Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035963.1

Orthogroup ID

OG0020399

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 499

Gene Structure 498 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035963.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 346 bp

atgtcccatatgataccatatttgaagatcttctcaaacaaaagccctctacttcttcaatacaacctcattcgtaagaaggttccagtgcttgtgcacaacggaaaatcaattgctgaatcttttgtgatccttgaatacattgaagaaacatggaaacaaaatcctttgctgcctgaagatcttcatgatagagcggctgcacggttttgggccaaatttggtgatgacaagatttttccacctattgtggacacattatgcaatgaagggaaagagcaagaggaagctattgtgaaagcaagggagaacttgaagtacttgcaagaagagctaaagggaaaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009404 GO:0009407 GO:0009408 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016740 GO:0016765 GO:0019748 GO:0033993 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0097305 GO:0098754 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

115

Amino Acids

13.41

Weight (kDa)

6.84

Isoelectric Point (pI)

43.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020399)

Species	Orthologous Gene IDs
malus_domestica	MD07G1078900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0339911 RchiOBHm_Chr6g0252711
rosa_multiflora	Rmu_sc0035963.1_g000001 Rmu_sc0035964.1_g000001
rosa_rugosa	Rorug01G0138400.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	197
AciI	CCGC	1 cut(s)	197
AclWI	GGATC	1 cut(s)	124
AcsI	RAATTY	1 cut(s)	218
AcuI	CTGAAG	1 cut(s)	198
AfaI	GTAC	1 cut(s)	320
AgsI	TTSAA	5 cut(s)	25, 59, 137, 146, 316
AluBI	AGCT	2 cut(s)	290, 334
AluI	AGCT	2 cut(s)	290, 334
Alw21I	GWGCWC	1 cut(s)	99
Alw44I	GTGCAC	1 cut(s)	95
AlwI	GGATC	1 cut(s)	124
AoxI	GGCC	1 cut(s)	213
ApaLI	GTGCAC	1 cut(s)	95
ApeKI	GCWGC	2 cut(s)	172, 200
ApoI	RAATTY	1 cut(s)	218
Asp700I	GAANNNNTTC	2 cut(s)	29, 183
AspS9I	GGNCC	1 cut(s)	213
AsuHPI	GGTGA	1 cut(s)	236
BaeGI	GKGCMC	1 cut(s)	99
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	2 cut(s)	159, 187
BglII	AGATCT	2 cut(s)	27, 181
BisI	GCNGC	3 cut(s)	173, 198, 201
BlsI	GCNGC	3 cut(s)	174, 199, 202
BmcAI	AGTACT	1 cut(s)	320
BmgT120I	GGNCC	1 cut(s)	213
BmiI	GGNNCC	1 cut(s)	84
Bse1I	ACTGG	1 cut(s)	86
Bse3DI	GCAATG	1 cut(s)	271
BseMI	GCAATG	1 cut(s)	271
BseNI	ACTGG	1 cut(s)	86
BseSI	GKGCMC	1 cut(s)	99
BseXI	GCAGC	2 cut(s)	159, 187
BsgI	GTGCAG	1 cut(s)	186
BshFI	GGCC	1 cut(s)	215
BsiHKAI	GWGCWC	1 cut(s)	99
BsnI	GGCC	1 cut(s)	215
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	3 cut(s)	27, 129, 181
BspACI	CCGC	1 cut(s)	197
BspANI	GGCC	1 cut(s)	215
BspHI	TCATGA	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	84
BspPI	GGATC	1 cut(s)	124
BspQI	GCTCTTC	1 cut(s)	324
BsrBI	CCGCTC	1 cut(s)	197
BsrDI	GCAATG	1 cut(s)	271
BsrI	ACTGG	1 cut(s)	86
BssMI	GATC	3 cut(s)	27, 129, 181
Bst4CI	ACNGT	1 cut(s)	207
Bst6I	CTCTTC	1 cut(s)	324
BstKTI	GATC	3 cut(s)	30, 132, 184
BstMBI	GATC	3 cut(s)	27, 129, 181
BstMWI	GCNNNNNNNGC	1 cut(s)	331
BstSLI	GKGCMC	1 cut(s)	99
BstV1I	GCAGC	2 cut(s)	159, 187
BstX2I	RGATCY	2 cut(s)	27, 181
BstYI	RGATCY	2 cut(s)	27, 181
BsuRI	GGCC	1 cut(s)	215
BtsIMutI	CAGTG	1 cut(s)	93
CciI	TCATGA	1 cut(s)	187
Cfr13I	GGNCC	1 cut(s)	213
Csp6I	GTAC	1 cut(s)	319
CviAII	CATG	2 cut(s)	153, 188
CviJI	RGCY	5 cut(s)	45, 200, 215, 290, 334
CviKI_1	RGCY	5 cut(s)	45, 200, 215, 290, 334
CviQI	GTAC	1 cut(s)	319
DpnI	GATC	3 cut(s)	29, 131, 183
DpnII	GATC	3 cut(s)	27, 129, 181
Eam1104I	CTCTTC	1 cut(s)	324
EarI	CTCTTC	1 cut(s)	324
Eco57I	CTGAAG	1 cut(s)	198
FaeI	CATG	2 cut(s)	156, 191
FaiI	YATR	6 cut(s)	9, 11, 19, 154, 189, 262
FatI	CATG	2 cut(s)	152, 187
FauNDI	CATATG	1 cut(s)	9
Fnu4HI	GCNGC	3 cut(s)	173, 198, 201
Fsp4HI	GCNGC	3 cut(s)	173, 198, 201
GluI	GCNGC	3 cut(s)	173, 198, 201
HaeIII	GGCC	1 cut(s)	215
Hin1II	CATG	2 cut(s)	156, 191
HinfI	GANTC	1 cut(s)	119
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	2 cut(s)	97, 253
Hpy188III	TCNNGA	1 cut(s)	188
Hpy8I	GTNNAC	2 cut(s)	97, 253
HpyAV	CCTTC	2 cut(s)	73, 263
HpyCH4III	ACNGT	1 cut(s)	207
HpyCH4V	TGCA	4 cut(s)	97, 203, 264, 325
HpyF10VI	GCNNNNNNNGC	1 cut(s)	331
Hsp92II	CATG	2 cut(s)	156, 191
Kzo9I	GATC	3 cut(s)	27, 129, 181
LguI	GCTCTTC	1 cut(s)	324
LpnPI	CCDG	2 cut(s)	99, 189
Lsp1109I	GCAGC	2 cut(s)	159, 187
MalI	GATC	3 cut(s)	29, 131, 183
MbiI	CCGCTC	1 cut(s)	197
MboI	GATC	3 cut(s)	27, 129, 181
MboII	GAAGA	7 cut(s)	22, 37, 47, 158, 176, 191, 341
MfeI	CAATTG	1 cut(s)	111
MflI	RGATCY	2 cut(s)	27, 181
MhlI	GDGCHC	1 cut(s)	99
MluCI	AATT	2 cut(s)	111, 218
MnlI	CCTC	3 cut(s)	57, 77, 277
MroXI	GAANNNNTTC	2 cut(s)	29, 183
MunI	CAATTG	1 cut(s)	111
MwoI	GCNNNNNNNGC	1 cut(s)	331
NdeI	CATATG	1 cut(s)	9
NdeII	GATC	3 cut(s)	27, 129, 181
NlaIII	CATG	2 cut(s)	156, 191
NlaIV	GGNNCC	1 cut(s)	84
PagI	TCATGA	1 cut(s)	187
PciSI	GCTCTTC	1 cut(s)	324
PdmI	GAANNNNTTC	2 cut(s)	29, 183
PfeI	GAWTC	1 cut(s)	119
PkrI	GCNGC	3 cut(s)	174, 199, 202
PspN4I	GGNNCC	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	213
PsrI	GAACNNNNNNTAC	2 cut(s)	302, 334
PsuI	RGATCY	2 cut(s)	27, 181
RsaI	GTAC	1 cut(s)	320
RsaNI	GTAC	1 cut(s)	319
SapI	GCTCTTC	1 cut(s)	324
SatI	GCNGC	3 cut(s)	173, 198, 201
Sau3AI	GATC	3 cut(s)	27, 129, 181
Sau96I	GGNCC	1 cut(s)	213
ScaI	AGTACT	1 cut(s)	320
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	5 cut(s)	69, 84, 247, 292, 336
Sse9I	AATT	2 cut(s)	111, 218
SsiI	CCGC	1 cut(s)	197
TaaI	ACNGT	1 cut(s)	207
TasI	AATT	2 cut(s)	111, 218
TatI	WGTACW	1 cut(s)	318
TauI	GCSGC	1 cut(s)	200
TfiI	GAWTC	1 cut(s)	119
TscAI	CASTG	1 cut(s)	93
TseI	GCWGC	2 cut(s)	172, 200
TspDTI	ATGAA	2 cut(s)	176, 282
TspGWI	ACGGA	1 cut(s)	117
TspRI	CASTG	1 cut(s)	93
VneI	GTGCAC	1 cut(s)	95
XapI	RAATTY	1 cut(s)	218
XmnI	GAANNNNTTC	2 cut(s)	29, 183
ZrmI	AGTACT	1 cut(s)	320

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.