Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011112

Physical Location & Seq

Genomic Coordinates Forward (+)

27797600 .. 27800578

Gene Structure 2979 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G270800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGAAGTTCACGGGTCGTTGCTCCAGCGTGTGTTGGTGTTCAGCTTCTGCGTCGTCGGAATTTGGACTGCTTATATTTACCAAGGCGTTCTTCAGGAAACTCTGTCCACGAAGCGGTTCGGGCCAGATGGGAATAGGTTCGAGCACCTTGCGTTCCTAAACTTGGCCCAAAATGTGGTCTGCCTAATCTGGTCCTATATAATGATAAAGCTCTGGAATAGTCGGAATGCTGGAGGTGCGCCTTTGTGGACATACTGGAGTGCAGGGATTACTAATACGATTGGACCCGCTATGGGGATTGAAGCTTTGAAGTATATTAGTTACCCGGCACAGGTCTTGGCAAAGTCCTCAAAAATGATTCCAGTGATGCTAATGGGTACTCTGGTCTACAAGCAAAGATACAGCTTTCCCGAATATGTTTGCACTCTCCTTGTTGCTGGAGGGGTATCCATATTTGCACTCTTGAGGACTAGCTCAAAGACTATCAGCAAGCTGGCTCGCCCAAATGCACCCCTTGGGTATGGACTGTGTTTCCTAAACCTTGCTTTTGATGGATTCACAAATGCTACCCAGGATTCCATAAAAGCAAGGTATCCAAAGACAAGCGCCTGGGAAATAATGTTAGGCATGAATTTATGGGGTACCATATACAACATGATCTACATGTTTGGCTGGCCACGGGGCAGCGGATTTGAGGCAGTCCAGTTCTGCAAGAGGCATCCAGAAGCAGCTTGGGACATTCTTCTCTTTTGTCTCTGTGGTGCTGTTGGCCAGAACTTCATTTTCCTAACCATAAGCCGATTTGGCTCCTTAGCTAACACCACCATTACCACTACCCGCAAGTTTGTGAGTATTGTGGTGTCTTCCTTGCTGAGTGGCAATCCTCTGTCAACAAAGCAATGGGGGTCTGTTGTCATGGTCTTTTCTGGGCTGTCGTATAACACCTACCTCAAGTGGAGGAAGTTGCAGAGAGTGCCGAAGAAGAGAAAGCCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005215 GO:0005338 GO:0005459 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009553 GO:0009555 GO:0009987 GO:0010033 GO:0012505 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0030173 GO:0030176 GO:0030968 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0032501 GO:0032502 GO:0033554 GO:0034220 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071702 GO:0071705 GO:0072334 GO:0090481 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

333

Amino Acids

37.24

Weight (kDa)

9.85

Isoelectric Point (pI)

27.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14360 AT2G02810
fragaria_vesca	FvH4_4g31670
malus_domestica	MD07G1011400.v1.1 MD13G1076000.v1.1 MD16G1076200.v1.1
prunus_persica	Prupe.1G270800_v2.0.a1
pyrus_communis	pycom07g00950 pycom13g06690 pycom16g06620
rosa_chinensis	RchiOBHm_Chr4g0440181
rosa_laevigata	RLG00000006198
rosa_multiflora	Rmu_sc0001685.1_g000024
rosa_roxburghii	Rroxscaffold_5G00381110
rosa_rugosa	Rorug04G0325100
rosa_samantha	Rh4AG375800 Rh4BG388700 Rh4CG403100 Rh4DG382500
rosa_wichuraiana	Rw4G032160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	641
AccB1I	GGYRCC	1 cut(s)	641
AccB7I	CCANNNNNTGG	1 cut(s)	175
AccI	GTMKAC	1 cut(s)	387
AciI	CCGC	4 cut(s)	115, 288, 687, 838
AcoI	YGGCCR	2 cut(s)	674, 769
AcsI	RAATTY	2 cut(s)	60, 631
AcuI	CTGAAG	1 cut(s)	77
AfaI	GTAC	2 cut(s)	379, 643
AfiI	CCNNNNNNNGG	6 cut(s)	114, 163, 175, 293, 294, 331
AflIII	ACRYGT	1 cut(s)	663
AgsI	TTSAA	2 cut(s)	302, 310
AjnI	CCWGG	2 cut(s)	570, 608
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AluBI	AGCT	8 cut(s)	45, 211, 305, 405, 474, 493, 731, 815
AluI	AGCT	8 cut(s)	45, 211, 305, 405, 474, 493, 731, 815
Alw21I	GWGCWC	1 cut(s)	147
Alw26I	GTCTC	1 cut(s)	758
AlwNI	CAGNNNCTG	1 cut(s)	48
AoxI	GGCC	4 cut(s)	122, 165, 674, 769
ApeKI	GCWGC	2 cut(s)	684, 728
ApoI	RAATTY	2 cut(s)	60, 631
Asp700I	GAANNNNTTC	2 cut(s)	116, 137
Asp718I	GGTACC	1 cut(s)	641
AspLEI	GCGC	2 cut(s)	241, 608
AspS9I	GGNCC	4 cut(s)	122, 166, 192, 284
AsuC2I	CCSGG	1 cut(s)	326
AvaII	GGWCC	2 cut(s)	192, 284
BaeI	ACNNNNGTAYC	2 cut(s)	369, 402
BalI	TGGCCA	2 cut(s)	676, 771
BanI	GGYRCC	1 cut(s)	641
BbsI	GAAGAC	1 cut(s)	855
Bbv12I	GWGCWC	1 cut(s)	147
BbvI	GCAGC	2 cut(s)	696, 740
BccI	CCATC	2 cut(s)	122, 545
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	2 cut(s)	572, 610
BciVI	GTATCC	2 cut(s)	457, 603
BcnI	CCSGG	1 cut(s)	326
BcoDI	GTCTC	1 cut(s)	758
BfaI	CTAG	1 cut(s)	471
BfoI	RGCGCY	1 cut(s)	609
BfuI	GTATCC	2 cut(s)	457, 603
BglI	GCCNNNNNGGC	1 cut(s)	804
BisI	GCNGC	2 cut(s)	685, 729
BlsI	GCNGC	2 cut(s)	686, 730
Bme1390I	CCNGG	3 cut(s)	326, 572, 610
Bme18I	GGWCC	2 cut(s)	192, 284
BmgT120I	GGNCC	4 cut(s)	122, 166, 192, 284
BmiI	GGNNCC	3 cut(s)	286, 643, 808
BmrFI	CCNGG	3 cut(s)	326, 572, 610
BmsI	GCATC	2 cut(s)	357, 727
BpiI	GAAGAC	1 cut(s)	855
BpmI	CTGGAG	4 cut(s)	8, 252, 277, 459
Bpu10I	CCTNAGC	1 cut(s)	811
BpuEI	CTTGAG	2 cut(s)	484, 935
BpuMI	CCSGG	1 cut(s)	326
BsaJI	CCNNGG	5 cut(s)	82, 514, 570, 609, 677
Bsc4I	CCNNNNNNNGG	6 cut(s)	114, 163, 175, 293, 294, 331
Bse1I	ACTGG	3 cut(s)	260, 362, 703
Bse3DI	GCAATG	1 cut(s)	905
BseBI	CCWGG	2 cut(s)	572, 610
BseDI	CCNNGG	5 cut(s)	82, 514, 570, 609, 677
BseGI	GGATG	1 cut(s)	718
BseLI	CCNNNNNNNGG	6 cut(s)	114, 163, 175, 293, 294, 331
BseMI	GCAATG	1 cut(s)	905
BseMII	CTCAG	1 cut(s)	863
BseNI	ACTGG	3 cut(s)	260, 362, 703
BseXI	GCAGC	2 cut(s)	696, 740
BsgI	GTGCAG	1 cut(s)	282
BshFI	GGCC	4 cut(s)	124, 167, 676, 771
BshNI	GGYRCC	1 cut(s)	641
BsiHKAI	GWGCWC	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	326
BslFI	GGGAC	1 cut(s)	749
BslI	CCNNNNNNNGG	6 cut(s)	114, 163, 175, 293, 294, 331
BsmAI	GTCTC	1 cut(s)	758
BsmFI	GGGAC	1 cut(s)	749
BsmI	GAATGC	1 cut(s)	232
BsnI	GGCC	4 cut(s)	124, 167, 676, 771
Bsp1286I	GDGCHC	1 cut(s)	147
Bsp143I	GATC	1 cut(s)	657
BspACI	CCGC	4 cut(s)	115, 288, 687, 838
BspANI	GGCC	4 cut(s)	124, 167, 676, 771
BspCNI	CTCAG	1 cut(s)	864
BspLI	GGNNCC	3 cut(s)	286, 643, 808
BspT107I	GGYRCC	1 cut(s)	641
BsrDI	GCAATG	1 cut(s)	905
BsrI	ACTGG	3 cut(s)	260, 362, 703
BssECI	CCNNGG	5 cut(s)	82, 514, 570, 609, 677
BssMI	GATC	1 cut(s)	657
BssT1I	CCWWGG	2 cut(s)	82, 514
Bst2UI	CCWGG	2 cut(s)	572, 610
Bst4CI	ACNGT	1 cut(s)	528
Bst6I	CTCTTC	1 cut(s)	977
BstAPI	GCANNNNNTGC	1 cut(s)	973
BstC8I	GCNNGC	4 cut(s)	491, 495, 499, 674
BstDEI	CTNAG	2 cut(s)	811, 872
BstDSI	CCRYGG	1 cut(s)	677
BstF5I	GGATG	1 cut(s)	718
BstH2I	RGCGCY	1 cut(s)	609
BstHHI	GCGC	2 cut(s)	241, 608
BstKTI	GATC	1 cut(s)	660
BstMAI	GTCTC	1 cut(s)	758
BstMBI	GATC	1 cut(s)	657
BstMWI	GCNNNNNNNGC	4 cut(s)	121, 236, 804, 973
BstNI	CCWGG	2 cut(s)	572, 610
BstNSI	RCATGY	1 cut(s)	667
BstSCI	CCNGG	3 cut(s)	324, 570, 608
BstV1I	GCAGC	2 cut(s)	696, 740
BstV2I	GAAGAC	1 cut(s)	855
BsuI	GTATCC	2 cut(s)	457, 603
BsuRI	GGCC	4 cut(s)	124, 167, 676, 771
BtgI	CCRYGG	1 cut(s)	677
BtsCI	GGATG	1 cut(s)	718
BtsIMutI	CAGTG	1 cut(s)	369
Cac8I	GCNNGC	4 cut(s)	491, 495, 499, 674
CaiI	CAGNNNCTG	1 cut(s)	48
CfoI	GCGC	2 cut(s)	241, 608
Cfr13I	GGNCC	4 cut(s)	122, 166, 192, 284
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	2 cut(s)	378, 642
CviAII	CATG	4 cut(s)	628, 655, 664, 916
CviQI	GTAC	2 cut(s)	378, 642
DdeI	CTNAG	2 cut(s)	811, 872
DpnI	GATC	1 cut(s)	659
DpnII	GATC	1 cut(s)	657
EaeI	YGGCCR	2 cut(s)	674, 769
Eam1104I	CTCTTC	1 cut(s)	977
EarI	CTCTTC	1 cut(s)	977
Eco130I	CCWWGG	2 cut(s)	82, 514
Eco47I	GGWCC	2 cut(s)	192, 284
Eco57I	CTGAAG	1 cut(s)	77
EcoRII	CCWGG	2 cut(s)	570, 608
EcoT14I	CCWWGG	2 cut(s)	82, 514
ErhI	CCWWGG	2 cut(s)	82, 514
FaeI	CATG	4 cut(s)	631, 658, 667, 919
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	1 cut(s)	749
FatI	CATG	4 cut(s)	627, 654, 663, 915
FauI	CCCGC	2 cut(s)	295, 845
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	2 cut(s)	685, 729
FokI	GGATG	1 cut(s)	705
Fsp4HI	GCNGC	2 cut(s)	685, 729
FspBI	CTAG	1 cut(s)	471
GlaI	GCGC	2 cut(s)	240, 607
GluI	GCNGC	2 cut(s)	685, 729
GsuI	CTGGAG	4 cut(s)	8, 252, 277, 459
HaeII	RGCGCY	1 cut(s)	609
HaeIII	GGCC	4 cut(s)	124, 167, 676, 771
HapII	CCGG	1 cut(s)	326
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	2 cut(s)	241, 608
Hin1II	CATG	4 cut(s)	631, 658, 667, 919
Hin6I	GCGC	2 cut(s)	239, 606
HinP1I	GCGC	2 cut(s)	239, 606
HincII	GTYRAC	1 cut(s)	891
HindII	GTYRAC	1 cut(s)	891
HindIII	AAGCTT	1 cut(s)	303
HinfI	GANTC	3 cut(s)	358, 555, 575
HpaII	CCGG	1 cut(s)	326
Hpy166II	GTNNAC	5 cut(s)	10, 108, 249, 388, 891
Hpy188I	TCNGA	2 cut(s)	59, 225
Hpy188III	TCNNGA	5 cut(s)	95, 214, 410, 463, 722
Hpy8I	GTNNAC	5 cut(s)	10, 108, 249, 388, 891
Hpy99I	CGWCG	2 cut(s)	56, 59
HpyCH4III	ACNGT	1 cut(s)	528
HpyCH4V	TGCA	6 cut(s)	263, 423, 458, 509, 711, 967
HpyF10VI	GCNNNNNNNGC	4 cut(s)	121, 236, 804, 973
HpyF3I	CTNAG	2 cut(s)	811, 872
Hsp92II	CATG	4 cut(s)	631, 658, 667, 919
HspAI	GCGC	2 cut(s)	239, 606
KpnI	GGTACC	1 cut(s)	645
Kzo9I	GATC	1 cut(s)	657
LmnI	GCTCC	2 cut(s)	27, 812
Lsp1109I	GCAGC	2 cut(s)	696, 740
LweI	GCATC	2 cut(s)	357, 727
MaeI	CTAG	1 cut(s)	471
MaeIII	GTNAC	1 cut(s)	320
MalI	GATC	1 cut(s)	659
MboI	GATC	1 cut(s)	657
MboII	GAAGA	5 cut(s)	83, 734, 855, 991, 994
MhlI	GDGCHC	1 cut(s)	147
MlsI	TGGCCA	2 cut(s)	676, 771
MluCI	AATT	2 cut(s)	60, 631
MluNI	TGGCCA	2 cut(s)	676, 771
MmeI	TCCRAC	2 cut(s)	37, 203
MnlI	CCTC	9 cut(s)	227, 358, 434, 459, 688, 708, 894, 951, 959
Mox20I	TGGCCA	2 cut(s)	676, 771
MroXI	GAANNNNTTC	2 cut(s)	116, 137
MscI	TGGCCA	2 cut(s)	676, 771
Msp20I	TGGCCA	2 cut(s)	676, 771
MspA1I	CMGCKG	1 cut(s)	687
MspI	CCGG	1 cut(s)	326
MspR9I	CCNGG	3 cut(s)	326, 572, 610
Mva1269I	GAATGC	1 cut(s)	232
MvaI	CCWGG	2 cut(s)	572, 610
MwoI	GCNNNNNNNGC	4 cut(s)	121, 236, 804, 973
NciI	CCSGG	1 cut(s)	326
NdeII	GATC	1 cut(s)	657
NlaIII	CATG	4 cut(s)	631, 658, 667, 919
NlaIV	GGNNCC	3 cut(s)	286, 643, 808
NspI	RCATGY	1 cut(s)	667
PciI	ACATGT	1 cut(s)	663
PctI	GAATGC	1 cut(s)	232
PdmI	GAANNNNTTC	2 cut(s)	116, 137
PfeI	GAWTC	3 cut(s)	358, 555, 575
PflMI	CCANNNNNTGG	1 cut(s)	175
PkrI	GCNGC	2 cut(s)	686, 730
PscI	ACATGT	1 cut(s)	663
Psp6I	CCWGG	2 cut(s)	570, 608
PspGI	CCWGG	2 cut(s)	570, 608
PspN4I	GGNNCC	3 cut(s)	286, 643, 808
PspPI	GGNCC	4 cut(s)	122, 166, 192, 284
PstNI	CAGNNNCTG	1 cut(s)	48
RsaI	GTAC	2 cut(s)	379, 643
RsaNI	GTAC	2 cut(s)	378, 642
SatI	GCNGC	2 cut(s)	685, 729
Sau3AI	GATC	1 cut(s)	657
Sau96I	GGNCC	4 cut(s)	122, 166, 192, 284
ScrFI	CCNGG	3 cut(s)	326, 572, 610
SduI	GDGCHC	1 cut(s)	147
SfaNI	GCATC	2 cut(s)	357, 727
SinI	GGWCC	2 cut(s)	192, 284
SmlI	CTYRAG	2 cut(s)	463, 950
SmoI	CTYRAG	2 cut(s)	463, 950
Sse9I	AATT	2 cut(s)	60, 631
SsiI	CCGC	4 cut(s)	115, 288, 687, 838
SspMI	CTAG	1 cut(s)	471
StyD4I	CCNGG	3 cut(s)	324, 570, 608
StyI	CCWWGG	2 cut(s)	82, 514
TaaI	ACNGT	1 cut(s)	528
TaqI	TCGA	1 cut(s)	141
TasI	AATT	2 cut(s)	60, 631
TfiI	GAWTC	3 cut(s)	358, 555, 575
TscAI	CASTG	1 cut(s)	369
TseI	GCWGC	2 cut(s)	684, 728
TspDTI	ATGAA	2 cut(s)	644, 769
TspRI	CASTG	1 cut(s)	369
Van91I	CCANNNNNTGG	1 cut(s)	175
VpaK11BI	GGWCC	2 cut(s)	192, 284
XapI	RAATTY	2 cut(s)	60, 631
XceI	RCATGY	1 cut(s)	667
XcmI	CCANNNNNNNNNTGG	1 cut(s)	729
XmiI	GTMKAC	1 cut(s)	387
XmnI	GAANNNNTTC	2 cut(s)	116, 137
XspI	CTAG	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.