RLG00000014101

Purple acid phosphatase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0020359
Physical Location & Seq
Reverse (-)
47169567 .. 47170371
805 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000014101

Sequence Viewer

Length: 390 bp
ATGTTTGAGCCGTGGTTTGTACAGTACAAAGTTGACGTGGTATTTTCTAGTCATGACCATGCCTATGAACGATCTGAACGCATATTCAATGTAGCATATAACATTACAAATGGTAATTTCATTCGTGTGAAAGATCAATCTGCACTTGTGTACATTACCATTGGGGATGGAGGAAATCTTGAAGGCTTAGCAACCTTCATGACAGAGCCACAGCCAGAGTACTCGGCCTATCGAGAGGACAGTTTTGGTCATGCCATTTTTGACATCAAGAACCGAAGCCATGCTTATTTTAGTTGGCGCCATAATCAAGATAGATATGCTATAGAAGCTGATTCTATGATTTTTTTGAATAGATGCTTTCATCCTCTTGATGATTCCACAAGTGCTTGA

Protein Analysis

130

Amino Acids

15.06

Weight (kDa)

5.2

Isoelectric Point (pI)

40.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Metallophos_C PF14008 48 - 105 3.6e-17 Iron/zinc purple acid phosphatase-like protein C
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0020359)

Species Orthologous Gene IDs
malus_domestica MD06G1221700.v1.1 MD15G1020400.v1.1
rosa_chinensis RchiOBHm_Chr6g0266601
rosa_laevigata RLG00000014101
rosa_multiflora Rmu_sc0002769.1_g000001
rosa_roxburghii Rroxscaffold_7G00201730

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 297
AcyI GRCGYC 1 cut(s) 298
AfaI GTAC 4 cut(s) 21, 26, 152, 221
AgsI TTSAA 3 cut(s) 88, 182, 349
AjiI CACGTC 1 cut(s) 37
AluBI AGCT 1 cut(s) 329
AluI AGCT 1 cut(s) 329
AoxI GGCC 1 cut(s) 225
AspLEI GCGC 1 cut(s) 300
BanI GGYRCC 1 cut(s) 297
BccI CCATC 1 cut(s) 161
BfaI CTAG 1 cut(s) 48
BfmI CTRYAG 1 cut(s) 321
BfoI RGCGCY 1 cut(s) 301
BlpI GCTNAGC 1 cut(s) 187
BmcAI AGTACT 1 cut(s) 221
BmgBI CACGTC 1 cut(s) 37
BmiI GGNNCC 1 cut(s) 299
BmsI GCATC 1 cut(s) 344
Bpu1102I GCTNAGC 1 cut(s) 187
BsaHI GRCGYC 1 cut(s) 298
BsaJI CCNNGG 1 cut(s) 11
BseDI CCNNGG 1 cut(s) 11
BseGI GGATG 2 cut(s) 172, 361
BsgI GTGCAG 1 cut(s) 126
BshFI GGCC 1 cut(s) 227
BshNI GGYRCC 1 cut(s) 297
BsnI GGCC 1 cut(s) 227
Bsp1407I TGTACA 2 cut(s) 19, 150
Bsp143I GATC 2 cut(s) 71, 133
Bsp1720I GCTNAGC 1 cut(s) 187
BspANI GGCC 1 cut(s) 227
BspHI TCATGA 2 cut(s) 52, 198
BspLI GGNNCC 1 cut(s) 299
BspT107I GGYRCC 1 cut(s) 297
BsrGI TGTACA 2 cut(s) 19, 150
BssECI CCNNGG 1 cut(s) 11
BssMI GATC 2 cut(s) 71, 133
BssNI GRCGYC 1 cut(s) 298
Bst4CI ACNGT 2 cut(s) 24, 242
BstACI GRCGYC 1 cut(s) 298
BstAUI TGTACA 2 cut(s) 19, 150
BstDEI CTNAG 1 cut(s) 187
BstDSI CCRYGG 1 cut(s) 11
BstF5I GGATG 2 cut(s) 172, 361
BstH2I RGCGCY 1 cut(s) 301
BstHHI GCGC 1 cut(s) 300
BstKTI GATC 2 cut(s) 74, 136
BstMBI GATC 2 cut(s) 71, 133
BstMWI GCNNNNNNNGC 1 cut(s) 326
BstSFI CTRYAG 1 cut(s) 321
BsuRI GGCC 1 cut(s) 227
BtgI CCRYGG 1 cut(s) 11
BtrI CACGTC 1 cut(s) 37
BtsCI GGATG 2 cut(s) 172, 361
CciI TCATGA 2 cut(s) 52, 198
CfoI GCGC 1 cut(s) 300
Csp6I GTAC 4 cut(s) 20, 25, 151, 220
CviAII CATG 5 cut(s) 53, 59, 199, 251, 281
CviJI RGCY 7 cut(s) 10, 186, 208, 214, 227, 279, 329
CviKI_1 RGCY 7 cut(s) 10, 186, 208, 214, 227, 279, 329
CviQI GTAC 4 cut(s) 20, 25, 151, 220
DdeI CTNAG 1 cut(s) 187
DinI GGCGCC 1 cut(s) 299
DpnI GATC 2 cut(s) 73, 135
DpnII GATC 2 cut(s) 71, 133
EgeI GGCGCC 1 cut(s) 299
EheI GGCGCC 1 cut(s) 299
FaeI CATG 5 cut(s) 56, 62, 202, 254, 284
FalI AAGNNNNNCTT 2 cut(s) 268, 300
FatI CATG 5 cut(s) 52, 58, 198, 250, 280
FokI GGATG 2 cut(s) 179, 348
FspBI CTAG 1 cut(s) 48
GlaI GCGC 1 cut(s) 299
HaeII RGCGCY 1 cut(s) 301
HaeIII GGCC 1 cut(s) 227
HhaI GCGC 1 cut(s) 300
Hin1I GRCGYC 1 cut(s) 298
Hin1II CATG 5 cut(s) 56, 62, 202, 254, 284
Hin6I GCGC 1 cut(s) 298
HinP1I GCGC 1 cut(s) 298
HincII GTYRAC 1 cut(s) 34
HindII GTYRAC 1 cut(s) 34
HinfI GANTC 2 cut(s) 332, 374
Hpy166II GTNNAC 2 cut(s) 34, 151
Hpy188I TCNGA 1 cut(s) 76
Hpy188III TCNNGA 7 cut(s) 53, 179, 199, 233, 268, 308, 368
Hpy8I GTNNAC 2 cut(s) 34, 151
HpyAV CCTTC 2 cut(s) 176, 205
HpyCH4III ACNGT 2 cut(s) 24, 242
HpyCH4IV ACGT 1 cut(s) 36
HpyCH4V TGCA 1 cut(s) 143
HpyF10VI GCNNNNNNNGC 1 cut(s) 326
HpyF3I CTNAG 1 cut(s) 187
HpySE526I ACGT 1 cut(s) 36
Hsp92I GRCGYC 1 cut(s) 298
Hsp92II CATG 5 cut(s) 56, 62, 202, 254, 284
HspAI GCGC 1 cut(s) 298
KasI GGCGCC 1 cut(s) 297
Kzo9I GATC 2 cut(s) 71, 133
LpnPI CCDG 1 cut(s) 228
LweI GCATC 1 cut(s) 344
MaeI CTAG 1 cut(s) 48
MaeII ACGT 1 cut(s) 36
MalI GATC 2 cut(s) 73, 135
MboI GATC 2 cut(s) 71, 133
MluCI AATT 1 cut(s) 115
Mly113I GGCGCC 1 cut(s) 298
MnlI CCTC 3 cut(s) 164, 229, 375
MslI CAYNNNNRTG 3 cut(s) 57, 63, 125
MwoI GCNNNNNNNGC 1 cut(s) 326
NarI GGCGCC 1 cut(s) 298
NdeII GATC 2 cut(s) 71, 133
NlaIII CATG 5 cut(s) 56, 62, 202, 254, 284
NlaIV GGNNCC 1 cut(s) 299
NmeAIII GCCGAG 1 cut(s) 203
PagI TCATGA 2 cut(s) 52, 198
PfeI GAWTC 2 cut(s) 332, 374
PluTI GGCGCC 1 cut(s) 301
PspN4I GGNNCC 1 cut(s) 299
RsaI GTAC 4 cut(s) 21, 26, 152, 221
RsaNI GTAC 4 cut(s) 20, 25, 151, 220
RseI CAYNNNNRTG 3 cut(s) 57, 63, 125
Sau3AI GATC 2 cut(s) 71, 133
ScaI AGTACT 1 cut(s) 221
SetI ASST 3 cut(s) 39, 197, 331
SfaNI GCATC 1 cut(s) 344
SfcI CTRYAG 1 cut(s) 321
SfoI GGCGCC 1 cut(s) 299
SmiMI CAYNNNNRTG 3 cut(s) 57, 63, 125
Sse9I AATT 1 cut(s) 115
SspDI GGCGCC 1 cut(s) 297
SspMI CTAG 1 cut(s) 48
TaaI ACNGT 2 cut(s) 24, 242
TaiI ACGT 1 cut(s) 39
TaqI TCGA 1 cut(s) 232
TasI AATT 1 cut(s) 115
TatI WGTACW 4 cut(s) 19, 24, 150, 219
TfiI GAWTC 2 cut(s) 332, 374
TspDTI ATGAA 4 cut(s) 81, 109, 187, 350
XspI CTAG 1 cut(s) 48
ZrmI AGTACT 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.