RchiOBHm_Chr6g0252711
ERF Family

Belongs to the GST superfamily

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
Physical Location & Seq
Forward (+)
7902393 .. 7902903
511 bp
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UTR
Exon/CDS
Intron
PRQ22662

Sequence Viewer

Length: 372 bp
ATGGTCAAGCTTTTTTGCTTTGAGGATAGTTTGGGCACTGAAGCTCAAAGATGTCCTTTGCTTCTTCAACACAACCCCATTCATAAGAAGGTTCCAGTGCTTGTGCACAACGGAAAATCAATTGCTGAATCTCTTGTGATCCTTGAATACATCGAGGAAACATGGAAACAAAACTCTTTGCTACCCCAAGATCCTCATGATAAAGCCGCTGCACGATTTTGGGCCAAATTTGGTGATGACAAGATTTTTCCACCTATTGTGGACACATTATGCAGTGAAGAGAAAGAGCAAGAGGAAGCTATTGTGAAAGCAAAGGGGAAATTGAAGTACTTGGAAGGTGTACTTACATTAGCATTTGCCAAGCATAATTAG

Protein Analysis

123

Amino Acids

13.97

Weight (kDa)

6.2

Isoelectric Point (pI)

43.99

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GST_N PF02798 15 - 53 5.3e-11 Glutathione S-transferase, N-terminal domain
GST_N_2 PF13409 16 - 54 4.1e-07 Glutathione S-transferase, N-terminal domain
GST_N_3 PF13417 21 - 55 2.9e-07 Glutathione S-transferase, N-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0020399)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 207
AclWI GGATC 2 cut(s) 133, 185
AcsI RAATTY 1 cut(s) 227
AcuI CTGAAG 1 cut(s) 60
AfaI GTAC 2 cut(s) 329, 342
AgsI TTSAA 3 cut(s) 68, 146, 325
AluBI AGCT 3 cut(s) 10, 44, 299
AluI AGCT 3 cut(s) 10, 44, 299
Alw21I GWGCWC 1 cut(s) 108
Alw44I GTGCAC 1 cut(s) 104
AlwI GGATC 2 cut(s) 133, 185
AoxI GGCC 1 cut(s) 222
ApaLI GTGCAC 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 209
ApoI RAATTY 1 cut(s) 227
AspS9I GGNCC 1 cut(s) 222
AsuHPI GGTGA 1 cut(s) 245
BaeGI GKGCMC 2 cut(s) 38, 108
Bbv12I GWGCWC 1 cut(s) 108
BbvI GCAGC 1 cut(s) 196
BisI GCNGC 2 cut(s) 207, 210
BlsI GCNGC 2 cut(s) 208, 211
BmcAI AGTACT 1 cut(s) 329
BmgT120I GGNCC 1 cut(s) 222
BmiI GGNNCC 1 cut(s) 93
Bse1I ACTGG 1 cut(s) 95
BseNI ACTGG 1 cut(s) 95
BseSI GKGCMC 2 cut(s) 38, 108
BseXI GCAGC 1 cut(s) 196
BsgI GTGCAG 1 cut(s) 195
BshFI GGCC 1 cut(s) 224
BsiHKAI GWGCWC 1 cut(s) 108
BsnI GGCC 1 cut(s) 224
Bsp1286I GDGCHC 2 cut(s) 38, 108
Bsp143I GATC 2 cut(s) 138, 190
BspACI CCGC 1 cut(s) 207
BspANI GGCC 1 cut(s) 224
BspHI TCATGA 1 cut(s) 196
BspLI GGNNCC 1 cut(s) 93
BspPI GGATC 2 cut(s) 133, 185
BsrI ACTGG 1 cut(s) 95
BssMI GATC 2 cut(s) 138, 190
Bst6I CTCTTC 1 cut(s) 273
BstKTI GATC 2 cut(s) 141, 193
BstMBI GATC 2 cut(s) 138, 190
BstSLI GKGCMC 2 cut(s) 38, 108
BstV1I GCAGC 1 cut(s) 196
BstX2I RGATCY 1 cut(s) 190
BstYI RGATCY 1 cut(s) 190
BsuRI GGCC 1 cut(s) 224
BtsI GCAGTG 1 cut(s) 280
BtsIMutI CAGTG 3 cut(s) 36, 102, 280
CciI TCATGA 1 cut(s) 196
Cfr13I GGNCC 1 cut(s) 222
Csp6I GTAC 2 cut(s) 328, 341
CviAII CATG 2 cut(s) 162, 197
CviJI RGCY 5 cut(s) 10, 44, 206, 224, 299
CviKI_1 RGCY 5 cut(s) 10, 44, 206, 224, 299
CviQI GTAC 2 cut(s) 328, 341
DpnI GATC 2 cut(s) 140, 192
DpnII GATC 2 cut(s) 138, 190
Eam1104I CTCTTC 1 cut(s) 273
EarI CTCTTC 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 60
FaeI CATG 2 cut(s) 165, 200
FaiI YATR 5 cut(s) 84, 163, 198, 271, 366
FalI AAGNNNNNCTT 4 cut(s) 40, 72, 327, 359
FatI CATG 2 cut(s) 161, 196
Fnu4HI GCNGC 2 cut(s) 207, 210
Fsp4HI GCNGC 2 cut(s) 207, 210
GluI GCNGC 2 cut(s) 207, 210
HaeIII GGCC 1 cut(s) 224
Hin1II CATG 2 cut(s) 165, 200
HindIII AAGCTT 1 cut(s) 8
HinfI GANTC 1 cut(s) 128
HphI GGTGA 1 cut(s) 245
Hpy166II GTNNAC 3 cut(s) 106, 262, 341
Hpy188III TCNNGA 1 cut(s) 197
Hpy8I GTNNAC 3 cut(s) 106, 262, 341
HpyAV CCTTC 2 cut(s) 82, 329
HpyCH4V TGCA 3 cut(s) 106, 212, 273
Hsp92II CATG 2 cut(s) 165, 200
Kzo9I GATC 2 cut(s) 138, 190
LpnPI CCDG 1 cut(s) 108
Lsp1109I GCAGC 1 cut(s) 196
MalI GATC 2 cut(s) 140, 192
MboI GATC 2 cut(s) 138, 190
MboII GAAGA 2 cut(s) 56, 290
MfeI CAATTG 1 cut(s) 120
MflI RGATCY 1 cut(s) 190
MhlI GDGCHC 2 cut(s) 38, 108
MluCI AATT 4 cut(s) 120, 227, 320, 367
MnlI CCTC 4 cut(s) 16, 148, 204, 286
MspA1I CMGCKG 1 cut(s) 209
MunI CAATTG 1 cut(s) 120
NdeII GATC 2 cut(s) 138, 190
NlaIII CATG 2 cut(s) 165, 200
NlaIV GGNNCC 1 cut(s) 93
PagI TCATGA 1 cut(s) 196
PfeI GAWTC 1 cut(s) 128
PkrI GCNGC 2 cut(s) 208, 211
PspN4I GGNNCC 1 cut(s) 93
PspPI GGNCC 1 cut(s) 222
PsuI RGATCY 1 cut(s) 190
RsaI GTAC 2 cut(s) 329, 342
RsaNI GTAC 2 cut(s) 328, 341
SatI GCNGC 2 cut(s) 207, 210
Sau3AI GATC 2 cut(s) 138, 190
Sau96I GGNCC 1 cut(s) 222
ScaI AGTACT 1 cut(s) 329
SduI GDGCHC 2 cut(s) 38, 108
SetI ASST 6 cut(s) 12, 46, 93, 256, 301, 340
Sse9I AATT 4 cut(s) 120, 227, 320, 367
SsiI CCGC 1 cut(s) 207
TaqI TCGA 1 cut(s) 153
TasI AATT 4 cut(s) 120, 227, 320, 367
TatI WGTACW 2 cut(s) 327, 340
TauI GCSGC 1 cut(s) 209
TfiI GAWTC 1 cut(s) 128
TscAI CASTG 3 cut(s) 43, 102, 280
TseI GCWGC 1 cut(s) 209
TspDTI ATGAA 1 cut(s) 71
TspGWI ACGGA 1 cut(s) 126
TspRI CASTG 3 cut(s) 43, 102, 280
VneI GTGCAC 1 cut(s) 104
XapI RAATTY 1 cut(s) 227
ZrmI AGTACT 1 cut(s) 329
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.