Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0020399

Physical Location & Seq

Genomic Coordinates Forward (+)

7615942 .. 7616634

Gene Structure 693 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1078900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 213 bp

ATGTGCTGTCTGATCAGTTCGCAAATTTCTGCAGTAAACTGCAGGATATTTGGCTACATTTTTTCATTTAGTGGTGTATTATGCCAAGAGGAAGCTATTGTAAAAGCCAAGGAGAACTTGAAGTACTTGGAAGAAGAGCTAAAGGGAAAGAAATTCTTTGGCGGAGAGAAACTTGGATTTGCGGATATTGCACTTGGATGGCTCGCACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009404 GO:0009407 GO:0009408 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016740 GO:0016765 GO:0019748 GO:0033993 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0097305 GO:0098754 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

71

Amino Acids

7.79

Weight (kDa)

6.54

Isoelectric Point (pI)

26.23

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_C	PF00043	29 - 65	1.8e-07	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0020399)

Species	Orthologous Gene IDs
malus_domestica	MD07G1078900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0339911 RchiOBHm_Chr6g0252711
rosa_multiflora	Rmu_sc0035963.1_g000001 Rmu_sc0035964.1_g000001
rosa_rugosa	Rorug01G0138400.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	162, 182
AcsI	RAATTY	2 cut(s)	24, 152
AfaI	GTAC	1 cut(s)	125
AgsI	TTSAA	1 cut(s)	121
AluBI	AGCT	2 cut(s)	95, 139
AluI	AGCT	2 cut(s)	95, 139
ApoI	RAATTY	2 cut(s)	24, 152
BccI	CCATC	1 cut(s)	192
BclI	TGATCA	1 cut(s)	12
BfmI	CTRYAG	2 cut(s)	30, 40
BmcAI	AGTACT	1 cut(s)	125
BsaJI	CCNNGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	108
BseGI	GGATG	1 cut(s)	203
Bsp143I	GATC	1 cut(s)	12
BspACI	CCGC	2 cut(s)	162, 182
BspMAI	CTGCAG	2 cut(s)	34, 44
BspQI	GCTCTTC	1 cut(s)	129
BssECI	CCNNGG	1 cut(s)	108
BssMI	GATC	1 cut(s)	12
BssT1I	CCWWGG	1 cut(s)	108
Bst6I	CTCTTC	1 cut(s)	129
BstC8I	GCNNGC	1 cut(s)	204
BstF5I	GGATG	1 cut(s)	203
BstKTI	GATC	1 cut(s)	15
BstMBI	GATC	1 cut(s)	12
BstMWI	GCNNNNNNNGC	1 cut(s)	188
BstSFI	CTRYAG	2 cut(s)	30, 40
BtsCI	GGATG	1 cut(s)	203
Cac8I	GCNNGC	1 cut(s)	204
Csp6I	GTAC	1 cut(s)	124
CviJI	RGCY	5 cut(s)	54, 95, 107, 139, 202
CviKI_1	RGCY	5 cut(s)	54, 95, 107, 139, 202
CviQI	GTAC	1 cut(s)	124
DpnI	GATC	1 cut(s)	14
DpnII	GATC	1 cut(s)	12
Eam1104I	CTCTTC	1 cut(s)	129
EarI	CTCTTC	1 cut(s)	129
EciI	GGCGGA	1 cut(s)	177
Eco130I	CCWWGG	1 cut(s)	108
EcoT14I	CCWWGG	1 cut(s)	108
ErhI	CCWWGG	1 cut(s)	108
FaiI	YATR	1 cut(s)	82
FalI	AAGNNNNNCTT	4 cut(s)	101, 133, 140, 172
FbaI	TGATCA	1 cut(s)	12
Hpy166II	GTNNAC	1 cut(s)	37
Hpy188I	TCNGA	1 cut(s)	12
Hpy8I	GTNNAC	1 cut(s)	37
HpyCH4V	TGCA	3 cut(s)	32, 42, 191
HpyF10VI	GCNNNNNNNGC	1 cut(s)	188
Ksp22I	TGATCA	1 cut(s)	12
Kzo9I	GATC	1 cut(s)	12
LguI	GCTCTTC	1 cut(s)	129
LpnPI	CCDG	1 cut(s)	28
MalI	GATC	1 cut(s)	14
MboI	GATC	1 cut(s)	12
MboII	GAAGA	2 cut(s)	143, 146
MluCI	AATT	2 cut(s)	24, 152
MnlI	CCTC	1 cut(s)	82
MslI	CAYNNNNRTG	1 cut(s)	196
MwoI	GCNNNNNNNGC	1 cut(s)	188
NdeII	GATC	1 cut(s)	12
PciSI	GCTCTTC	1 cut(s)	129
PsrI	GAACNNNNNNTAC	2 cut(s)	107, 139
PstI	CTGCAG	2 cut(s)	34, 44
RsaI	GTAC	1 cut(s)	125
RsaNI	GTAC	1 cut(s)	124
RseI	CAYNNNNRTG	1 cut(s)	196
SapI	GCTCTTC	1 cut(s)	129
Sau3AI	GATC	1 cut(s)	12
ScaI	AGTACT	1 cut(s)	125
SetI	ASST	2 cut(s)	97, 141
SfcI	CTRYAG	2 cut(s)	30, 40
SgeI	CNNG	7 cut(s)	55, 98, 121, 130, 139, 185, 206
SmiMI	CAYNNNNRTG	1 cut(s)	196
Sse9I	AATT	2 cut(s)	24, 152
SsiI	CCGC	2 cut(s)	162, 182
StyI	CCWWGG	1 cut(s)	108
TasI	AATT	2 cut(s)	24, 152
TatI	WGTACW	1 cut(s)	123
TspDTI	ATGAA	1 cut(s)	54
XapI	RAATTY	2 cut(s)	24, 152
ZrmI	AGTACT	1 cut(s)	125

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.