Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0011112

Physical Location & Seq

Genomic Coordinates Reverse (-)

4401485 .. 4403754

Gene Structure 2270 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g06690.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 966 bp

ATGGAAGCGCATGGGTCGGGGCTCCGGCGCGTGTTGGTGTTCGGCTTCTGCGTCTTTGGAATTTGGGCTGCTTATATCTACCAAGGCGTGCTTCAGGAAACTCTGTCCACGAAGCGATTCGGGCCAGATGGGGATAGGTTCGAACACCTTGCGTTCCTGAACCTAGCTCAGAATGTGCTTTGGTCTAGCAGTAATGCTGGAGGCGCACCTATGTGGACGTACTGGAGTGCCGGGATTACTAATACGATTGGACCCGCTATGGGGATCGAAGCGTTGAAGTATATCAGTTATCCTGCTCAGGTCTTGGCAAAGTCCTCAAAAATGATACCAGTGATGCTGATGGGTACTCTAGTCTACGGCAAAAGATACAGCTTTCCTGAATATGTTTGTACTCTCCTTGTTGCCGGAGGGGTATCCATATTTGCACTCTTGAAGACTAGCTCAAAGACTATTAGCAAGTTGGCACACCCGAATGCTCCCCTTGGATATGGACTATGTTTTCTCAACCTCGCTTTTGATGGATTCACAAATGCCACCCAGGATTCAATAACTGCAAGGTATCCAAAAACAAGCGCCTGGGAAATAATGTTGGGCATGAATTTATGGGGTACCATATACAACATGATTTACATGTTTGGCTGGCCGCATGGCAGCGGATTTGAGGCGGTTCAGTTCTGCAAGCTGCATCCGGAAGCAGCTTGGGACATTCTTCTCTATTGTCTCTGCGGTGCAGTTGGGCAGAACTTCATTTTCCTAACCATAAGTCGTTTTGGTTCCTTAGCTAACACCACCATTACCACTACCCGCAAGTTTGTAAGCATCGTGGTGTCTTCGGTGCTGAGTGGCAATCCCCTGTCAACAAAGCAGTGGGGGTCTGTTTTCATGGTGTTTTCTGGGTTGTCATATCACATCTACCACAAGTGGAGGAAATCCCAGAGAGCGCCGAAGAAGAGAAAGCCAATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000139 GO:0003674 GO:0005215 GO:0005338 GO:0005459 GO:0005460 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0005794 GO:0006810 GO:0006811 GO:0006820 GO:0006950 GO:0006986 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008509 GO:0008514 GO:0009553 GO:0009555 GO:0009987 GO:0010033 GO:0012505 GO:0015075 GO:0015165 GO:0015711 GO:0015780 GO:0015786 GO:0015931 GO:0015932 GO:0016020 GO:0016021 GO:0022857 GO:0023052 GO:0030173 GO:0030176 GO:0030968 GO:0031090 GO:0031224 GO:0031227 GO:0031228 GO:0031300 GO:0031301 GO:0031984 GO:0032501 GO:0032502 GO:0033554 GO:0034220 GO:0034620 GO:0034976 GO:0035966 GO:0035967 GO:0042175 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0048229 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0065007 GO:0070887 GO:0071310 GO:0071702 GO:0071705 GO:0072334 GO:0090481 GO:0098588 GO:0098656 GO:0098791 GO:0098827 GO:1901264 GO:1901505

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

UAA

Protein Analysis

322

Amino Acids

35.59

Weight (kDa)

9.6

Isoelectric Point (pI)

28.47

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011112)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G14360 AT2G02810
fragaria_vesca	FvH4_4g31670
malus_domestica	MD07G1011400.v1.1 MD13G1076000.v1.1 MD16G1076200.v1.1
prunus_persica	Prupe.1G270800_v2.0.a1
pyrus_communis	pycom07g00950 pycom13g06690 pycom16g06620
rosa_chinensis	RchiOBHm_Chr4g0440181
rosa_laevigata	RLG00000006198
rosa_multiflora	Rmu_sc0001685.1_g000024
rosa_roxburghii	Rroxscaffold_5G00381110
rosa_rugosa	Rorug04G0325100
rosa_samantha	Rh4AG375800 Rh4BG388700 Rh4CG403100 Rh4DG382500
rosa_wichuraiana	Rw4G032160

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	608
AccB1I	GGYRCC	1 cut(s)	608
AccI	GTMKAC	1 cut(s)	354
AccII	CGCG	1 cut(s)	30
AccIII	TCCGGA	1 cut(s)	688
AciI	CCGC	6 cut(s)	255, 644, 654, 665, 726, 805
AclWI	GGATC	1 cut(s)	272
AcoI	YGGCCR	1 cut(s)	641
AcsI	RAATTY	2 cut(s)	60, 598
AcuI	CTGAAG	1 cut(s)	77
AfaI	GTAC	4 cut(s)	221, 346, 391, 610
AfiI	CCNNNNNNNGG	2 cut(s)	260, 261
AflIII	ACRYGT	1 cut(s)	630
AgsI	TTSAA	3 cut(s)	277, 433, 546
AjnI	CCWGG	2 cut(s)	537, 575
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AleI	CACNNNNGTG	1 cut(s)	211
AluBI	AGCT	6 cut(s)	167, 372, 441, 682, 698, 782
AluI	AGCT	6 cut(s)	167, 372, 441, 682, 698, 782
Alw26I	GTCTC	1 cut(s)	725
AlwI	GGATC	1 cut(s)	272
Aor13HI	TCCGGA	1 cut(s)	688
AoxI	GGCC	2 cut(s)	122, 641
ApeKI	GCWGC	4 cut(s)	68, 651, 682, 695
ApoI	RAATTY	2 cut(s)	60, 598
Asp700I	GAANNNNTTC	1 cut(s)	116
Asp718I	GGTACC	1 cut(s)	608
AspLEI	GCGC	5 cut(s)	10, 30, 206, 575, 943
AspS9I	GGNCC	2 cut(s)	122, 251
AsuC2I	CCSGG	1 cut(s)	232
AsuII	TTCGAA	1 cut(s)	141
AvaII	GGWCC	1 cut(s)	251
BaeI	ACNNNNGTAYC	2 cut(s)	336, 369
BanI	GGYRCC	1 cut(s)	608
BanII	GRGCYC	1 cut(s)	24
BbsI	GAAGAC	2 cut(s)	440, 822
BbvI	GCAGC	4 cut(s)	55, 663, 669, 707
BccI	CCATC	3 cut(s)	122, 334, 512
BceAI	ACGGC	1 cut(s)	373
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	2 cut(s)	539, 577
BciVI	GTATCC	2 cut(s)	424, 570
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	1 cut(s)	725
BfaI	CTAG	4 cut(s)	164, 186, 350, 438
BfoI	RGCGCY	2 cut(s)	576, 944
BfuI	GTATCC	2 cut(s)	424, 570
BisI	GCNGC	5 cut(s)	69, 644, 652, 683, 696
BlsI	GCNGC	5 cut(s)	70, 645, 653, 684, 697
Bme1390I	CCNGG	3 cut(s)	232, 539, 577
Bme18I	GGWCC	1 cut(s)	251
BmgT120I	GGNCC	2 cut(s)	122, 251
BmiI	GGNNCC	4 cut(s)	23, 253, 610, 775
BmrFI	CCNGG	3 cut(s)	232, 539, 577
BmsI	GCATC	3 cut(s)	324, 694, 828
BpiI	GAAGAC	2 cut(s)	440, 822
BpmI	CTGGAG	2 cut(s)	219, 244
Bpu10I	CCTNAGC	2 cut(s)	297, 778
Bpu14I	TTCGAA	1 cut(s)	141
BpuMI	CCSGG	1 cut(s)	232
BsaJI	CCNNGG	4 cut(s)	82, 481, 537, 576
BsaWI	WCCGGW	1 cut(s)	688
Bsc4I	CCNNNNNNNGG	2 cut(s)	260, 261
Bse1I	ACTGG	2 cut(s)	227, 329
BseAI	TCCGGA	1 cut(s)	688
BseBI	CCWGG	2 cut(s)	539, 577
BseDI	CCNNGG	4 cut(s)	82, 481, 537, 576
BseGI	GGATG	1 cut(s)	685
BseLI	CCNNNNNNNGG	2 cut(s)	260, 261
BseMII	CTCAG	3 cut(s)	182, 311, 830
BseNI	ACTGG	2 cut(s)	227, 329
BseXI	GCAGC	4 cut(s)	55, 663, 669, 707
BsgI	GTGCAG	1 cut(s)	750
Bsh1236I	CGCG	1 cut(s)	30
BshFI	GGCC	2 cut(s)	124, 643
BshNI	GGYRCC	1 cut(s)	608
BsiSI	CCGG	4 cut(s)	25, 231, 405, 689
BslFI	GGGAC	1 cut(s)	716
BslI	CCNNNNNNNGG	2 cut(s)	260, 261
BsmAI	GTCTC	1 cut(s)	725
BsmFI	GGGAC	1 cut(s)	716
BsmI	GAATGC	1 cut(s)	478
BsnI	GGCC	2 cut(s)	124, 643
Bsp119I	TTCGAA	1 cut(s)	141
Bsp1286I	GDGCHC	1 cut(s)	24
Bsp13I	TCCGGA	1 cut(s)	688
Bsp143I	GATC	1 cut(s)	264
BspACI	CCGC	6 cut(s)	255, 644, 654, 665, 726, 805
BspANI	GGCC	2 cut(s)	124, 643
BspCNI	CTCAG	3 cut(s)	181, 310, 831
BspEI	TCCGGA	1 cut(s)	688
BspFNI	CGCG	1 cut(s)	30
BspLI	GGNNCC	4 cut(s)	23, 253, 610, 775
BspPI	GGATC	1 cut(s)	272
BspT104I	TTCGAA	1 cut(s)	141
BspT107I	GGYRCC	1 cut(s)	608
BsrI	ACTGG	2 cut(s)	227, 329
BssECI	CCNNGG	4 cut(s)	82, 481, 537, 576
BssMI	GATC	1 cut(s)	264
BssT1I	CCWWGG	2 cut(s)	82, 481
Bst2UI	CCWGG	2 cut(s)	539, 577
Bst6I	CTCTTC	1 cut(s)	944
BstBI	TTCGAA	1 cut(s)	141
BstC8I	GCNNGC	3 cut(s)	89, 641, 680
BstDEI	CTNAG	4 cut(s)	168, 297, 778, 839
BstF5I	GGATG	1 cut(s)	685
BstFNI	CGCG	1 cut(s)	30
BstH2I	RGCGCY	2 cut(s)	576, 944
BstHHI	GCGC	5 cut(s)	10, 30, 206, 575, 943
BstKTI	GATC	1 cut(s)	267
BstMAI	GTCTC	1 cut(s)	725
BstMBI	GATC	1 cut(s)	264
BstMWI	GCNNNNNNNGC	2 cut(s)	121, 203
BstNI	CCWGG	2 cut(s)	539, 577
BstNSI	RCATGY	1 cut(s)	634
BstSCI	CCNGG	3 cut(s)	230, 537, 575
BstUI	CGCG	1 cut(s)	30
BstV1I	GCAGC	4 cut(s)	55, 663, 669, 707
BstV2I	GAAGAC	2 cut(s)	440, 822
BsuI	GTATCC	2 cut(s)	424, 570
BsuRI	GGCC	2 cut(s)	124, 643
BtsCI	GGATG	1 cut(s)	685
BtsI	GCAGTG	1 cut(s)	872
BtsIMutI	CAGTG	2 cut(s)	336, 872
Cac8I	GCNNGC	3 cut(s)	89, 641, 680
CfoI	GCGC	5 cut(s)	10, 30, 206, 575, 943
Cfr13I	GGNCC	2 cut(s)	122, 251
CseI	GACGC	1 cut(s)	40
Csp6I	GTAC	4 cut(s)	220, 345, 390, 609
CviAII	CATG	6 cut(s)	11, 595, 622, 631, 647, 883
CviQI	GTAC	4 cut(s)	220, 345, 390, 609
DdeI	CTNAG	4 cut(s)	168, 297, 778, 839
DpnI	GATC	1 cut(s)	266
DpnII	GATC	1 cut(s)	264
EaeI	YGGCCR	1 cut(s)	641
Eam1104I	CTCTTC	1 cut(s)	944
EarI	CTCTTC	1 cut(s)	944
Eco130I	CCWWGG	2 cut(s)	82, 481
Eco24I	GRGCYC	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	251
Eco57I	CTGAAG	1 cut(s)	77
EcoRII	CCWGG	2 cut(s)	537, 575
EcoT14I	CCWWGG	2 cut(s)	82, 481
EcoT38I	GRGCYC	1 cut(s)	24
ErhI	CCWWGG	2 cut(s)	82, 481
FaeI	CATG	6 cut(s)	14, 598, 625, 634, 650, 886
FalI	AAGNNNNNCTT	2 cut(s)	75, 107
FaqI	GGGAC	1 cut(s)	716
FatI	CATG	6 cut(s)	10, 594, 621, 630, 646, 882
FauI	CCCGC	2 cut(s)	262, 812
FblI	GTMKAC	1 cut(s)	354
Fnu4HI	GCNGC	5 cut(s)	69, 644, 652, 683, 696
FokI	GGATG	1 cut(s)	672
FriOI	GRGCYC	1 cut(s)	24
Fsp4HI	GCNGC	5 cut(s)	69, 644, 652, 683, 696
FspBI	CTAG	4 cut(s)	164, 186, 350, 438
GlaI	GCGC	5 cut(s)	9, 29, 205, 574, 942
GluI	GCNGC	5 cut(s)	69, 644, 652, 683, 696
GsuI	CTGGAG	2 cut(s)	219, 244
HaeII	RGCGCY	2 cut(s)	576, 944
HaeIII	GGCC	2 cut(s)	124, 643
HapII	CCGG	4 cut(s)	25, 231, 405, 689
HgaI	GACGC	1 cut(s)	40
HhaI	GCGC	5 cut(s)	10, 30, 206, 575, 943
Hin1II	CATG	6 cut(s)	14, 598, 625, 634, 650, 886
Hin6I	GCGC	5 cut(s)	8, 28, 204, 573, 941
HinP1I	GCGC	5 cut(s)	8, 28, 204, 573, 941
HincII	GTYRAC	1 cut(s)	858
HindII	GTYRAC	1 cut(s)	858
HinfI	GANTC	3 cut(s)	117, 522, 542
HpaII	CCGG	4 cut(s)	25, 231, 405, 689
Hpy166II	GTNNAC	4 cut(s)	108, 216, 355, 858
Hpy188I	TCNGA	1 cut(s)	171
Hpy188III	TCNNGA	5 cut(s)	95, 157, 377, 430, 689
Hpy8I	GTNNAC	4 cut(s)	108, 216, 355, 858
HpyCH4IV	ACGT	1 cut(s)	218
HpyCH4V	TGCA	5 cut(s)	425, 554, 678, 685, 731
HpyF10VI	GCNNNNNNNGC	2 cut(s)	121, 203
HpyF3I	CTNAG	4 cut(s)	168, 297, 778, 839
HpySE526I	ACGT	1 cut(s)	218
Hsp92II	CATG	6 cut(s)	14, 598, 625, 634, 650, 886
HspAI	GCGC	5 cut(s)	8, 28, 204, 573, 941
Kpn2I	TCCGGA	1 cut(s)	688
KpnI	GGTACC	1 cut(s)	612
Kzo9I	GATC	1 cut(s)	264
LmnI	GCTCC	2 cut(s)	27, 481
Lsp1109I	GCAGC	4 cut(s)	55, 663, 669, 707
LweI	GCATC	3 cut(s)	324, 694, 828
MaeI	CTAG	4 cut(s)	164, 186, 350, 438
MaeII	ACGT	1 cut(s)	218
MalI	GATC	1 cut(s)	266
MboI	GATC	1 cut(s)	264
MboII	GAAGA	5 cut(s)	445, 701, 822, 958, 961
MhlI	GDGCHC	1 cut(s)	24
MluCI	AATT	2 cut(s)	60, 598
MnlI	CCTC	6 cut(s)	194, 325, 401, 518, 655, 918
MroI	TCCGGA	1 cut(s)	688
MroXI	GAANNNNTTC	1 cut(s)	116
MslI	CAYNNNNRTG	3 cut(s)	211, 471, 824
MspA1I	CMGCKG	1 cut(s)	654
MspI	CCGG	4 cut(s)	25, 231, 405, 689
MspR9I	CCNGG	3 cut(s)	232, 539, 577
Mva1269I	GAATGC	1 cut(s)	478
MvaI	CCWGG	2 cut(s)	539, 577
MvnI	CGCG	1 cut(s)	30
MwoI	GCNNNNNNNGC	2 cut(s)	121, 203
NciI	CCSGG	1 cut(s)	232
NdeII	GATC	1 cut(s)	264
NlaIII	CATG	6 cut(s)	14, 598, 625, 634, 650, 886
NlaIV	GGNNCC	4 cut(s)	23, 253, 610, 775
NspI	RCATGY	1 cut(s)	634
NspV	TTCGAA	1 cut(s)	141
OliI	CACNNNNGTG	1 cut(s)	211
PciI	ACATGT	1 cut(s)	630
PcsI	WCGNNNNNNNCGW	1 cut(s)	48
PctI	GAATGC	1 cut(s)	478
PdmI	GAANNNNTTC	1 cut(s)	116
PfeI	GAWTC	3 cut(s)	117, 522, 542
PkrI	GCNGC	5 cut(s)	70, 645, 653, 684, 697
PscI	ACATGT	1 cut(s)	630
Psp6I	CCWGG	2 cut(s)	537, 575
PspGI	CCWGG	2 cut(s)	537, 575
PspN4I	GGNNCC	4 cut(s)	23, 253, 610, 775
PspPI	GGNCC	2 cut(s)	122, 251
RsaI	GTAC	4 cut(s)	221, 346, 391, 610
RsaNI	GTAC	4 cut(s)	220, 345, 390, 609
RseI	CAYNNNNRTG	3 cut(s)	211, 471, 824
SatI	GCNGC	5 cut(s)	69, 644, 652, 683, 696
Sau3AI	GATC	1 cut(s)	264
Sau96I	GGNCC	2 cut(s)	122, 251
ScrFI	CCNGG	3 cut(s)	232, 539, 577
SduI	GDGCHC	1 cut(s)	24
SfaNI	GCATC	3 cut(s)	324, 694, 828
SfuI	TTCGAA	1 cut(s)	141
SinI	GGWCC	1 cut(s)	251
SmiMI	CAYNNNNRTG	3 cut(s)	211, 471, 824
Sse9I	AATT	2 cut(s)	60, 598
SsiI	CCGC	6 cut(s)	255, 644, 654, 665, 726, 805
SspMI	CTAG	4 cut(s)	164, 186, 350, 438
StyD4I	CCNGG	3 cut(s)	230, 537, 575
StyI	CCWWGG	2 cut(s)	82, 481
TaiI	ACGT	1 cut(s)	221
TaqI	TCGA	2 cut(s)	141, 267
TasI	AATT	2 cut(s)	60, 598
TatI	WGTACW	1 cut(s)	389
TauI	GCSGC	1 cut(s)	646
TfiI	GAWTC	3 cut(s)	117, 522, 542
TscAI	CASTG	2 cut(s)	336, 872
TseI	GCWGC	4 cut(s)	68, 651, 682, 695
TspDTI	ATGAA	3 cut(s)	611, 736, 871
TspRI	CASTG	2 cut(s)	336, 872
VpaK11BI	GGWCC	1 cut(s)	251
XapI	RAATTY	2 cut(s)	60, 598
XceI	RCATGY	1 cut(s)	634
XmiI	GTMKAC	1 cut(s)	354
XmnI	GAANNNNTTC	1 cut(s)	116
XspI	CTAG	4 cut(s)	164, 186, 350, 438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.