Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0020399

Physical Location & Seq

Genomic Coordinates Reverse (-)

31408873 .. 31409217

Gene Structure 345 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56674

Sequence Viewer

CDS Protein Promoter (2k)

Length: 186 bp

ATGACAAGCTCAAGTTTCTTAGTTGAAGGGAAAGAGCAAGAGGAAGCTATTGTGAAAGCAAAGGAGAACTTGAAGTATTTGGAAGAAGAGCTAAAGGGAAAGAAATTCTTTGGGCGAGAGCAAATTGGATTTGCAGATATTGCGCTCAGATGGCTTGCACACCATGACACGTGTCTGAAGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009404 GO:0009407 GO:0009408 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016740 GO:0016765 GO:0019748 GO:0033993 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0097305 GO:0098754 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

61

Amino Acids

7.1

Weight (kDa)

6.73

Isoelectric Point (pI)

48.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GST_C	PF00043	11 - 49	1.5e-06	Glutathione S-transferase, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

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Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0020399)

Species	Orthologous Gene IDs
malus_domestica	MD07G1078900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0339911 RchiOBHm_Chr6g0252711
rosa_multiflora	Rmu_sc0035963.1_g000001 Rmu_sc0035964.1_g000001
rosa_rugosa	Rorug01G0138400.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	104
AcvI	CACGTG	1 cut(s)	171
AflIII	ACRYGT	2 cut(s)	168, 170
AgsI	TTSAA	2 cut(s)	26, 73
AluBI	AGCT	3 cut(s)	9, 47, 91
AluI	AGCT	3 cut(s)	9, 47, 91
ApoI	RAATTY	1 cut(s)	104
AspLEI	GCGC	1 cut(s)	145
BbrPI	CACGTG	1 cut(s)	171
BccI	CCATC	1 cut(s)	144
BoxI	GACNNNNGTC	1 cut(s)	171
BsaAI	YACGTR	1 cut(s)	171
BseMII	CTCAG	1 cut(s)	160
BspCNI	CTCAG	1 cut(s)	159
BspQI	GCTCTTC	1 cut(s)	81
Bst6I	CTCTTC	2 cut(s)	81, 173
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstBAI	YACGTR	1 cut(s)	171
BstC8I	GCNNGC	1 cut(s)	156
BstDEI	CTNAG	2 cut(s)	19, 146
BstHHI	GCGC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 151
BstPAI	GACNNNNGTC	1 cut(s)	171
Cac8I	GCNNGC	1 cut(s)	156
CfoI	GCGC	1 cut(s)	145
CviAII	CATG	1 cut(s)	164
CviJI	RGCY	4 cut(s)	9, 47, 91, 154
CviKI_1	RGCY	4 cut(s)	9, 47, 91, 154
DdeI	CTNAG	2 cut(s)	19, 146
Eam1104I	CTCTTC	2 cut(s)	81, 173
EarI	CTCTTC	2 cut(s)	81, 173
Eco72I	CACGTG	1 cut(s)	171
FaeI	CATG	1 cut(s)	167
FaiI	YATR	1 cut(s)	165
FalI	AAGNNNNNCTT	4 cut(s)	53, 85, 92, 124
FatI	CATG	1 cut(s)	163
GlaI	GCGC	1 cut(s)	144
HhaI	GCGC	1 cut(s)	145
Hin1II	CATG	1 cut(s)	167
Hin6I	GCGC	1 cut(s)	143
HinP1I	GCGC	1 cut(s)	143
Hpy188I	TCNGA	2 cut(s)	149, 177
HpyAV	CCTTC	1 cut(s)	20
HpyCH4IV	ACGT	1 cut(s)	170
HpyCH4V	TGCA	2 cut(s)	134, 158
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 151
HpyF3I	CTNAG	2 cut(s)	19, 146
HpySE526I	ACGT	1 cut(s)	170
Hsp92II	CATG	1 cut(s)	167
HspAI	GCGC	1 cut(s)	143
LguI	GCTCTTC	1 cut(s)	81
MaeII	ACGT	1 cut(s)	170
MboII	GAAGA	2 cut(s)	95, 98
MluCI	AATT	2 cut(s)	104, 123
MnlI	CCTC	2 cut(s)	34, 174
MwoI	GCNNNNNNNGC	2 cut(s)	140, 151
NlaIII	CATG	1 cut(s)	167
PciSI	GCTCTTC	1 cut(s)	81
PmaCI	CACGTG	1 cut(s)	171
PmlI	CACGTG	1 cut(s)	171
Ppu21I	YACGTR	1 cut(s)	171
PshAI	GACNNNNGTC	1 cut(s)	171
PspCI	CACGTG	1 cut(s)	171
SapI	GCTCTTC	1 cut(s)	81
SetI	ASST	5 cut(s)	11, 49, 93, 173, 185
SgeI	CNNG	8 cut(s)	18, 24, 50, 82, 128, 167, 176, 181
SmlI	CTYRAG	1 cut(s)	10
SmoI	CTYRAG	1 cut(s)	10
Sse9I	AATT	2 cut(s)	104, 123
TaiI	ACGT	1 cut(s)	173
TasI	AATT	2 cut(s)	104, 123
XapI	RAATTY	1 cut(s)	104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.