Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0011112

Physical Location & Seq

Genomic Coordinates Reverse (-)

5391568 .. 5394371

Gene Structure 2804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1076000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGAAGCGCACGGGTCGGGGCTCCGGCGCGTGTTGGTGTTCGGCTTCTGCGTCGTTGGAATTTGGGCTGCTTATATCTACCAAGGCGTGCTTCAGGAAACTCTGTCCACGAAGCGATTCGGGCCAGATGGGGATAGGTTCGAACACCTTGCGTTCCTGAACCTGGCTCAAAATGTGGTTTGTCTAATCTGGTCATATATAATGTTAAAGCTTTGGTCTAGTAGTAATGCTGGAGGCGCACCTATGTGGACGTACTGGAGTGCCGGGATTACTAATACGATTGGACCCGCTATGGGGATCGAAGCGTTGAAGTATATCAGTTATCCGGCTCAGGTCTTGGCAAAGTCCTCAAAAATGATACCAGTGATGCTGATGGGTACTCTAGTCTACGGCAAAAGATACAGCTTTCCTGAATATGTTTGTACTCTCCTTGTTGCCGGAGGGGTATCCATATTTGCACTCTTGAAGACTAGCTCAAAGACTATTAGCAAGTTGGCACACCCGAATGCTCCCCTTGGATATGGACTATGTTTTCTCAACCTCGCTTTTGATGGATTCACAAATGCCACCCAGGATTCAATAACTGCAAGGTATCCAAAAACAAGCGCCTGGGAAATAATGTTAGGCATGAATTTATGGGGTACCATATACAACATGATTTATATGTTTGGCTGGCCCCGTGGCAGCGGATTTGAGGCGGTTCAGTTCTGCAAGCTGCATCCGGAAGCAGCTTGGGACATTCTTCTCTATTGCCTCTGCGGTGCAGTTGGGCAGAACTTCATTTTCCTAACCATAAGTCGTTTTGGTTCCTTAGCTAACACCACCATTACCACTACCCGCAAGTTTGTAAGCATCGTGGTGTCTTCGGTGCTGAGTGGCAATCCCCTGTCAACAAAGCAGTGGGGGTCTGTTTTCATGGTGTTTTCTGGGTTGTCATATCACATCTACCACAAGTGGAGGAAAGCCCAGAGAGCGCCAAAGAAGAGAAAGCCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005215 GO:0005338 GO:0005459 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009553 GO:0009555 GO:0009987 GO:0010033 GO:0012505 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0030173 GO:0030176 GO:0030968 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0032501 GO:0032502 GO:0033554 GO:0034220 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071702 GO:0071705 GO:0072334 GO:0090481 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

333

Amino Acids

36.89

Weight (kDa)

9.64

Isoelectric Point (pI)

26.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	14 - 317	1.7e-79	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14360 AT2G02810
fragaria_vesca	FvH4_4g31670
malus_domestica	MD07G1011400.v1.1 MD13G1076000.v1.1 MD16G1076200.v1.1
prunus_persica	Prupe.1G270800_v2.0.a1
pyrus_communis	pycom07g00950 pycom13g06690 pycom16g06620
rosa_chinensis	RchiOBHm_Chr4g0440181
rosa_laevigata	RLG00000006198
rosa_multiflora	Rmu_sc0001685.1_g000024
rosa_roxburghii	Rroxscaffold_5G00381110
rosa_rugosa	Rorug04G0325100
rosa_samantha	Rh4AG375800 Rh4BG388700 Rh4CG403100 Rh4DG382500
rosa_wichuraiana	Rw4G032160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	641
AccB1I	GGYRCC	1 cut(s)	641
AccI	GTMKAC	1 cut(s)	387
AccII	CGCG	1 cut(s)	30
AccIII	TCCGGA	1 cut(s)	721
AciI	CCGC	5 cut(s)	288, 687, 698, 759, 838
AclWI	GGATC	1 cut(s)	305
AcsI	RAATTY	2 cut(s)	60, 631
AcuI	CTGAAG	1 cut(s)	77
AfaI	GTAC	4 cut(s)	254, 379, 424, 643
AfiI	CCNNNNNNNGG	3 cut(s)	163, 293, 294
AgsI	TTSAA	3 cut(s)	310, 466, 579
AjnI	CCWGG	3 cut(s)	162, 570, 608
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AleI	CACNNNNGTG	1 cut(s)	244
AluBI	AGCT	6 cut(s)	211, 405, 474, 715, 731, 815
AluI	AGCT	6 cut(s)	211, 405, 474, 715, 731, 815
AlwI	GGATC	1 cut(s)	305
Aor13HI	TCCGGA	1 cut(s)	721
AoxI	GGCC	2 cut(s)	122, 674
ApeKI	GCWGC	4 cut(s)	68, 684, 715, 728
ApoI	RAATTY	2 cut(s)	60, 631
Asp700I	GAANNNNTTC	1 cut(s)	116
Asp718I	GGTACC	1 cut(s)	641
AspLEI	GCGC	5 cut(s)	10, 30, 239, 608, 976
AspS9I	GGNCC	3 cut(s)	122, 284, 675
AsuC2I	CCSGG	1 cut(s)	265
AsuII	TTCGAA	1 cut(s)	141
AvaII	GGWCC	1 cut(s)	284
BaeI	ACNNNNGTAYC	2 cut(s)	369, 402
BanI	GGYRCC	1 cut(s)	641
BanII	GRGCYC	1 cut(s)	24
BbsI	GAAGAC	2 cut(s)	473, 855
BbvI	GCAGC	4 cut(s)	55, 696, 702, 740
BccI	CCATC	3 cut(s)	122, 367, 545
BceAI	ACGGC	1 cut(s)	406
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	3 cut(s)	164, 572, 610
BciVI	GTATCC	2 cut(s)	457, 603
BcnI	CCSGG	1 cut(s)	265
BfaI	CTAG	3 cut(s)	219, 383, 471
BfoI	RGCGCY	2 cut(s)	609, 977
BfuI	GTATCC	2 cut(s)	457, 603
BisI	GCNGC	4 cut(s)	69, 685, 716, 729
BlsI	GCNGC	4 cut(s)	70, 686, 717, 730
Bme1390I	CCNGG	4 cut(s)	164, 265, 572, 610
Bme18I	GGWCC	1 cut(s)	284
BmgT120I	GGNCC	3 cut(s)	122, 284, 675
BmiI	GGNNCC	5 cut(s)	23, 286, 643, 677, 808
BmrFI	CCNGG	4 cut(s)	164, 265, 572, 610
BmsI	GCATC	3 cut(s)	357, 727, 861
BpiI	GAAGAC	2 cut(s)	473, 855
BpmI	CTGGAG	2 cut(s)	252, 277
Bpu10I	CCTNAGC	2 cut(s)	330, 811
Bpu14I	TTCGAA	1 cut(s)	141
BpuMI	CCSGG	1 cut(s)	265
BsaJI	CCNNGG	5 cut(s)	82, 514, 570, 609, 679
BsaWI	WCCGGW	1 cut(s)	721
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 293, 294
Bse1I	ACTGG	2 cut(s)	260, 362
BseAI	TCCGGA	1 cut(s)	721
BseBI	CCWGG	3 cut(s)	164, 572, 610
BseDI	CCNNGG	5 cut(s)	82, 514, 570, 609, 679
BseGI	GGATG	1 cut(s)	718
BseLI	CCNNNNNNNGG	3 cut(s)	163, 293, 294
BseMII	CTCAG	2 cut(s)	344, 863
BseNI	ACTGG	2 cut(s)	260, 362
BseXI	GCAGC	4 cut(s)	55, 696, 702, 740
BsgI	GTGCAG	1 cut(s)	783
Bsh1236I	CGCG	1 cut(s)	30
BshFI	GGCC	2 cut(s)	124, 676
BshNI	GGYRCC	1 cut(s)	641
BsiSI	CCGG	5 cut(s)	25, 264, 326, 438, 722
BslFI	GGGAC	1 cut(s)	749
BslI	CCNNNNNNNGG	3 cut(s)	163, 293, 294
BsmFI	GGGAC	1 cut(s)	749
BsmI	GAATGC	1 cut(s)	511
BsnI	GGCC	2 cut(s)	124, 676
Bsp119I	TTCGAA	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp13I	TCCGGA	1 cut(s)	721
Bsp143I	GATC	1 cut(s)	297
BspACI	CCGC	5 cut(s)	288, 687, 698, 759, 838
BspANI	GGCC	2 cut(s)	124, 676
BspCNI	CTCAG	2 cut(s)	343, 864
BspEI	TCCGGA	1 cut(s)	721
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	5 cut(s)	23, 286, 643, 677, 808
BspPI	GGATC	1 cut(s)	305
BspT104I	TTCGAA	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	641
BsrI	ACTGG	2 cut(s)	260, 362
BssECI	CCNNGG	5 cut(s)	82, 514, 570, 609, 679
BssMI	GATC	1 cut(s)	297
BssT1I	CCWWGG	2 cut(s)	82, 514
Bst2UI	CCWGG	3 cut(s)	164, 572, 610
Bst6I	CTCTTC	1 cut(s)	977
BstBI	TTCGAA	1 cut(s)	141
BstC8I	GCNNGC	3 cut(s)	89, 674, 713
BstDEI	CTNAG	3 cut(s)	330, 811, 872
BstDSI	CCRYGG	1 cut(s)	679
BstF5I	GGATG	1 cut(s)	718
BstFNI	CGCG	1 cut(s)	30
BstH2I	RGCGCY	2 cut(s)	609, 977
BstHHI	GCGC	5 cut(s)	10, 30, 239, 608, 976
BstKTI	GATC	1 cut(s)	300
BstMBI	GATC	1 cut(s)	297
BstMWI	GCNNNNNNNGC	3 cut(s)	121, 236, 971
BstNI	CCWGG	3 cut(s)	164, 572, 610
BstSCI	CCNGG	4 cut(s)	162, 263, 570, 608
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	4 cut(s)	55, 696, 702, 740
BstV2I	GAAGAC	2 cut(s)	473, 855
BsuI	GTATCC	2 cut(s)	457, 603
BsuRI	GGCC	2 cut(s)	124, 676
BtgI	CCRYGG	1 cut(s)	679
BtsCI	GGATG	1 cut(s)	718
BtsI	GCAGTG	1 cut(s)	905
BtsIMutI	CAGTG	2 cut(s)	369, 905
Cac8I	GCNNGC	3 cut(s)	89, 674, 713
CfoI	GCGC	5 cut(s)	10, 30, 239, 608, 976
Cfr13I	GGNCC	3 cut(s)	122, 284, 675
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	4 cut(s)	253, 378, 423, 642
CviAII	CATG	3 cut(s)	628, 655, 916
CviQI	GTAC	4 cut(s)	253, 378, 423, 642
DdeI	CTNAG	3 cut(s)	330, 811, 872
DpnI	GATC	1 cut(s)	299
DpnII	GATC	1 cut(s)	297
Eam1104I	CTCTTC	1 cut(s)	977
EarI	CTCTTC	1 cut(s)	977
Eco130I	CCWWGG	2 cut(s)	82, 514
Eco24I	GRGCYC	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	284
Eco57I	CTGAAG	1 cut(s)	77
EcoRII	CCWGG	3 cut(s)	162, 570, 608
EcoT14I	CCWWGG	2 cut(s)	82, 514
EcoT38I	GRGCYC	1 cut(s)	24
ErhI	CCWWGG	2 cut(s)	82, 514
FaeI	CATG	3 cut(s)	631, 658, 919
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	1 cut(s)	749
FatI	CATG	3 cut(s)	627, 654, 915
FauI	CCCGC	2 cut(s)	295, 845
FblI	GTMKAC	1 cut(s)	387
Fnu4HI	GCNGC	4 cut(s)	69, 685, 716, 729
FokI	GGATG	1 cut(s)	705
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	4 cut(s)	69, 685, 716, 729
FspBI	CTAG	3 cut(s)	219, 383, 471
GlaI	GCGC	5 cut(s)	9, 29, 238, 607, 975
GluI	GCNGC	4 cut(s)	69, 685, 716, 729
GsuI	CTGGAG	2 cut(s)	252, 277
HaeII	RGCGCY	2 cut(s)	609, 977
HaeIII	GGCC	2 cut(s)	124, 676
HapII	CCGG	5 cut(s)	25, 264, 326, 438, 722
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	5 cut(s)	10, 30, 239, 608, 976
Hin1II	CATG	3 cut(s)	631, 658, 919
Hin6I	GCGC	5 cut(s)	8, 28, 237, 606, 974
HinP1I	GCGC	5 cut(s)	8, 28, 237, 606, 974
HincII	GTYRAC	1 cut(s)	891
HindII	GTYRAC	1 cut(s)	891
HindIII	AAGCTT	1 cut(s)	209
HinfI	GANTC	3 cut(s)	117, 555, 575
HpaII	CCGG	5 cut(s)	25, 264, 326, 438, 722
Hpy166II	GTNNAC	4 cut(s)	108, 249, 388, 891
Hpy188III	TCNNGA	5 cut(s)	95, 157, 410, 463, 722
Hpy8I	GTNNAC	4 cut(s)	108, 249, 388, 891
Hpy99I	CGWCG	1 cut(s)	56
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	5 cut(s)	458, 587, 711, 718, 764
HpyF10VI	GCNNNNNNNGC	3 cut(s)	121, 236, 971
HpyF3I	CTNAG	3 cut(s)	330, 811, 872
HpySE526I	ACGT	1 cut(s)	251
Hsp92II	CATG	3 cut(s)	631, 658, 919
HspAI	GCGC	5 cut(s)	8, 28, 237, 606, 974
Kpn2I	TCCGGA	1 cut(s)	721
KpnI	GGTACC	1 cut(s)	645
Kzo9I	GATC	1 cut(s)	297
LmnI	GCTCC	2 cut(s)	27, 514
Lsp1109I	GCAGC	4 cut(s)	55, 696, 702, 740
LweI	GCATC	3 cut(s)	357, 727, 861
MaeI	CTAG	3 cut(s)	219, 383, 471
MaeII	ACGT	1 cut(s)	251
MalI	GATC	1 cut(s)	299
MboI	GATC	1 cut(s)	297
MboII	GAAGA	4 cut(s)	478, 734, 855, 994
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	2 cut(s)	60, 631
MmeI	TCCRAC	1 cut(s)	37
MnlI	CCTC	7 cut(s)	227, 358, 434, 551, 688, 764, 951
MroI	TCCGGA	1 cut(s)	721
MroXI	GAANNNNTTC	1 cut(s)	116
MseI	TTAA	1 cut(s)	206
MslI	CAYNNNNRTG	3 cut(s)	244, 504, 857
MspA1I	CMGCKG	1 cut(s)	687
MspI	CCGG	5 cut(s)	25, 264, 326, 438, 722
MspR9I	CCNGG	4 cut(s)	164, 265, 572, 610
Mva1269I	GAATGC	1 cut(s)	511
MvaI	CCWGG	3 cut(s)	164, 572, 610
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	3 cut(s)	121, 236, 971
NciI	CCSGG	1 cut(s)	265
NdeII	GATC	1 cut(s)	297
NlaIII	CATG	3 cut(s)	631, 658, 919
NlaIV	GGNNCC	5 cut(s)	23, 286, 643, 677, 808
NspV	TTCGAA	1 cut(s)	141
OliI	CACNNNNGTG	1 cut(s)	244
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PctI	GAATGC	1 cut(s)	511
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	3 cut(s)	117, 555, 575
PkrI	GCNGC	4 cut(s)	70, 686, 717, 730
Psp6I	CCWGG	3 cut(s)	162, 570, 608
PspGI	CCWGG	3 cut(s)	162, 570, 608
PspN4I	GGNNCC	5 cut(s)	23, 286, 643, 677, 808
PspPI	GGNCC	3 cut(s)	122, 284, 675
RsaI	GTAC	4 cut(s)	254, 379, 424, 643
RsaNI	GTAC	4 cut(s)	253, 378, 423, 642
RseI	CAYNNNNRTG	3 cut(s)	244, 504, 857
SaqAI	TTAA	1 cut(s)	206
SatI	GCNGC	4 cut(s)	69, 685, 716, 729
Sau3AI	GATC	1 cut(s)	297
Sau96I	GGNCC	3 cut(s)	122, 284, 675
ScrFI	CCNGG	4 cut(s)	164, 265, 572, 610
SduI	GDGCHC	1 cut(s)	24
SfaNI	GCATC	3 cut(s)	357, 727, 861
SfuI	TTCGAA	1 cut(s)	141
SinI	GGWCC	1 cut(s)	284
SmiMI	CAYNNNNRTG	3 cut(s)	244, 504, 857
Sse9I	AATT	2 cut(s)	60, 631
SsiI	CCGC	5 cut(s)	288, 687, 698, 759, 838
SspMI	CTAG	3 cut(s)	219, 383, 471
StyD4I	CCNGG	4 cut(s)	162, 263, 570, 608
StyI	CCWWGG	2 cut(s)	82, 514
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	2 cut(s)	141, 300
TasI	AATT	2 cut(s)	60, 631
TatI	WGTACW	1 cut(s)	422
TfiI	GAWTC	3 cut(s)	117, 555, 575
Tru1I	TTAA	1 cut(s)	206
Tru9I	TTAA	1 cut(s)	206
TscAI	CASTG	2 cut(s)	369, 905
TseI	GCWGC	4 cut(s)	68, 684, 715, 728
TspDTI	ATGAA	3 cut(s)	644, 769, 904
TspRI	CASTG	2 cut(s)	369, 905
VpaK11BI	GGWCC	1 cut(s)	284
XapI	RAATTY	2 cut(s)	60, 631
XmiI	GTMKAC	1 cut(s)	387
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	3 cut(s)	219, 383, 471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.