Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0035964.1

Orthogroup ID

OG0020399

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 501

Gene Structure 500 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0035964.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 316 bp

atgtcccatatatatgataccatatttgaagatctctcaaacaaaagccctttacttcttcaatacaacctcattcgtaagaaggttccagtgcttgtgcacaatggaaaatcaattgctgaatcttttgtgatccttgaatacattgaggaaacatggaaacaaaatcctttgctgcctgaagatcttcacgatagagcggctgcacggtttgggccaaatttggtgatgacaagtgaagggaaagagcaagaggaagctattgtgaaagcaagggagaacttgaagtacttgcaagaagagctaaagggaaaga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004364 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006518 GO:0006575 GO:0006749 GO:0006790 GO:0006807 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009266 GO:0009404 GO:0009407 GO:0009408 GO:0009628 GO:0009636 GO:0009719 GO:0009725 GO:0009733 GO:0009735 GO:0009737 GO:0009739 GO:0009987 GO:0010033 GO:0010035 GO:0010038 GO:0016740 GO:0016765 GO:0019748 GO:0033993 GO:0034641 GO:0042221 GO:0043603 GO:0044237 GO:0044248 GO:0044424 GO:0044464 GO:0050896 GO:0051186 GO:0071704 GO:0097305 GO:0098754 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00480 ko00980 ko00982 ko00983 ko01524 ko05200 ko05204 ko05225 ko05418 map00480 map00980 map00982 map00983 map01524 map05200 map05204 map05225 map05418

Pfam Domains

Protein Families

GST_C GST_N

Protein Analysis

105

Amino Acids

12.15

Weight (kDa)

5.62

Isoelectric Point (pI)

60.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0020399)

Species	Orthologous Gene IDs
malus_domestica	MD07G1078900.v1.1
rosa_chinensis	RchiOBHm_Chr1g0339911 RchiOBHm_Chr6g0252711
rosa_multiflora	Rmu_sc0035963.1_g000001 Rmu_sc0035964.1_g000001
rosa_rugosa	Rorug01G0138400.1

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	200
AciI	CCGC	1 cut(s)	200
AclWI	GGATC	1 cut(s)	127
AcsI	RAATTY	1 cut(s)	220
AcuI	CTGAAG	1 cut(s)	201
AfaI	GTAC	1 cut(s)	290
AgsI	TTSAA	4 cut(s)	29, 62, 140, 286
AluBI	AGCT	2 cut(s)	260, 304
AluI	AGCT	2 cut(s)	260, 304
Alw21I	GWGCWC	1 cut(s)	102
Alw44I	GTGCAC	1 cut(s)	98
AlwI	GGATC	1 cut(s)	127
AoxI	GGCC	1 cut(s)	215
ApaLI	GTGCAC	1 cut(s)	98
ApeKI	GCWGC	2 cut(s)	175, 203
ApoI	RAATTY	1 cut(s)	220
Asp700I	GAANNNNTTC	1 cut(s)	186
AspS9I	GGNCC	1 cut(s)	215
AsuHPI	GGTGA	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	102
Bbv12I	GWGCWC	1 cut(s)	102
BbvI	GCAGC	2 cut(s)	162, 190
BglII	AGATCT	2 cut(s)	31, 184
BisI	GCNGC	3 cut(s)	176, 201, 204
BlsI	GCNGC	3 cut(s)	177, 202, 205
BmcAI	AGTACT	1 cut(s)	290
BmgT120I	GGNCC	1 cut(s)	215
BmiI	GGNNCC	1 cut(s)	87
Bse1I	ACTGG	1 cut(s)	89
BseNI	ACTGG	1 cut(s)	89
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	2 cut(s)	162, 190
BsgI	GTGCAG	1 cut(s)	189
BshFI	GGCC	1 cut(s)	217
BsiHKAI	GWGCWC	1 cut(s)	102
BsnI	GGCC	1 cut(s)	217
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	3 cut(s)	31, 132, 184
BspACI	CCGC	1 cut(s)	200
BspANI	GGCC	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	87
BspPI	GGATC	1 cut(s)	127
BspQI	GCTCTTC	1 cut(s)	294
BsrBI	CCGCTC	1 cut(s)	200
BsrI	ACTGG	1 cut(s)	89
BssMI	GATC	3 cut(s)	31, 132, 184
Bst4CI	ACNGT	1 cut(s)	210
Bst6I	CTCTTC	1 cut(s)	294
BstKTI	GATC	3 cut(s)	34, 135, 187
BstMBI	GATC	3 cut(s)	31, 132, 184
BstMWI	GCNNNNNNNGC	1 cut(s)	301
BstSLI	GKGCMC	1 cut(s)	102
BstV1I	GCAGC	2 cut(s)	162, 190
BstX2I	RGATCY	2 cut(s)	31, 184
BstYI	RGATCY	2 cut(s)	31, 184
BsuRI	GGCC	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	96
Cfr13I	GGNCC	1 cut(s)	215
Csp6I	GTAC	1 cut(s)	289
CviAII	CATG	1 cut(s)	156
CviJI	RGCY	5 cut(s)	48, 203, 217, 260, 304
CviKI_1	RGCY	5 cut(s)	48, 203, 217, 260, 304
CviQI	GTAC	1 cut(s)	289
DpnI	GATC	3 cut(s)	33, 134, 186
DpnII	GATC	3 cut(s)	31, 132, 184
Eam1104I	CTCTTC	1 cut(s)	294
EarI	CTCTTC	1 cut(s)	294
Eco57I	CTGAAG	1 cut(s)	201
FaeI	CATG	1 cut(s)	159
FaiI	YATR	6 cut(s)	9, 11, 13, 15, 23, 157
FatI	CATG	1 cut(s)	155
Fnu4HI	GCNGC	3 cut(s)	176, 201, 204
Fsp4HI	GCNGC	3 cut(s)	176, 201, 204
GluI	GCNGC	3 cut(s)	176, 201, 204
HaeIII	GGCC	1 cut(s)	217
Hin1II	CATG	1 cut(s)	159
HinfI	GANTC	1 cut(s)	122
HphI	GGTGA	1 cut(s)	238
Hpy166II	GTNNAC	1 cut(s)	100
Hpy188III	TCNNGA	1 cut(s)	191
Hpy8I	GTNNAC	1 cut(s)	100
HpyAV	CCTTC	2 cut(s)	76, 233
HpyCH4III	ACNGT	1 cut(s)	210
HpyCH4V	TGCA	3 cut(s)	100, 206, 295
HpyF10VI	GCNNNNNNNGC	1 cut(s)	301
Hsp92II	CATG	1 cut(s)	159
Kzo9I	GATC	3 cut(s)	31, 132, 184
LguI	GCTCTTC	1 cut(s)	294
LpnPI	CCDG	2 cut(s)	102, 192
Lsp1109I	GCAGC	2 cut(s)	162, 190
MalI	GATC	3 cut(s)	33, 134, 186
MbiI	CCGCTC	1 cut(s)	200
MboI	GATC	3 cut(s)	31, 132, 184
MboII	GAAGA	5 cut(s)	41, 50, 179, 194, 311
MfeI	CAATTG	1 cut(s)	114
MflI	RGATCY	2 cut(s)	31, 184
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	2 cut(s)	114, 220
MnlI	CCTC	3 cut(s)	80, 142, 247
MroXI	GAANNNNTTC	1 cut(s)	186
MslI	CAYNNNNRTG	1 cut(s)	12
MunI	CAATTG	1 cut(s)	114
MwoI	GCNNNNNNNGC	1 cut(s)	301
NdeII	GATC	3 cut(s)	31, 132, 184
NlaIII	CATG	1 cut(s)	159
NlaIV	GGNNCC	1 cut(s)	87
PciSI	GCTCTTC	1 cut(s)	294
PdmI	GAANNNNTTC	1 cut(s)	186
PfeI	GAWTC	1 cut(s)	122
PkrI	GCNGC	3 cut(s)	177, 202, 205
PspN4I	GGNNCC	1 cut(s)	87
PspPI	GGNCC	1 cut(s)	215
PsrI	GAACNNNNNNTAC	2 cut(s)	272, 304
PsuI	RGATCY	2 cut(s)	31, 184
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	12
SapI	GCTCTTC	1 cut(s)	294
SatI	GCNGC	3 cut(s)	176, 201, 204
Sau3AI	GATC	3 cut(s)	31, 132, 184
Sau96I	GGNCC	1 cut(s)	215
ScaI	AGTACT	1 cut(s)	290
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	4 cut(s)	72, 87, 262, 306
SmiMI	CAYNNNNRTG	1 cut(s)	12
Sse9I	AATT	2 cut(s)	114, 220
SsiI	CCGC	1 cut(s)	200
TaaI	ACNGT	1 cut(s)	210
TasI	AATT	2 cut(s)	114, 220
TatI	WGTACW	1 cut(s)	288
TauI	GCSGC	1 cut(s)	203
TfiI	GAWTC	1 cut(s)	122
TscAI	CASTG	1 cut(s)	96
TseI	GCWGC	2 cut(s)	175, 203
TspRI	CASTG	1 cut(s)	96
VneI	GTGCAC	1 cut(s)	98
XapI	RAATTY	1 cut(s)	220
XmnI	GAANNNNTTC	1 cut(s)	186
ZrmI	AGTACT	1 cut(s)	290

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.