Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0011112

Physical Location & Seq

Genomic Coordinates Reverse (-)

54222805 .. 54224986

Gene Structure 2182 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG388700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 999 bp

ATGGAGGCTCACGGGTCGGGGCTCCGGCGTGTCATCGTCTTGGCCTTCTGCGTCGCCGGTATCTGGGCCGCTTATATCTACCAAGGTGTTCTTCAGGAAACTCTGTCCACCAAGCGGTTCGGTCCGGATGGGATTAGGTTCGAGCATCTTTCGTTCCTGAACTTGGCCCAAAATGTGGTCTGTTTAATCTGGTCATATACAATGTTGAAGATTTGGTCCAGCAGTAATGCTGGCGGTGCGCCTTTGTGGACGTACTGGAGTGCAGGGATTACTAATACGATTGGACCGGCTATGGGAATCGAAGCTTTGAAGTATATCAGCTACCCGGCCCAGGTCCTGGCCAAATCCTCAAAAATGATTCCAGTGATGCTGATGGGTACTCTAGTCTATGGCATAAGATACACCTTTCCTGAGTATGTTTGTACTCTCCTTGTTGCTGGAGGGGTATCCATGTTTGCACTCTTGAAGACTAGCTCAAAGACCATTAGCAAGTTGGCACACCCAAATGCACCTCTTGGATATGGACTATGCTTCCTTAACCTTGCTTTTGATGGATTCACAAATGCTACTCAGGATTCAATAACAGCAAGGTACCCAAAAACAAGTGCCTGGGAAATAATGTTAGGCATGAACCTATGGGGTACCATATACAACATGATCTACATGTTTGGCTGGCCGCGAGGTAGCGGATTTGAGGCAGTTCAATTCTGCAAGATGCATCCTGAAGCAGCATGGGACATTTTTCTCTATTGTCTCTGTGGCGCAGTTGGCCAGAATTTCATCTTCCTAACCATAAGCAGATTTGGTTCCCTGGCTAATACCACCATTACCACCACCCGCAAGTTTGTGAGCATTGTGGTGTCGTCATTGCTCAGTGGCAATCCCCTGTCATCAAAGCAATGGGGTTGTGTTGTCACGGTCTTCTCTGGGTTGTCGTATCAGATCTACCTCAAATGGAAGAAGTTGCAGAGACTGCAGAAGAAGAGAAAGCCAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005215 GO:0005338 GO:0005459 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009553 GO:0009555 GO:0009987 GO:0010033 GO:0012505 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0030173 GO:0030176 GO:0030968 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0032501 GO:0032502 GO:0033554 GO:0034220 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071702 GO:0071705 GO:0072334 GO:0090481 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

332

Amino Acids

36.87

Weight (kDa)

9.59

Isoelectric Point (pI)

26.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
UAA	PF08449	15 - 317	1.7e-77	UAA transporter family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14360 AT2G02810
fragaria_vesca	FvH4_4g31670
malus_domestica	MD07G1011400.v1.1 MD13G1076000.v1.1 MD16G1076200.v1.1
prunus_persica	Prupe.1G270800_v2.0.a1
pyrus_communis	pycom07g00950 pycom13g06690 pycom16g06620
rosa_chinensis	RchiOBHm_Chr4g0440181
rosa_laevigata	RLG00000006198
rosa_multiflora	Rmu_sc0001685.1_g000024
rosa_roxburghii	Rroxscaffold_5G00381110
rosa_rugosa	Rorug04G0325100
rosa_samantha	Rh4AG375800 Rh4BG388700 Rh4CG403100 Rh4DG382500
rosa_wichuraiana	Rw4G032160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	2 cut(s)	591, 641
AccB1I	GGYRCC	2 cut(s)	591, 641
AccB7I	CCANNNNNTGG	2 cut(s)	175, 337
AccII	CGCG	1 cut(s)	679
AccIII	TCCGGA	1 cut(s)	124
AciI	CCGC	6 cut(s)	69, 115, 234, 677, 687, 838
AcoI	YGGCCR	3 cut(s)	339, 674, 769
AcsI	RAATTY	1 cut(s)	775
AcuI	CTGAAG	2 cut(s)	77, 744
AfaI	GTAC	5 cut(s)	254, 379, 424, 593, 643
AfiI	CCNNNNNNNGG	7 cut(s)	63, 114, 163, 175, 293, 331, 337
AflIII	ACRYGT	1 cut(s)	663
AgsI	TTSAA	5 cut(s)	208, 310, 466, 579, 704
AjnI	CCWGG	4 cut(s)	330, 336, 608, 810
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AluBI	AGCT	3 cut(s)	305, 321, 474
AluI	AGCT	3 cut(s)	305, 321, 474
Alw26I	GTCTC	2 cut(s)	758, 964
AlwNI	CAGNNNCTG	2 cut(s)	337, 973
Aor13HI	TCCGGA	1 cut(s)	124
AoxI	GGCC	7 cut(s)	42, 66, 165, 327, 339, 674, 769
ApeKI	GCWGC	1 cut(s)	728
ApoI	RAATTY	1 cut(s)	775
Asp718I	GGTACC	2 cut(s)	591, 641
AspLEI	GCGC	2 cut(s)	241, 764
AspS9I	GGNCC	7 cut(s)	66, 122, 166, 216, 284, 328, 334
AsuC2I	CCSGG	1 cut(s)	326
AvaII	GGWCC	4 cut(s)	122, 216, 284, 334
BaeI	ACNNNNGTAYC	2 cut(s)	369, 402
BalI	TGGCCA	2 cut(s)	341, 771
BanI	GGYRCC	2 cut(s)	591, 641
BanII	GRGCYC	1 cut(s)	24
BbsI	GAAGAC	2 cut(s)	473, 913
BbvI	GCAGC	1 cut(s)	740
BccI	CCATC	3 cut(s)	122, 367, 545
BciT130I	CCWGG	4 cut(s)	332, 338, 610, 812
BciVI	GTATCC	1 cut(s)	457
BcnI	CCSGG	1 cut(s)	326
BcoDI	GTCTC	2 cut(s)	758, 964
BfaI	CTAG	2 cut(s)	383, 471
BfmI	CTRYAG	1 cut(s)	974
BfuI	GTATCC	1 cut(s)	457
BglII	AGATCT	1 cut(s)	942
BisI	GCNGC	3 cut(s)	69, 677, 729
BlsI	GCNGC	3 cut(s)	70, 678, 730
Bme1390I	CCNGG	5 cut(s)	326, 332, 338, 610, 812
Bme18I	GGWCC	4 cut(s)	122, 216, 284, 334
BmgT120I	GGNCC	7 cut(s)	66, 122, 166, 216, 284, 328, 334
BmiI	GGNNCC	4 cut(s)	23, 593, 643, 808
BmrFI	CCNGG	5 cut(s)	326, 332, 338, 610, 812
BmsI	GCATC	4 cut(s)	154, 357, 705, 727
BpiI	GAAGAC	2 cut(s)	473, 913
BpmI	CTGGAG	2 cut(s)	277, 459
BpuMI	CCSGG	1 cut(s)	326
BsaJI	CCNNGG	4 cut(s)	82, 330, 609, 810
BsaWI	WCCGGW	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	7 cut(s)	63, 114, 163, 175, 293, 331, 337
Bse118I	RCCGGY	2 cut(s)	56, 286
Bse1I	ACTGG	2 cut(s)	260, 362
Bse3DI	GCAATG	2 cut(s)	866, 905
BseAI	TCCGGA	1 cut(s)	124
BseBI	CCWGG	4 cut(s)	332, 338, 610, 812
BseDI	CCNNGG	4 cut(s)	82, 330, 609, 810
BseGI	GGATG	2 cut(s)	133, 718
BseLI	CCNNNNNNNGG	7 cut(s)	63, 114, 163, 175, 293, 331, 337
BseMI	GCAATG	2 cut(s)	866, 905
BseMII	CTCAG	3 cut(s)	402, 584, 886
BseNI	ACTGG	2 cut(s)	260, 362
BseXI	GCAGC	1 cut(s)	740
BsgI	GTGCAG	1 cut(s)	282
Bsh1236I	CGCG	1 cut(s)	679
BshFI	GGCC	7 cut(s)	44, 68, 167, 329, 341, 676, 771
BshNI	GGYRCC	2 cut(s)	591, 641
BsiSI	CCGG	5 cut(s)	25, 57, 125, 287, 326
BslFI	GGGAC	1 cut(s)	749
BslI	CCNNNNNNNGG	7 cut(s)	63, 114, 163, 175, 293, 331, 337
BsmAI	GTCTC	2 cut(s)	758, 964
BsmFI	GGGAC	1 cut(s)	749
BsnI	GGCC	7 cut(s)	44, 68, 167, 329, 341, 676, 771
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp13I	TCCGGA	1 cut(s)	124
Bsp143I	GATC	2 cut(s)	657, 942
BspACI	CCGC	6 cut(s)	69, 115, 234, 677, 687, 838
BspANI	GGCC	7 cut(s)	44, 68, 167, 329, 341, 676, 771
BspCNI	CTCAG	3 cut(s)	403, 583, 885
BspEI	TCCGGA	1 cut(s)	124
BspFNI	CGCG	1 cut(s)	679
BspLI	GGNNCC	4 cut(s)	23, 593, 643, 808
BspMAI	CTGCAG	1 cut(s)	978
BspT107I	GGYRCC	2 cut(s)	591, 641
BsrDI	GCAATG	2 cut(s)	866, 905
BsrFI	RCCGGY	2 cut(s)	56, 286
BsrI	ACTGG	2 cut(s)	260, 362
BssAI	RCCGGY	2 cut(s)	56, 286
BssECI	CCNNGG	4 cut(s)	82, 330, 609, 810
BssMI	GATC	2 cut(s)	657, 942
BssT1I	CCWWGG	1 cut(s)	82
Bst2UI	CCWGG	4 cut(s)	332, 338, 610, 812
Bst4CI	ACNGT	1 cut(s)	919
Bst6I	CTCTTC	1 cut(s)	977
BstAPI	GCANNNNNTGC	1 cut(s)	973
BstC8I	GCNNGC	2 cut(s)	232, 674
BstDEI	CTNAG	3 cut(s)	411, 570, 872
BstF5I	GGATG	2 cut(s)	133, 718
BstFNI	CGCG	1 cut(s)	679
BstHHI	GCGC	2 cut(s)	241, 764
BstKTI	GATC	2 cut(s)	660, 945
BstMAI	GTCTC	2 cut(s)	758, 964
BstMBI	GATC	2 cut(s)	657, 942
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 768, 973
BstNI	CCWGG	4 cut(s)	332, 338, 610, 812
BstNSI	RCATGY	1 cut(s)	667
BstSCI	CCNGG	5 cut(s)	324, 330, 336, 608, 810
BstSFI	CTRYAG	1 cut(s)	974
BstUI	CGCG	1 cut(s)	679
BstV1I	GCAGC	1 cut(s)	740
BstV2I	GAAGAC	2 cut(s)	473, 913
BstX2I	RGATCY	1 cut(s)	942
BstYI	RGATCY	1 cut(s)	942
BsuI	GTATCC	1 cut(s)	457
BsuRI	GGCC	7 cut(s)	44, 68, 167, 329, 341, 676, 771
BtsCI	GGATG	2 cut(s)	133, 718
BtsIMutI	CAGTG	2 cut(s)	369, 880
Cac8I	GCNNGC	2 cut(s)	232, 674
CaiI	CAGNNNCTG	2 cut(s)	337, 973
CfoI	GCGC	2 cut(s)	241, 764
Cfr10I	RCCGGY	2 cut(s)	56, 286
Cfr13I	GGNCC	7 cut(s)	66, 122, 166, 216, 284, 328, 334
CpoI	CGGWCCG	1 cut(s)	122
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	5 cut(s)	253, 378, 423, 592, 642
CspI	CGGWCCG	1 cut(s)	122
CviAII	CATG	5 cut(s)	451, 628, 655, 664, 732
CviQI	GTAC	5 cut(s)	253, 378, 423, 592, 642
DdeI	CTNAG	3 cut(s)	411, 570, 872
DpnI	GATC	2 cut(s)	659, 944
DpnII	GATC	2 cut(s)	657, 942
EaeI	YGGCCR	3 cut(s)	339, 674, 769
Eam1104I	CTCTTC	1 cut(s)	977
EarI	CTCTTC	1 cut(s)	977
Eco130I	CCWWGG	1 cut(s)	82
Eco24I	GRGCYC	1 cut(s)	24
Eco47I	GGWCC	4 cut(s)	122, 216, 284, 334
Eco57I	CTGAAG	2 cut(s)	77, 744
EcoO109I	RGGNCCY	1 cut(s)	334
EcoRII	CCWGG	4 cut(s)	330, 336, 608, 810
EcoT14I	CCWWGG	1 cut(s)	82
EcoT22I	ATGCAT	1 cut(s)	720
EcoT38I	GRGCYC	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	82
FaeI	CATG	5 cut(s)	454, 631, 658, 667, 735
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	1 cut(s)	749
FatI	CATG	5 cut(s)	450, 627, 654, 663, 731
FauI	CCCGC	1 cut(s)	845
Fnu4HI	GCNGC	3 cut(s)	69, 677, 729
FokI	GGATG	2 cut(s)	140, 705
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	3 cut(s)	69, 677, 729
FspBI	CTAG	2 cut(s)	383, 471
GlaI	GCGC	2 cut(s)	240, 763
GluI	GCNGC	3 cut(s)	69, 677, 729
GsuI	CTGGAG	2 cut(s)	277, 459
HaeIII	GGCC	7 cut(s)	44, 68, 167, 329, 341, 676, 771
HapII	CCGG	5 cut(s)	25, 57, 125, 287, 326
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	2 cut(s)	241, 764
Hin1II	CATG	5 cut(s)	454, 631, 658, 667, 735
Hin6I	GCGC	2 cut(s)	239, 762
HinP1I	GCGC	2 cut(s)	239, 762
HindIII	AAGCTT	1 cut(s)	303
HinfI	GANTC	4 cut(s)	297, 358, 555, 575
HpaII	CCGG	5 cut(s)	25, 57, 125, 287, 326
Hpy166II	GTNNAC	2 cut(s)	108, 249
Hpy188I	TCNGA	1 cut(s)	942
Hpy188III	TCNNGA	7 cut(s)	95, 125, 157, 410, 463, 572, 722
Hpy8I	GTNNAC	2 cut(s)	108, 249
Hpy99I	CGWCG	1 cut(s)	56
HpyAV	CCTTC	1 cut(s)	55
HpyCH4III	ACNGT	1 cut(s)	919
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	7 cut(s)	263, 458, 509, 711, 718, 967, 976
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 768, 973
HpyF3I	CTNAG	3 cut(s)	411, 570, 872
HpySE526I	ACGT	1 cut(s)	251
Hsp92II	CATG	5 cut(s)	454, 631, 658, 667, 735
HspAI	GCGC	2 cut(s)	239, 762
Kpn2I	TCCGGA	1 cut(s)	124
KpnI	GGTACC	2 cut(s)	595, 645
Kzo9I	GATC	2 cut(s)	657, 942
LmnI	GCTCC	1 cut(s)	27
Lsp1109I	GCAGC	1 cut(s)	740
LweI	GCATC	4 cut(s)	154, 357, 705, 727
MaeI	CTAG	2 cut(s)	383, 471
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	913
MalI	GATC	2 cut(s)	659, 944
MboI	GATC	2 cut(s)	657, 942
MboII	GAAGA	8 cut(s)	83, 220, 478, 775, 913, 970, 991, 994
MflI	RGATCY	1 cut(s)	942
MhlI	GDGCHC	1 cut(s)	24
MlsI	TGGCCA	2 cut(s)	341, 771
MluCI	AATT	3 cut(s)	704, 775, 994
MluNI	TGGCCA	2 cut(s)	341, 771
MnlI	CCTC	6 cut(s)	358, 434, 522, 674, 688, 959
Mox20I	TGGCCA	2 cut(s)	341, 771
Mph1103I	ATGCAT	1 cut(s)	720
MroI	TCCGGA	1 cut(s)	124
MscI	TGGCCA	2 cut(s)	341, 771
MseI	TTAA	3 cut(s)	185, 537, 997
MslI	CAYNNNNRTG	2 cut(s)	504, 857
Msp20I	TGGCCA	2 cut(s)	341, 771
MspI	CCGG	5 cut(s)	25, 57, 125, 287, 326
MspR9I	CCNGG	5 cut(s)	326, 332, 338, 610, 812
MvaI	CCWGG	4 cut(s)	332, 338, 610, 812
MvnI	CGCG	1 cut(s)	679
MwoI	GCNNNNNNNGC	3 cut(s)	236, 768, 973
NciI	CCSGG	1 cut(s)	326
NdeII	GATC	2 cut(s)	657, 942
NlaIII	CATG	5 cut(s)	454, 631, 658, 667, 735
NlaIV	GGNNCC	4 cut(s)	23, 593, 643, 808
NmuCI	GTSAC	1 cut(s)	913
NsiI	ATGCAT	1 cut(s)	720
NspI	RCATGY	1 cut(s)	667
PciI	ACATGT	1 cut(s)	663
PfeI	GAWTC	4 cut(s)	297, 358, 555, 575
PflMI	CCANNNNNTGG	2 cut(s)	175, 337
PkrI	GCNGC	3 cut(s)	70, 678, 730
PpuMI	RGGWCCY	1 cut(s)	334
PscI	ACATGT	1 cut(s)	663
Psp5II	RGGWCCY	1 cut(s)	334
Psp6I	CCWGG	4 cut(s)	330, 336, 608, 810
PspGI	CCWGG	4 cut(s)	330, 336, 608, 810
PspN4I	GGNNCC	4 cut(s)	23, 593, 643, 808
PspPI	GGNCC	7 cut(s)	66, 122, 166, 216, 284, 328, 334
PspPPI	RGGWCCY	1 cut(s)	334
PstI	CTGCAG	1 cut(s)	978
PstNI	CAGNNNCTG	2 cut(s)	337, 973
PsuI	RGATCY	1 cut(s)	942
RsaI	GTAC	5 cut(s)	254, 379, 424, 593, 643
RsaNI	GTAC	5 cut(s)	253, 378, 423, 592, 642
RseI	CAYNNNNRTG	2 cut(s)	504, 857
Rsr2I	CGGWCCG	1 cut(s)	122
RsrII	CGGWCCG	1 cut(s)	122
SaqAI	TTAA	3 cut(s)	185, 537, 997
SatI	GCNGC	3 cut(s)	69, 677, 729
Sau3AI	GATC	2 cut(s)	657, 942
Sau96I	GGNCC	7 cut(s)	66, 122, 166, 216, 284, 328, 334
ScrFI	CCNGG	5 cut(s)	326, 332, 338, 610, 812
SduI	GDGCHC	1 cut(s)	24
SfaNI	GCATC	4 cut(s)	154, 357, 705, 727
SfcI	CTRYAG	1 cut(s)	974
SinI	GGWCC	4 cut(s)	122, 216, 284, 334
SmiMI	CAYNNNNRTG	2 cut(s)	504, 857
Sse9I	AATT	3 cut(s)	704, 775, 994
SsiI	CCGC	6 cut(s)	69, 115, 234, 677, 687, 838
SspMI	CTAG	2 cut(s)	383, 471
StyD4I	CCNGG	5 cut(s)	324, 330, 336, 608, 810
StyI	CCWWGG	1 cut(s)	82
TaaI	ACNGT	1 cut(s)	919
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	2 cut(s)	141, 300
TaqII	GACCGA	1 cut(s)	110
TasI	AATT	3 cut(s)	704, 775, 994
TatI	WGTACW	1 cut(s)	422
TauI	GCSGC	2 cut(s)	71, 679
TfiI	GAWTC	4 cut(s)	297, 358, 555, 575
Tru1I	TTAA	3 cut(s)	185, 537, 997
Tru9I	TTAA	3 cut(s)	185, 537, 997
TscAI	CASTG	2 cut(s)	369, 880
TseFI	GTSAC	1 cut(s)	913
TseI	GCWGC	1 cut(s)	728
Tsp45I	GTSAC	1 cut(s)	913
TspDTI	ATGAA	2 cut(s)	644, 769
TspRI	CASTG	2 cut(s)	369, 880
Van91I	CCANNNNNTGG	2 cut(s)	175, 337
VpaK11BI	GGWCC	4 cut(s)	122, 216, 284, 334
XapI	RAATTY	1 cut(s)	775
XceI	RCATGY	1 cut(s)	667
XcmI	CCANNNNNNNNNTGG	1 cut(s)	490
XspI	CTAG	2 cut(s)	383, 471
Zsp2I	ATGCAT	1 cut(s)	720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.