3609 .. 4486
878 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002769.1_g000001.1.cds

Sequence Viewer

Length: 396 bp
atggttgattgtcttaatgcattccccatgtacaaagttgacgtggtattttctggtcatgtccatgcctatgaacgatctgaacgcatatccaatgttgcatataacattacaaatggtaattgcattcctgtgaaagatcaatctgcacctgtgtacattaccattggggatggaggaaatcttgaaggcttagcaacctccatgacagagccacagccagagtactcggcctatcgagaggccagttttggtcatgccatttttgacatcaagaaccgaagccatgcttactttagttggcaccgtaatcaagatggatatgctgtagaagctgattctatggtgttcttcaatagatactttcatcctcttgataattccacaagtgcttga

Protein Analysis

131

Amino Acids

14.75

Weight (kDa)

5.35

Isoelectric Point (pI)

36.81

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0020359)

Species Orthologous Gene IDs
malus_domestica MD06G1221700.v1.1 MD15G1020400.v1.1
rosa_chinensis RchiOBHm_Chr6g0266601
rosa_laevigata RLG00000014101
rosa_multiflora Rmu_sc0002769.1_g000001
rosa_roxburghii Rroxscaffold_7G00201730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 303
AfaI GTAC 3 cut(s) 32, 158, 227
AgsI TTSAA 2 cut(s) 188, 355
AjiI CACGTC 1 cut(s) 43
AluBI AGCT 1 cut(s) 335
AluI AGCT 1 cut(s) 335
AoxI GGCC 2 cut(s) 231, 243
BanI GGYRCC 1 cut(s) 303
BccI CCATC 2 cut(s) 167, 311
BfmI CTRYAG 1 cut(s) 327
BlpI GCTNAGC 1 cut(s) 193
BmcAI AGTACT 1 cut(s) 227
BmgBI CACGTC 1 cut(s) 43
BmiI GGNNCC 1 cut(s) 305
Bpu1102I GCTNAGC 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 246
BseGI GGATG 2 cut(s) 178, 367
BseNI ACTGG 1 cut(s) 246
BsgI GTGCAG 1 cut(s) 132
BshFI GGCC 2 cut(s) 233, 245
BshNI GGYRCC 1 cut(s) 303
BsmI GAATGC 2 cut(s) 20, 126
BsnI GGCC 2 cut(s) 233, 245
Bsp1407I TGTACA 2 cut(s) 30, 156
Bsp143I GATC 2 cut(s) 77, 139
Bsp1720I GCTNAGC 1 cut(s) 193
BspANI GGCC 2 cut(s) 233, 245
BspLI GGNNCC 1 cut(s) 305
BspT107I GGYRCC 1 cut(s) 303
BsrGI TGTACA 2 cut(s) 30, 156
BsrI ACTGG 1 cut(s) 246
BssMI GATC 2 cut(s) 77, 139
Bst4CI ACNGT 1 cut(s) 308
BstAUI TGTACA 2 cut(s) 30, 156
BstDEI CTNAG 1 cut(s) 193
BstF5I GGATG 2 cut(s) 178, 367
BstKTI GATC 2 cut(s) 80, 142
BstMBI GATC 2 cut(s) 77, 139
BstMWI GCNNNNNNNGC 1 cut(s) 332
BstSFI CTRYAG 1 cut(s) 327
BsuRI GGCC 2 cut(s) 233, 245
BtrI CACGTC 1 cut(s) 43
BtsCI GGATG 2 cut(s) 178, 367
Csp6I GTAC 3 cut(s) 31, 157, 226
CviAII CATG 6 cut(s) 28, 59, 65, 205, 257, 287
CviJI RGCY 7 cut(s) 192, 214, 220, 233, 245, 285, 335
CviKI_1 RGCY 7 cut(s) 192, 214, 220, 233, 245, 285, 335
CviQI GTAC 3 cut(s) 31, 157, 226
DdeI CTNAG 1 cut(s) 193
DpnI GATC 2 cut(s) 79, 141
DpnII GATC 2 cut(s) 77, 139
EcoT22I ATGCAT 1 cut(s) 22
FaeI CATG 6 cut(s) 31, 62, 68, 208, 260, 290
FalI AAGNNNNNCTT 2 cut(s) 274, 306
FatI CATG 6 cut(s) 27, 58, 64, 204, 256, 286
FokI GGATG 2 cut(s) 185, 354
HaeIII GGCC 2 cut(s) 233, 245
Hin1II CATG 6 cut(s) 31, 62, 68, 208, 260, 290
HincII GTYRAC 1 cut(s) 40
HindII GTYRAC 1 cut(s) 40
HinfI GANTC 1 cut(s) 338
Hpy166II GTNNAC 2 cut(s) 40, 157
Hpy188I TCNGA 1 cut(s) 82
Hpy188III TCNNGA 5 cut(s) 185, 239, 274, 314, 374
Hpy8I GTNNAC 2 cut(s) 40, 157
HpyAV CCTTC 1 cut(s) 182
HpyCH4III ACNGT 1 cut(s) 308
HpyCH4IV ACGT 1 cut(s) 42
HpyCH4V TGCA 4 cut(s) 20, 101, 126, 149
HpyF10VI GCNNNNNNNGC 1 cut(s) 332
HpyF3I CTNAG 1 cut(s) 193
HpySE526I ACGT 1 cut(s) 42
Hsp92II CATG 6 cut(s) 31, 62, 68, 208, 260, 290
Kzo9I GATC 2 cut(s) 77, 139
LpnPI CCDG 5 cut(s) 39, 144, 165, 234, 259
MaeII ACGT 1 cut(s) 42
MalI GATC 2 cut(s) 79, 141
MboI GATC 2 cut(s) 77, 139
MboII GAAGA 1 cut(s) 343
MluCI AATT 2 cut(s) 121, 379
MnlI CCTC 4 cut(s) 170, 211, 235, 381
Mph1103I ATGCAT 1 cut(s) 22
MseI TTAA 1 cut(s) 15
MslI CAYNNNNRTG 3 cut(s) 63, 69, 131
Mva1269I GAATGC 2 cut(s) 20, 126
MwoI GCNNNNNNNGC 1 cut(s) 332
NdeII GATC 2 cut(s) 77, 139
NlaIII CATG 6 cut(s) 31, 62, 68, 208, 260, 290
NlaIV GGNNCC 1 cut(s) 305
NmeAIII GCCGAG 1 cut(s) 209
NsiI ATGCAT 1 cut(s) 22
PctI GAATGC 2 cut(s) 20, 126
PfeI GAWTC 1 cut(s) 338
PspN4I GGNNCC 1 cut(s) 305
RsaI GTAC 3 cut(s) 32, 158, 227
RsaNI GTAC 3 cut(s) 31, 157, 226
RseI CAYNNNNRTG 3 cut(s) 63, 69, 131
SaqAI TTAA 1 cut(s) 15
Sau3AI GATC 2 cut(s) 77, 139
ScaI AGTACT 1 cut(s) 227
SetI ASST 4 cut(s) 45, 154, 203, 337
SfcI CTRYAG 1 cut(s) 327
SmiMI CAYNNNNRTG 3 cut(s) 63, 69, 131
Sse9I AATT 2 cut(s) 121, 379
TaaI ACNGT 1 cut(s) 308
TaiI ACGT 1 cut(s) 45
TaqI TCGA 1 cut(s) 238
TasI AATT 2 cut(s) 121, 379
TatI WGTACW 3 cut(s) 30, 156, 225
TfiI GAWTC 1 cut(s) 338
Tru1I TTAA 1 cut(s) 15
Tru9I TTAA 1 cut(s) 15
TspDTI ATGAA 2 cut(s) 87, 356
ZrmI AGTACT 1 cut(s) 227
Zsp2I ATGCAT 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.