Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0011112

Physical Location & Seq

Genomic Coordinates Forward (+)

1030594 .. 1033087

Gene Structure 2494 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1011400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1002 bp

ATGGAAGCTCACGGGTCGGGGCTGCGGCGCGTGTTGGTGTTCGGCTTCTGTGTCGTCGGAATTTGGGCTGCCTATATTTACCAAGGCGTTCTTCAGGAAACTCTGTCCACGAAGCGATTCGGGCGAGATGGGCATAGGTTCGAACACCTTGCATTCTTGAACTTGGCTCAGAATGCGGTCTGTCTATCTGTGATAAAGCTTTGGTCTAGCAGTAATGCTGGAGGCGCTCCGAAGTGGACATTCTGGAGTGCAGGGATTACTAACACGATTGGACCCGCTATGGGGATCGAAGCGTTGAAGTACATCAGTTACCCGGCTCAGGGTCTTGGCAAAGTCCTAAAAAATGATTCCAGTTACGTGTATGCAGTGATGCTGATGGGTACTCTAGTCTACGGCAAAAGATACAGCTTTCCTGAATATGTTTGTATTCTTCTTGTCGCCGGAGGAGTATCCATATTTGCACTCTTGAAGACCAGTTCAAAGACTATTAGCAAGCTGGCACACCCAAATGCTCCCCTTGGATACGGACTATGTTTCCTCAACCTTGCTTTTGATGGATTCACAAATGCTACCCAGGACTCGATAACTGCAAGGTATCCAAAGACGAGCGCTTGGGATATAATGTTGGGCATGAATTTATGGGGTACCATATACAACACGATCTACATGTTTGGCTGGCCTCGTGGCAGCGGATTTGAGGCAGTCCAATTCTGCAAGCAGCATCCAGAAGCGGCTTGGGACATTTTTCTCTATTGTCTCTGTGGTGCTGTTGGACAGAACTTCATTTTCCTAACCATAAGTCAATTTGGTTCCTTAGCTAACACCACCATTACCACAACCCGCAAGTTTGTAAGCATCGTGGTGTCTTCGGTGCTGAGCGGCAATCCCCTGTCAACGAAGCAATGGGGATCAGTTGTCATGGTATTTTCCGGGCTGTCGTATCACATATACCACAAGTGGAGGAAATTGCAGAGAGCGCCACAAAAGAGAAAGCCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005215 GO:0005338 GO:0005459 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009553 GO:0009555 GO:0009987 GO:0010033 GO:0012505 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0030173 GO:0030176 GO:0030968 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0032501 GO:0032502 GO:0033554 GO:0034220 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071702 GO:0071705 GO:0072334 GO:0090481 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

334

Amino Acids

36.84

Weight (kDa)

9.64

Isoelectric Point (pI)

27.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	14 - 318	3e-68	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14360 AT2G02810
fragaria_vesca	FvH4_4g31670
malus_domestica	MD07G1011400.v1.1 MD13G1076000.v1.1 MD16G1076200.v1.1
prunus_persica	Prupe.1G270800_v2.0.a1
pyrus_communis	pycom07g00950 pycom13g06690 pycom16g06620
rosa_chinensis	RchiOBHm_Chr4g0440181
rosa_laevigata	RLG00000006198
rosa_multiflora	Rmu_sc0001685.1_g000024
rosa_roxburghii	Rroxscaffold_5G00381110
rosa_rugosa	Rorug04G0325100
rosa_samantha	Rh4AG375800 Rh4BG388700 Rh4CG403100 Rh4DG382500
rosa_wichuraiana	Rw4G032160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	644
AccB1I	GGYRCC	1 cut(s)	644
AccBSI	CCGCTC	1 cut(s)	879
AccI	GTMKAC	1 cut(s)	390
AccII	CGCG	1 cut(s)	30
AciI	CCGC	7 cut(s)	25, 176, 276, 690, 731, 841, 879
AclWI	GGATC	2 cut(s)	293, 916
AcsI	RAATTY	2 cut(s)	60, 634
AcuI	CTGAAG	1 cut(s)	77
AfaI	GTAC	3 cut(s)	302, 382, 646
AfeI	AGCGCT	1 cut(s)	610
AfiI	CCNNNNNNNGG	4 cut(s)	281, 282, 319, 320
AflIII	ACRYGT	2 cut(s)	357, 666
AgsI	TTSAA	4 cut(s)	160, 298, 469, 480
AjnI	CCWGG	1 cut(s)	573
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AluBI	AGCT	5 cut(s)	8, 199, 408, 496, 818
AluI	AGCT	5 cut(s)	8, 199, 408, 496, 818
Alw26I	GTCTC	1 cut(s)	761
AlwI	GGATC	2 cut(s)	293, 916
Aor51HI	AGCGCT	1 cut(s)	610
AoxI	GGCC	1 cut(s)	677
ApeKI	GCWGC	4 cut(s)	22, 68, 687, 718
ApoI	RAATTY	2 cut(s)	60, 634
Asp700I	GAANNNNTTC	1 cut(s)	116
Asp718I	GGTACC	1 cut(s)	644
AspLEI	GCGC	4 cut(s)	30, 227, 611, 979
AspS9I	GGNCC	1 cut(s)	272
AsuC2I	CCSGG	2 cut(s)	314, 931
AsuII	TTCGAA	1 cut(s)	141
AvaII	GGWCC	1 cut(s)	272
BaeI	ACNNNNGTAYC	2 cut(s)	372, 405
BanI	GGYRCC	1 cut(s)	644
BauI	CACGAG	1 cut(s)	681
BbsI	GAAGAC	2 cut(s)	476, 858
BbvI	GCAGC	4 cut(s)	9, 55, 699, 730
BccI	CCATC	3 cut(s)	122, 370, 548
BceAI	ACGGC	1 cut(s)	409
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	1 cut(s)	575
BciVI	GTATCC	3 cut(s)	460, 515, 606
BcnI	CCSGG	2 cut(s)	314, 931
BcoDI	GTCTC	1 cut(s)	761
BfaI	CTAG	2 cut(s)	207, 386
BfoI	RGCGCY	3 cut(s)	228, 612, 980
BfuI	GTATCC	3 cut(s)	460, 515, 606
BisI	GCNGC	7 cut(s)	23, 26, 69, 688, 719, 732, 880
BlpI	GCTNAGC	1 cut(s)	875
BlsI	GCNGC	7 cut(s)	24, 27, 70, 689, 720, 733, 881
Bme1390I	CCNGG	3 cut(s)	314, 575, 931
Bme18I	GGWCC	1 cut(s)	272
BmgT120I	GGNCC	1 cut(s)	272
BmiI	GGNNCC	3 cut(s)	274, 646, 811
BmrFI	CCNGG	3 cut(s)	314, 575, 931
BmsI	GCATC	3 cut(s)	360, 730, 864
BpiI	GAAGAC	2 cut(s)	476, 858
BpmI	CTGGAG	2 cut(s)	240, 265
Bpu10I	CCTNAGC	2 cut(s)	318, 814
Bpu1102I	GCTNAGC	1 cut(s)	875
Bpu14I	TTCGAA	1 cut(s)	141
BpuMI	CCSGG	2 cut(s)	314, 931
BsaAI	YACGTR	1 cut(s)	358
BsaJI	CCNNGG	3 cut(s)	82, 517, 573
Bsc4I	CCNNNNNNNGG	4 cut(s)	281, 282, 319, 320
Bse1I	ACTGG	2 cut(s)	351, 474
Bse3DI	GCAATG	1 cut(s)	908
BseBI	CCWGG	1 cut(s)	575
BseDI	CCNNGG	3 cut(s)	82, 517, 573
BseGI	GGATG	1 cut(s)	721
BseLI	CCNNNNNNNGG	4 cut(s)	281, 282, 319, 320
BseMI	GCAATG	1 cut(s)	908
BseMII	CTCAG	3 cut(s)	182, 332, 866
BseNI	ACTGG	2 cut(s)	351, 474
BseRI	GAGGAG	1 cut(s)	459
BseXI	GCAGC	4 cut(s)	9, 55, 699, 730
BsgI	GTGCAG	1 cut(s)	270
Bsh1236I	CGCG	1 cut(s)	30
BshFI	GGCC	1 cut(s)	679
BshNI	GGYRCC	1 cut(s)	644
BsiSI	CCGG	3 cut(s)	314, 441, 930
BslFI	GGGAC	1 cut(s)	752
BslI	CCNNNNNNNGG	4 cut(s)	281, 282, 319, 320
BsmAI	GTCTC	1 cut(s)	761
BsmFI	GGGAC	1 cut(s)	752
BsmI	GAATGC	2 cut(s)	152, 178
BsnI	GGCC	1 cut(s)	679
Bsp119I	TTCGAA	1 cut(s)	141
Bsp143I	GATC	3 cut(s)	285, 660, 908
Bsp1720I	GCTNAGC	1 cut(s)	875
BspACI	CCGC	7 cut(s)	25, 176, 276, 690, 731, 841, 879
BspANI	GGCC	1 cut(s)	679
BspCNI	CTCAG	3 cut(s)	181, 331, 867
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	3 cut(s)	274, 646, 811
BspPI	GGATC	2 cut(s)	293, 916
BspT104I	TTCGAA	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	644
BsrBI	CCGCTC	1 cut(s)	879
BsrDI	GCAATG	1 cut(s)	908
BsrI	ACTGG	2 cut(s)	351, 474
BssECI	CCNNGG	3 cut(s)	82, 517, 573
BssMI	GATC	3 cut(s)	285, 660, 908
BssSI	CACGAG	1 cut(s)	681
BssT1I	CCWWGG	2 cut(s)	82, 517
Bst2BI	CACGAG	1 cut(s)	681
Bst2UI	CCWGG	1 cut(s)	575
BstBAI	YACGTR	1 cut(s)	358
BstBI	TTCGAA	1 cut(s)	141
BstC8I	GCNNGC	4 cut(s)	494, 498, 677, 716
BstDEI	CTNAG	4 cut(s)	168, 318, 814, 875
BstF5I	GGATG	1 cut(s)	721
BstFNI	CGCG	1 cut(s)	30
BstH2I	RGCGCY	3 cut(s)	228, 612, 980
BstHHI	GCGC	4 cut(s)	30, 227, 611, 979
BstKTI	GATC	3 cut(s)	288, 663, 911
BstMAI	GTCTC	1 cut(s)	761
BstMBI	GATC	3 cut(s)	285, 660, 908
BstMWI	GCNNNNNNNGC	5 cut(s)	121, 130, 173, 224, 976
BstNI	CCWGG	1 cut(s)	575
BstNSI	RCATGY	1 cut(s)	670
BstSCI	CCNGG	3 cut(s)	312, 573, 929
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	4 cut(s)	9, 55, 699, 730
BstV2I	GAAGAC	2 cut(s)	476, 858
BsuI	GTATCC	3 cut(s)	460, 515, 606
BsuRI	GGCC	1 cut(s)	679
BtsCI	GGATG	1 cut(s)	721
BtsI	GCAGTG	1 cut(s)	372
BtsIMutI	CAGTG	1 cut(s)	372
Cac8I	GCNNGC	4 cut(s)	494, 498, 677, 716
CfoI	GCGC	4 cut(s)	30, 227, 611, 979
Cfr13I	GGNCC	1 cut(s)	272
Csp6I	GTAC	3 cut(s)	301, 381, 645
CviAII	CATG	3 cut(s)	631, 667, 919
CviQI	GTAC	3 cut(s)	301, 381, 645
DdeI	CTNAG	4 cut(s)	168, 318, 814, 875
DpnI	GATC	3 cut(s)	287, 662, 910
DpnII	GATC	3 cut(s)	285, 660, 908
Eco130I	CCWWGG	2 cut(s)	82, 517
Eco47I	GGWCC	1 cut(s)	272
Eco47III	AGCGCT	1 cut(s)	610
Eco57I	CTGAAG	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	573
EcoT14I	CCWWGG	2 cut(s)	82, 517
ErhI	CCWWGG	2 cut(s)	82, 517
FaeI	CATG	3 cut(s)	634, 670, 922
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	1 cut(s)	752
FatI	CATG	3 cut(s)	630, 666, 918
FauI	CCCGC	2 cut(s)	283, 848
FblI	GTMKAC	1 cut(s)	390
Fnu4HI	GCNGC	7 cut(s)	23, 26, 69, 688, 719, 732, 880
FokI	GGATG	1 cut(s)	708
Fsp4HI	GCNGC	7 cut(s)	23, 26, 69, 688, 719, 732, 880
FspBI	CTAG	2 cut(s)	207, 386
GlaI	GCGC	4 cut(s)	29, 226, 610, 978
GluI	GCNGC	7 cut(s)	23, 26, 69, 688, 719, 732, 880
GsuI	CTGGAG	2 cut(s)	240, 265
HaeII	RGCGCY	3 cut(s)	228, 612, 980
HaeIII	GGCC	1 cut(s)	679
HapII	CCGG	3 cut(s)	314, 441, 930
HhaI	GCGC	4 cut(s)	30, 227, 611, 979
Hin1II	CATG	3 cut(s)	634, 670, 922
Hin6I	GCGC	4 cut(s)	28, 225, 609, 977
HinP1I	GCGC	4 cut(s)	28, 225, 609, 977
HincII	GTYRAC	1 cut(s)	894
HindII	GTYRAC	1 cut(s)	894
HindIII	AAGCTT	1 cut(s)	197
HinfI	GANTC	4 cut(s)	117, 347, 558, 578
HpaII	CCGG	3 cut(s)	314, 441, 930
Hpy166II	GTNNAC	4 cut(s)	108, 237, 391, 894
Hpy188I	TCNGA	3 cut(s)	59, 171, 231
Hpy188III	TCNNGA	6 cut(s)	95, 157, 244, 413, 466, 725
Hpy8I	GTNNAC	4 cut(s)	108, 237, 391, 894
Hpy99I	CGWCG	1 cut(s)	59
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	7 cut(s)	152, 251, 365, 461, 590, 714, 970
HpyF10VI	GCNNNNNNNGC	5 cut(s)	121, 130, 173, 224, 976
HpyF3I	CTNAG	4 cut(s)	168, 318, 814, 875
HpySE526I	ACGT	1 cut(s)	357
Hsp92II	CATG	3 cut(s)	634, 670, 922
HspAI	GCGC	4 cut(s)	28, 225, 609, 977
KpnI	GGTACC	1 cut(s)	648
Kzo9I	GATC	3 cut(s)	285, 660, 908
LmnI	GCTCC	2 cut(s)	232, 517
Lsp1109I	GCAGC	4 cut(s)	9, 55, 699, 730
LweI	GCATC	3 cut(s)	360, 730, 864
MaeI	CTAG	2 cut(s)	207, 386
MaeII	ACGT	1 cut(s)	357
MaeIII	GTNAC	2 cut(s)	308, 353
MalI	GATC	3 cut(s)	287, 662, 910
MbiI	CCGCTC	1 cut(s)	879
MboI	GATC	3 cut(s)	285, 660, 908
MboII	GAAGA	4 cut(s)	83, 422, 481, 858
MluCI	AATT	5 cut(s)	60, 634, 707, 803, 965
MlyI	GAGTC	1 cut(s)	572
MmeI	TCCRAC	2 cut(s)	37, 751
MnlI	CCTC	6 cut(s)	215, 437, 548, 690, 691, 954
MroXI	GAANNNNTTC	1 cut(s)	116
MslI	CAYNNNNRTG	2 cut(s)	507, 860
MspA1I	CMGCKG	1 cut(s)	690
MspI	CCGG	3 cut(s)	314, 441, 930
MspR9I	CCNGG	3 cut(s)	314, 575, 931
Mva1269I	GAATGC	2 cut(s)	152, 178
MvaI	CCWGG	1 cut(s)	575
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	5 cut(s)	121, 130, 173, 224, 976
NciI	CCSGG	2 cut(s)	314, 931
NdeII	GATC	3 cut(s)	285, 660, 908
NlaIII	CATG	3 cut(s)	634, 670, 922
NlaIV	GGNNCC	3 cut(s)	274, 646, 811
NspI	RCATGY	1 cut(s)	670
NspV	TTCGAA	1 cut(s)	141
PciI	ACATGT	1 cut(s)	666
PctI	GAATGC	2 cut(s)	152, 178
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	3 cut(s)	117, 347, 558
PkrI	GCNGC	7 cut(s)	24, 27, 70, 689, 720, 733, 881
PleI	GAGTC	1 cut(s)	572
PpsI	GAGTC	1 cut(s)	572
Ppu21I	YACGTR	1 cut(s)	358
PscI	ACATGT	1 cut(s)	666
Psp6I	CCWGG	1 cut(s)	573
PspGI	CCWGG	1 cut(s)	573
PspN4I	GGNNCC	3 cut(s)	274, 646, 811
PspPI	GGNCC	1 cut(s)	272
RsaI	GTAC	3 cut(s)	302, 382, 646
RsaNI	GTAC	3 cut(s)	301, 381, 645
RseI	CAYNNNNRTG	2 cut(s)	507, 860
SatI	GCNGC	7 cut(s)	23, 26, 69, 688, 719, 732, 880
Sau3AI	GATC	3 cut(s)	285, 660, 908
Sau96I	GGNCC	1 cut(s)	272
SchI	GAGTC	1 cut(s)	572
ScrFI	CCNGG	3 cut(s)	314, 575, 931
SfaNI	GCATC	3 cut(s)	360, 730, 864
SfuI	TTCGAA	1 cut(s)	141
SinI	GGWCC	1 cut(s)	272
SmiMI	CAYNNNNRTG	2 cut(s)	507, 860
Sse9I	AATT	5 cut(s)	60, 634, 707, 803, 965
SsiI	CCGC	7 cut(s)	25, 176, 276, 690, 731, 841, 879
SspMI	CTAG	2 cut(s)	207, 386
StyD4I	CCNGG	3 cut(s)	312, 573, 929
StyI	CCWWGG	2 cut(s)	82, 517
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	3 cut(s)	141, 288, 581
TasI	AATT	5 cut(s)	60, 634, 707, 803, 965
TatI	WGTACW	1 cut(s)	300
TauI	GCSGC	3 cut(s)	28, 734, 882
TfiI	GAWTC	3 cut(s)	117, 347, 558
TscAI	CASTG	1 cut(s)	372
TseI	GCWGC	4 cut(s)	22, 68, 687, 718
TspDTI	ATGAA	2 cut(s)	647, 772
TspGWI	ACGGA	1 cut(s)	540
TspRI	CASTG	1 cut(s)	372
VpaK11BI	GGWCC	1 cut(s)	272
XapI	RAATTY	2 cut(s)	60, 634
XceI	RCATGY	1 cut(s)	670
XcmI	CCANNNNNNNNNTGG	1 cut(s)	732
XmiI	GTMKAC	1 cut(s)	390
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	2 cut(s)	207, 386

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.