Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0010245

Physical Location & Seq

Genomic Coordinates Forward (+)

12582841 .. 12597982

Gene Structure 15142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1109400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3225 bp

ATGGCCATCCTCGCTCTCCCACTAGTCATCTCCTTTCTCAAGCCCCACGCTTCCCGCCTCCGCCTCCTCCGCCCCGGTAACCCCAATAATCCTACCTGTCTCTACAACCCACTCTGCCACCTCCACTGCCGCCGCTTCACCAAAACCACCGTCTCCGCAGTTAGTACCTTCGCGGTTCCACAGCACGACTCGTCCACAAACCCCAACGATGAGCCCCGGAAAGCCTCCGTCCTTACTTTCCAGCAAGCCATTCAGCGGCTTCAGGAATATTGGGCTTCAGTTGGATGTGCCATAATGCAATGCAGCAACACAGAGGTTGGAGCTGGGACTATGAATCCCTTGACATTCTTAAGGGTTCTTGGTCCAGAACCGTGGAATGTTGCGTATGTGGAGCCTAGCATCCGACCAGATGATAGTCGTTATGGGGAAAATCCGAACAGGCTCCAGAGACACACTCAATTTCAGGTTATATTGAAGCCTGATCCTGGAAACTCACAAGACCTTTTCATCCGCAGCTTATCAGCTTTAGGGATTGATGTCGGTGCACATGATATACGATTTGTGGAGGACAACTGGGAGAGTCCGGTGCTAGGAGCTTGGGGTTTGGGTTGGGAAATCTGGATGGATGGAATGGAGATTACACAGTTCACCTACTTTCAGCAGGCTGGAAGTCTTCCCGTATCACCAGTATCGGTTGAAATCACTTATGGTCTAGAGCGTATCCTGATGCTGCTTCAGGGAGTTGATCATTTTAAGAAAATTCAGTATGCTGATGGAATTACATACGGAGAGCTATTCTTGGAGAATGAGAAGGAAATGAGTGCATATTATCTAGAGAATGCTGGGGTGCATCATCTTCAGAAACACTTTGATCTTTTCGAGGAGGAAGCTCGTTCATTGCTTGCTAAAGGCCTCGCAATTCCTGCGTATGATCAGCTTCTGAAAACATCACATTCTTTCAATATCTTAGACTCTAGAGGCTTTGTTGGGGTAACAGAGCGTGCTCGTTACTTTGGTCGGATGCGTAGTTTAGCTCGTCAGTGTGCACAACTTTGGTTAAAGACCAGGGAGTCCCTTGGATATCCGTTAGGCGCAATTTCTGAAACTGTTAGTCTTGTATGTCCTCAAGAGCTTGTGGAGGCAGCGGTTAAAAAGGTGCATGATGATTCAAGGTTATTTGTTCTTGAAATTGGAACTGAAGAGATGCCACCACAAGATGTTGTTGATGCCAGCCAGCAACTGAAAGATTTAACTGCTCAGTTACTAGCAAAGCAAAGATTGAGCCATGGTGAGATACAAGCTTTCGGCACACCTCGCAGACTGGTGGTTTCTGTCGAGAATCTCTGCACTAGACAAATTGAGAATGAGGTTGAGGTTCGAGGACCTCCCGTTTCAAAAGCTTATGATGATCAGGGAAATCCTACAAAGGCTGCCGAGGGTTTCTGCCGGAGATACTCTGCACCATTGAACTCGTTATTTAGAAAGTCTGATGGGAAAACAGAGTATGTCTATGCTCGAGTAACAGAGTCTGCCCGACTTGCTGTTGAGGTTTTGTCTGAGGATTTTCCCAATGTGATTGCTAGACTTTCATTTCCAAAGTCAATGCGCTGGAACTCTCAGGTTATGTTTAGCAGACCTATTCGTTGGATTTTGGCGCTCCATGGAGATGTAGTAGTGCCCTTTGCTTTTGCTGAAGTTTTGAGTGGAAACCTGTCACATGGTCTCCGTAACACGCCTGCATCTACTGTCGTGGTTGATAGTGCTGAATCTTATGCTGGTGTAATGAGGAAGGTTGGGATCAATATTGAAATTGAGGAACGTAAGAAAACAGTATTGGAGGGGTCTAATGCATTAGCCAAAAGTGTAAACGGACAAGCGTTTATTCAGGAGGGCTTACTTAATGAGGTTGTAAATCTTGTTGAGGCACCTGTTCCACTCCTTGGGGAGTTTAAAAGGTCCTTCTTAGAGCTTCCTAGTGATCTTCTGACTATGGTTATGCAGAAGCATCAGAAGTATTTTGCTGTGAAAGATGAAAATGGAAGGCTGCTGCCATATTTCATTGCTGTGGCAAATGGAGCAATTGATGAGATTGTGGTAAAAAAAGGAAATGAGGCTGTACTGAGAGCTCGCTATGAAGATGCTAAGTTCTTCTATGAAATGGATACACGGAAAAGGTTTTCAGAATTTAGAAGTCAACTGAAAGGGATTCTTTTCCATGAGAAGTTAGGAACAATGCTGGACAAGGTGCTGCGCATACAGAATACGGTTAACAAGCTAAGCTTGGCTCTTGGAATGGATGAAAATACGAACAAAGTTGTCCAGGATGCTGCATCACTCGCTATGGCAGATCTGGCTACAGCGGTTGTCACAGAGTTTACTTCCCTTTCAGGAGTAATGGCTCGTCATTATGCTCTTAGAGATGGCTATTCAGAGCAGGTTGCAGAAGCTTTGTTTGAGATCACACTTCCGAGGTTTTCTGGAGATACGCTTCCTAAAACTGATGCAGGCATAGTTCTATCTGTCGCTGACAGATTAGATAGTCTTGTCGGCTTATTTGCTGCTGGTTGTCAGCCCAGTTCTGCTAATGATGCGTTTGGCCTGAGACGAATCTCTTATGGTCTTGTCCAGGTGTTAGTGGAGAAAGATAAGCATCTGGACTTACAACAAGCATTGGAACTTGCTGCAGATGTCCAACCCATTGAAGTAGATGCAAGTACTATAAATGATGCACATCAATTTGTTACACGGAGATTAGAACAATATCTGGTTGATAAGGGAATAAGTTCAGAAGTGGTTCGTTCTGTACTTGCAGAGCGTGCAAATTCACCTTGCCTTGCAGCAAGATCTGCCTGTAAAATGGAAGCCTTGTCAAAAGGTGAGCTTTTCCAAAAGGTTGTTGAAGCATATTCTCGTCCTACAAGAATAGTTCGAGGGAAGGATGTGGATCCTCATATTGAGGTGGACGAGGCAGCCTTTGAGACAGACGAAGAGAAAGCATTATGGAATTCTTTCTTGTCCGTTCAAAACAAAATATGTCATGGTATTGAGGTTGATGAGTTTGTTGCAGTATCGTCACAGCTACTACAACCCCTCGAGGATTTCTTTAATCATGTGTTTGTAATGGTGGAAGAAGAAAGAATTCGGAAGAACAGGCTTGCTTTGCTGAAGAAAGTTTCCGACCTTCCAAGAGGAGTAGCCGACCTGTCAATTTTGCCTGGATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004820 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006426 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045995 GO:0046483 GO:0046983 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050793 GO:0051239 GO:0061458 GO:0065007 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576 GO:2000026

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

tRNA-synt_2e tRNA_synt_2f

Protein Analysis

1075

Amino Acids

119.94

Weight (kDa)

5.77

Isoelectric Point (pI)

42.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
tRNA-synt_2e	PF02091	80 - 357	1e-131	Glycyl-tRNA synthetase alpha subunit
tRNA_synt_2f	PF02092	393 - 937	9.8e-183	Glycyl-tRNA synthetase beta subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0010245)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G48110
fragaria_vesca	FvH4_7g10270 FvH4_7g10270 FvH4_7g10270 FvH4_7g10270
malus_domestica	MD07G1109400.v1.1
prunus_persica	Prupe.2G132400_v2.0.a1 Prupe.2G132400_v2.0.a1 Prupe.2G132400_v2.0.a1
pyrus_communis	pycom07g09370 pycom07g09390
rosa_chinensis	RchiOBHm_Chr1g0348021
rosa_laevigata	RLG00000028699
rosa_multiflora	Rmu_sc0018061.1_g000002
rosa_roxburghii	Rroxscaffold_4G00307330
rosa_rugosa	Rorug01G0190600
rosa_samantha	Rh1AG209200 Rh1BG174200 Rh1CG193600 Rh1DG204000
rosa_wichuraiana	Rw1G017430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1069
AbsI	CCTCGAGG	1 cut(s)	3092
Acc16I	TGCGCA	1 cut(s)	2252
Acc36I	ACCTGC	1 cut(s)	2425
AccB1I	GGYRCC	1 cut(s)	1924
AccB7I	CCANNNNNTGG	1 cut(s)	1940
AccII	CGCG	1 cut(s)	173
AclWI	GGATC	4 cut(s)	476, 1805, 2939, 2952
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	5 cut(s)	759, 2183, 2821, 3004, 3138
AcuI	CTGAAG	7 cut(s)	245, 261, 719, 842, 1218, 1713, 3185
AfaI	GTAC	4 cut(s)	166, 2118, 2716, 2805
AfiI	CCNNNNNNNGG	4 cut(s)	255, 485, 590, 1940
AflII	CTTAAG	1 cut(s)	349
AhlI	ACTAGT	1 cut(s)	22
AjnI	CCWGG	5 cut(s)	484, 1064, 2319, 2625, 3214
AjuI	GAANNNNNNNTTGG	2 cut(s)	1817, 1849
Alw21I	GWGCWC	4 cut(s)	547, 1006, 1048, 2128
Alw26I	GTCTC	6 cut(s)	104, 157, 442, 1727, 2596, 2972
Alw44I	GTGCAC	2 cut(s)	543, 1044
AlwI	GGATC	4 cut(s)	476, 1805, 2939, 2952
AlwNI	CAGNNNCTG	3 cut(s)	940, 1240, 1529
Ama87I	CYCGRG	2 cut(s)	1515, 3092
AoxI	GGCC	3 cut(s)	3, 910, 2596
ApaLI	GTGCAC	2 cut(s)	543, 1044
ApoI	RAATTY	5 cut(s)	759, 2183, 2821, 3004, 3138
ArsI	GACNNNNNNTTYG	2 cut(s)	135, 167
Asp700I	GAANNNNTTC	4 cut(s)	2782, 2793, 3008, 3138
AspLEI	GCGC	4 cut(s)	1094, 1608, 1657, 2253
AspS9I	GGNCC	3 cut(s)	362, 1382, 1956
AsuC2I	CCSGG	2 cut(s)	75, 217
AsuHPI	GGTGA	6 cut(s)	130, 640, 675, 1301, 2817, 2888
AvaI	CYCGRG	2 cut(s)	1515, 3092
AvaII	GGWCC	3 cut(s)	362, 1382, 1956
BaeGI	GKGCMC	3 cut(s)	547, 1048, 1680
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	2944
BanI	GGYRCC	1 cut(s)	1924
BanII	GRGCYC	2 cut(s)	216, 2128
BbsI	GAAGAC	1 cut(s)	665
Bbv12I	GWGCWC	4 cut(s)	547, 1006, 1048, 2128
BccI	CCATC	6 cut(s)	14, 616, 620, 767, 1484, 2414
BciT130I	CCWGG	5 cut(s)	486, 1066, 2321, 2627, 3216
BciVI	GTATCC	2 cut(s)	731, 2155
BclI	TGATCA	3 cut(s)	745, 931, 1408
BcnI	CCSGG	2 cut(s)	75, 217
BcoDI	GTCTC	6 cut(s)	104, 157, 442, 1727, 2596, 2972
BcuI	ACTAGT	1 cut(s)	22
BfmI	CTRYAG	2 cut(s)	2355, 2682
BfoI	RGCGCY	1 cut(s)	1658
BfrI	CTTAAG	1 cut(s)	349
BfuAI	ACCTGC	1 cut(s)	2425
BfuI	GTATCC	2 cut(s)	731, 2155
BglII	AGATCT	2 cut(s)	2347, 2843
BlpI	GCTNAGC	1 cut(s)	2276
BmcAI	AGTACT	1 cut(s)	2716
Bme1390I	CCNGG	7 cut(s)	75, 217, 486, 1066, 2321, 2627, 3216
Bme18I	GGWCC	3 cut(s)	362, 1382, 1956
BmeT110I	CYCGRG	2 cut(s)	1515, 3092
BmgT120I	GGNCC	3 cut(s)	362, 1382, 1956
BmiI	GGNNCC	5 cut(s)	177, 393, 443, 1926, 2946
BmrFI	CCNGG	7 cut(s)	75, 217, 486, 1066, 2321, 2627, 3216
BmrI	ACTGGG	2 cut(s)	583, 2568
BmuI	ACTGGG	2 cut(s)	583, 2568
BpiI	GAAGAC	1 cut(s)	665
BplI	GAGNNNNNCTC	2 cut(s)	439, 471
BpmI	CTGGAG	2 cut(s)	428, 2499
Bpu1102I	GCTNAGC	1 cut(s)	2276
BpuEI	CTTGAG	2 cut(s)	23, 1110
BpuMI	CCSGG	2 cut(s)	75, 217
BsaBI	GATNNNNATC	3 cut(s)	2649, 2730, 2943
BsaI	GGTCTC	1 cut(s)	1727
BsaWI	WCCGGW	1 cut(s)	583
BsaXI	ACNNNNNCTCC	4 cut(s)	1656, 1686, 1707, 1737
Bsc4I	CCNNNNNNNGG	4 cut(s)	255, 485, 590, 1940
Bse1I	ACTGG	4 cut(s)	578, 686, 1326, 2574
Bse3DI	GCAATG	3 cut(s)	305, 896, 2058
Bse8I	GATNNNNATC	3 cut(s)	2649, 2730, 2943
BseBI	CCWGG	5 cut(s)	486, 1066, 2321, 2627, 3216
BseJI	GATNNNNATC	3 cut(s)	2649, 2730, 2943
BseLI	CCNNNNNNNGG	4 cut(s)	255, 485, 590, 1940
BseMI	GCAATG	3 cut(s)	305, 896, 2058
BseMII	CTCAG	5 cut(s)	1271, 1548, 1631, 2111, 2591
BseNI	ACTGG	4 cut(s)	578, 686, 1326, 2574
BseRI	GAGGAG	3 cut(s)	56, 896, 3204
BseSI	GKGCMC	3 cut(s)	547, 1048, 1680
BseYI	CCCAGC	2 cut(s)	323, 842
BsgI	GTGCAG	2 cut(s)	1330, 1443
Bsh1236I	CGCG	1 cut(s)	173
BshFI	GGCC	3 cut(s)	5, 912, 2598
BshNI	GGYRCC	1 cut(s)	1924
BsiHKAI	GWGCWC	4 cut(s)	547, 1006, 1048, 2128
BsiHKCI	CYCGRG	2 cut(s)	1515, 3092
BsiSI	CCGG	4 cut(s)	75, 217, 584, 1447
BslFI	GGGAC	2 cut(s)	340, 1057
BslI	CCNNNNNNNGG	4 cut(s)	255, 485, 590, 1940
BsmAI	GTCTC	6 cut(s)	104, 157, 442, 1727, 2596, 2972
BsmBI	CGTCTC	2 cut(s)	157, 2596
BsmFI	GGGAC	2 cut(s)	340, 1057
BsmI	GAATGC	1 cut(s)	844
BsnI	GGCC	3 cut(s)	5, 912, 2598
Bso31I	GGTCTC	1 cut(s)	1727
BsoBI	CYCGRG	2 cut(s)	1515, 3092
Bsp1286I	GDGCHC	6 cut(s)	216, 547, 1006, 1048, 1680, 2128
Bsp1720I	GCTNAGC	1 cut(s)	2276
Bsp19I	CCATGG	2 cut(s)	1285, 1660
BspANI	GGCC	3 cut(s)	5, 912, 2598
BspCNI	CTCAG	5 cut(s)	1270, 1549, 1630, 2112, 2592
BspFNI	CGCG	1 cut(s)	173
BspLI	GGNNCC	5 cut(s)	177, 393, 443, 1926, 2946
BspMAI	CTGCAG	1 cut(s)	2686
BspMI	ACCTGC	1 cut(s)	2425
BspPI	GGATC	4 cut(s)	476, 1805, 2939, 2952
BspT107I	GGYRCC	1 cut(s)	1924
BspTI	CTTAAG	1 cut(s)	349
BspTNI	GGTCTC	1 cut(s)	1727
BsrDI	GCAATG	3 cut(s)	305, 896, 2058
BsrI	ACTGG	4 cut(s)	578, 686, 1326, 2574
BssT1I	CCWWGG	4 cut(s)	1075, 1285, 1660, 1939
Bst2UI	CCWGG	5 cut(s)	486, 1066, 2321, 2627, 3216
Bst4CI	ACNGT	7 cut(s)	151, 372, 645, 1108, 1747, 1831, 2266
Bst6I	CTCTTC	2 cut(s)	1194, 2982
BstAFI	CTTAAG	1 cut(s)	349
BstAPI	GCANNNNNTGC	3 cut(s)	923, 2816, 2846
BstDSI	CCRYGG	3 cut(s)	371, 1285, 1660
BstEII	GGTNACC	1 cut(s)	77
BstFNI	CGCG	1 cut(s)	173
BstH2I	RGCGCY	1 cut(s)	1658
BstHHI	GCGC	4 cut(s)	1094, 1608, 1657, 2253
BstMAI	GTCTC	6 cut(s)	104, 157, 442, 1727, 2596, 2972
BstNI	CCWGG	5 cut(s)	486, 1066, 2321, 2627, 3216
BstPI	GGTNACC	1 cut(s)	77
BstSCI	CCNGG	7 cut(s)	73, 215, 484, 1064, 2319, 2625, 3214
BstSFI	CTRYAG	2 cut(s)	2355, 2682
BstSLI	GKGCMC	3 cut(s)	547, 1048, 1680
BstUI	CGCG	1 cut(s)	173
BstV2I	GAAGAC	1 cut(s)	665
BstX2I	RGATCY	3 cut(s)	2347, 2843, 2944
BstXI	CCANNNNNNTGG	1 cut(s)	372
BstYI	RGATCY	3 cut(s)	2347, 2843, 2944
BsuI	GTATCC	2 cut(s)	731, 2155
BsuRI	GGCC	3 cut(s)	5, 912, 2598
BtgI	CCRYGG	3 cut(s)	371, 1285, 1660
BtsI	GCAGTG	1 cut(s)	124
BtsIMutI	CAGTG	2 cut(s)	124, 1046
BveI	ACCTGC	1 cut(s)	2425
CaiI	CAGNNNCTG	3 cut(s)	940, 1240, 1529
CfoI	GCGC	4 cut(s)	1094, 1608, 1657, 2253
Cfr13I	GGNCC	3 cut(s)	362, 1382, 1956
Csp6I	GTAC	4 cut(s)	165, 2117, 2715, 2804
CviAII	CATG	8 cut(s)	548, 1160, 1286, 1661, 1718, 2216, 3038, 3110
CviQI	GTAC	4 cut(s)	165, 2117, 2715, 2804
DraI	TTTAAA	1 cut(s)	1951
DrdI	GACNNNNNNGTC	1 cut(s)	1069
DseDI	GACNNNNNNGTC	1 cut(s)	1069
EaeI	YGGCCR	1 cut(s)	3
Eam1104I	CTCTTC	2 cut(s)	1194, 2982
EarI	CTCTTC	2 cut(s)	1194, 2982
EciI	GGCGGA	2 cut(s)	50, 59
Ecl136II	GAGCTC	1 cut(s)	2126
Eco130I	CCWWGG	4 cut(s)	1075, 1285, 1660, 1939
Eco147I	AGGCCT	1 cut(s)	912
Eco24I	GRGCYC	2 cut(s)	216, 2128
Eco31I	GGTCTC	1 cut(s)	1727
Eco32I	GATATC	1 cut(s)	1082
Eco47I	GGWCC	3 cut(s)	362, 1382, 1956
Eco53kI	GAGCTC	1 cut(s)	2126
Eco57I	CTGAAG	7 cut(s)	245, 261, 719, 842, 1218, 1713, 3185
Eco88I	CYCGRG	2 cut(s)	1515, 3092
Eco91I	GGTNACC	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	2126
EcoO109I	RGGNCCY	2 cut(s)	1382, 1956
EcoO65I	GGTNACC	1 cut(s)	77
EcoRI	GAATTC	2 cut(s)	3004, 3138
EcoRII	CCWGG	5 cut(s)	484, 1064, 2319, 2625, 3214
EcoRV	GATATC	1 cut(s)	1082
EcoT14I	CCWWGG	4 cut(s)	1075, 1285, 1660, 1939
EcoT22I	ATGCAT	1 cut(s)	1852
EcoT38I	GRGCYC	2 cut(s)	216, 2128
ErhI	CCWWGG	4 cut(s)	1075, 1285, 1660, 1939
Esp3I	CGTCTC	2 cut(s)	157, 2596
FaeI	CATG	8 cut(s)	551, 1163, 1289, 1664, 1721, 2219, 3041, 3113
FalI	AAGNNNNNCTT	6 cut(s)	2193, 2225, 2264, 2296, 2865, 2897
FaqI	GGGAC	2 cut(s)	340, 1057
FatI	CATG	8 cut(s)	547, 1159, 1285, 1660, 1717, 2215, 3037, 3109
FauI	CCCGC	1 cut(s)	62
FbaI	TGATCA	3 cut(s)	745, 931, 1408
FokI	GGATG	9 cut(s)	297, 386, 494, 634, 638, 1033, 2309, 2336, 2951
FriOI	GRGCYC	2 cut(s)	216, 2128
FspI	TGCGCA	1 cut(s)	2252
GlaI	GCGC	4 cut(s)	1093, 1607, 1656, 2252
GsaI	CCCAGC	2 cut(s)	327, 846
GsuI	CTGGAG	2 cut(s)	428, 2499
HaeII	RGCGCY	1 cut(s)	1658
HaeIII	GGCC	3 cut(s)	5, 912, 2598
HapII	CCGG	4 cut(s)	75, 217, 584, 1447
HhaI	GCGC	4 cut(s)	1094, 1608, 1657, 2253
Hin1II	CATG	8 cut(s)	551, 1163, 1289, 1664, 1721, 2219, 3041, 3113
Hin6I	GCGC	4 cut(s)	1092, 1606, 1655, 2251
HinP1I	GCGC	4 cut(s)	1092, 1606, 1655, 2251
HincII	GTYRAC	2 cut(s)	2195, 2269
HindII	GTYRAC	2 cut(s)	2195, 2269
HindIII	AAGCTT	4 cut(s)	1299, 1398, 2278, 2445
HpaI	GTTAAC	1 cut(s)	2269
HpaII	CCGG	4 cut(s)	75, 217, 584, 1447
HphI	GGTGA	6 cut(s)	130, 640, 675, 1301, 2817, 2888
Hpy166II	GTNNAC	9 cut(s)	195, 545, 648, 1046, 1867, 2195, 2269, 2376, 2962
Hpy8I	GTNNAC	9 cut(s)	195, 545, 648, 1046, 1867, 2195, 2269, 2376, 2962
HpyAV	CCTTC	7 cut(s)	178, 805, 1783, 1969, 2034, 2929, 3191
HpyCH4III	ACNGT	7 cut(s)	151, 372, 645, 1108, 1747, 1831, 2266
HpyCH4IV	ACGT	1 cut(s)	1819
HpySE526I	ACGT	1 cut(s)	1819
Hsp92II	CATG	8 cut(s)	551, 1163, 1289, 1664, 1721, 2219, 3041, 3113
HspAI	GCGC	4 cut(s)	1092, 1606, 1655, 2251
Ksp22I	TGATCA	3 cut(s)	745, 931, 1408
KspAI	GTTAAC	1 cut(s)	2269
LmnI	GCTCC	6 cut(s)	320, 391, 447, 593, 1662, 2075
MaeII	ACGT	1 cut(s)	1819
MfeI	CAATTG	1 cut(s)	2079
MflI	RGATCY	3 cut(s)	2347, 2843, 2944
MhlI	GDGCHC	6 cut(s)	216, 547, 1006, 1048, 1680, 2128
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	5 cut(s)	182, 589, 965, 1079, 1535
MmeI	TCCRAC	7 cut(s)	262, 298, 427, 998, 1625, 2716, 3201
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	1852
MroXI	GAANNNNTTC	4 cut(s)	2782, 2793, 3008, 3138
MscI	TGGCCA	1 cut(s)	5
MseI	TTAA	9 cut(s)	350, 753, 1058, 1149, 1250, 1899, 1950, 2268, 3105
MslI	CAYNNNNRTG	2 cut(s)	1665, 2063
Msp20I	TGGCCA	1 cut(s)	5
MspA1I	CMGCKG	3 cut(s)	256, 1145, 2360
MspCI	CTTAAG	1 cut(s)	349
MspI	CCGG	4 cut(s)	75, 217, 584, 1447
MspR9I	CCNGG	7 cut(s)	75, 217, 486, 1066, 2321, 2627, 3216
MunI	CAATTG	1 cut(s)	2079
Mva1269I	GAATGC	1 cut(s)	844
MvaI	CCWGG	5 cut(s)	486, 1066, 2321, 2627, 3216
MvnI	CGCG	1 cut(s)	173
NciI	CCSGG	2 cut(s)	75, 217
NcoI	CCATGG	2 cut(s)	1285, 1660
NlaIII	CATG	8 cut(s)	551, 1163, 1289, 1664, 1721, 2219, 3041, 3113
NlaIV	GGNNCC	5 cut(s)	177, 393, 443, 1926, 2946
NmeAIII	GCCGAG	1 cut(s)	1459
NmuCI	GTSAC	3 cut(s)	1713, 2365, 3072
NsbI	TGCGCA	1 cut(s)	2252
NsiI	ATGCAT	1 cut(s)	1852
PaeR7I	CTCGAG	2 cut(s)	1515, 3092
PceI	AGGCCT	1 cut(s)	912
PctI	GAATGC	1 cut(s)	844
PdmI	GAANNNNTTC	4 cut(s)	2782, 2793, 3008, 3138
PfeI	GAWTC	6 cut(s)	334, 1166, 1339, 1766, 2206, 2607
PflMI	CCANNNNNTGG	1 cut(s)	1940
PfoI	TCCNGGA	2 cut(s)	484, 2319
PleI	GAGTC	5 cut(s)	182, 588, 965, 1078, 1534
PpsI	GAGTC	5 cut(s)	182, 588, 965, 1078, 1534
PpuMI	RGGWCCY	2 cut(s)	1382, 1956
Psp124BI	GAGCTC	1 cut(s)	2128
Psp5II	RGGWCCY	2 cut(s)	1382, 1956
Psp6I	CCWGG	5 cut(s)	484, 1064, 2319, 2625, 3214
PspEI	GGTNACC	1 cut(s)	77
PspFI	CCCAGC	2 cut(s)	323, 842
PspGI	CCWGG	5 cut(s)	484, 1064, 2319, 2625, 3214
PspN4I	GGNNCC	5 cut(s)	177, 393, 443, 1926, 2946
PspPI	GGNCC	3 cut(s)	362, 1382, 1956
PspPPI	RGGWCCY	2 cut(s)	1382, 1956
PspXI	VCTCGAGB	2 cut(s)	1515, 3092
PstI	CTGCAG	1 cut(s)	2686
PstNI	CAGNNNCTG	3 cut(s)	940, 1240, 1529
PsuI	RGATCY	3 cut(s)	2347, 2843, 2944
RsaI	GTAC	4 cut(s)	166, 2118, 2716, 2805
RsaNI	GTAC	4 cut(s)	165, 2117, 2715, 2804
RseI	CAYNNNNRTG	2 cut(s)	1665, 2063
SacI	GAGCTC	1 cut(s)	2128
SaqAI	TTAA	9 cut(s)	350, 753, 1058, 1149, 1250, 1899, 1950, 2268, 3105
Sau96I	GGNCC	3 cut(s)	362, 1382, 1956
ScaI	AGTACT	1 cut(s)	2716
SchI	GAGTC	5 cut(s)	182, 589, 965, 1079, 1535
ScrFI	CCNGG	7 cut(s)	75, 217, 486, 1066, 2321, 2627, 3216
SduI	GDGCHC	6 cut(s)	216, 547, 1006, 1048, 1680, 2128
SfcI	CTRYAG	2 cut(s)	2355, 2682
Sfr274I	CTCGAG	2 cut(s)	1515, 3092
SinI	GGWCC	3 cut(s)	362, 1382, 1956
SlaI	CTCGAG	2 cut(s)	1515, 3092
SmiMI	CAYNNNNRTG	2 cut(s)	1665, 2063
SmlI	CTYRAG	5 cut(s)	38, 349, 1125, 1515, 3092
SmoI	CTYRAG	5 cut(s)	38, 349, 1125, 1515, 3092
SpeI	ACTAGT	1 cut(s)	22
SseBI	AGGCCT	1 cut(s)	912
SspI	AATATT	2 cut(s)	269, 1804
SstI	GAGCTC	1 cut(s)	2128
StuI	AGGCCT	1 cut(s)	912
StyD4I	CCNGG	7 cut(s)	73, 215, 484, 1064, 2319, 2625, 3214
StyI	CCWWGG	4 cut(s)	1075, 1285, 1660, 1939
TaaI	ACNGT	7 cut(s)	151, 372, 645, 1108, 1747, 1831, 2266
TaiI	ACGT	1 cut(s)	1822
TaqI	TCGA	6 cut(s)	879, 1335, 1378, 1516, 2929, 3093
TatI	WGTACW	3 cut(s)	2116, 2714, 2803
TauI	GCSGC	3 cut(s)	132, 135, 259
TfiI	GAWTC	6 cut(s)	334, 1166, 1339, 1766, 2206, 2607
Tru1I	TTAA	9 cut(s)	350, 753, 1058, 1149, 1250, 1899, 1950, 2268, 3105
Tru9I	TTAA	9 cut(s)	350, 753, 1058, 1149, 1250, 1899, 1950, 2268, 3105
TscAI	CASTG	2 cut(s)	131, 1046
TseFI	GTSAC	3 cut(s)	1713, 2365, 3072
Tsp45I	GTSAC	3 cut(s)	1713, 2365, 3072
TspDTI	ATGAA	9 cut(s)	347, 496, 885, 1578, 2046, 2047, 2148, 2169, 2313
TspGWI	ACGGA	8 cut(s)	217, 801, 1074, 1715, 1884, 2182, 2761, 3007
TspRI	CASTG	2 cut(s)	131, 1046
Van91I	CCANNNNNTGG	1 cut(s)	1940
Vha464I	CTTAAG	1 cut(s)	349
VneI	GTGCAC	2 cut(s)	543, 1044
VpaK11BI	GGWCC	3 cut(s)	362, 1382, 1956
XapI	RAATTY	5 cut(s)	759, 2183, 2821, 3004, 3138
XbaI	TCTAGA	3 cut(s)	712, 832, 974
XhoI	CTCGAG	2 cut(s)	1515, 3092
XmnI	GAANNNNTTC	4 cut(s)	2782, 2793, 3008, 3138
ZrmI	AGTACT	1 cut(s)	2716
Zsp2I	ATGCAT	1 cut(s)	1852

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.