pycom07g09370

glycine--tRNA ligase

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
Physical Location & Seq
Forward (+)
8646009 .. 8646445
437 bp
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UTR
Exon/CDS
Intron
pycom07g09370.2

Sequence Viewer

Length: 315 bp
ATGGCTATCCTCGCTCTCCCACTAGTCATCTCCTTTCTCAAGCCCCACGCTTCCCGCCTCCGCCTCCTACGCCCCGGCAACCCCAATAATCCTACCTGTCTCTACAACCCACTCTGCCACCGCCACTGCCGCCGCTTCACGAAAACCACAGTCTCCGCAGTTAGTACCTCCGCGGTTCCACAGCACGACTCGTCCACAAACCCCAATGATGAGCCCTGGAAAGCCTCTGTCCTTACTTTCCAGCAAGCCATTCAGCGGCTCCAGTTCTCACTCTTCAGTCCAAAGAATATTGGGCTTCAGTTGGATGTGCCATAA

Protein Analysis

105

Amino Acids

11.63

Weight (kDa)

10.2

Isoelectric Point (pI)

57.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 173
AciI CCGC 9 cut(s) 55, 61, 121, 130, 133, 156, 171, 173, 256
AcuI CTGAAG 2 cut(s) 259, 281
AfaI GTAC 1 cut(s) 166
AfiI CCNNNNNNNGG 1 cut(s) 255
AhlI ACTAGT 1 cut(s) 22
AjnI CCWGG 1 cut(s) 215
Alw26I GTCTC 2 cut(s) 104, 157
AsuC2I CCSGG 1 cut(s) 75
BanII GRGCYC 1 cut(s) 216
BciT130I CCWGG 1 cut(s) 217
BcnI CCSGG 1 cut(s) 75
BcoDI GTCTC 2 cut(s) 104, 157
BcuI ACTAGT 1 cut(s) 22
BfaI CTAG 1 cut(s) 23
BisI GCNGC 3 cut(s) 130, 133, 257
BlsI GCNGC 3 cut(s) 131, 134, 258
Bme1390I CCNGG 2 cut(s) 75, 217
BmiI GGNNCC 2 cut(s) 177, 260
BmrFI CCNGG 2 cut(s) 75, 217
BpmI CTGGAG 1 cut(s) 245
BpuEI CTTGAG 1 cut(s) 23
BpuMI CCSGG 1 cut(s) 75
BsaJI CCNNGG 3 cut(s) 73, 171, 215
Bsc4I CCNNNNNNNGG 1 cut(s) 255
Bse1I ACTGG 1 cut(s) 262
BseBI CCWGG 1 cut(s) 217
BseDI CCNNGG 3 cut(s) 73, 171, 215
BseGI GGATG 1 cut(s) 310
BseLI CCNNNNNNNGG 1 cut(s) 255
BseNI ACTGG 1 cut(s) 262
Bsh1236I CGCG 1 cut(s) 173
BsiSI CCGG 1 cut(s) 75
BslI CCNNNNNNNGG 1 cut(s) 255
BsmAI GTCTC 2 cut(s) 104, 157
Bsp1286I GDGCHC 1 cut(s) 216
BspACI CCGC 9 cut(s) 55, 61, 121, 130, 133, 156, 171, 173, 256
BspFNI CGCG 1 cut(s) 173
BspLI GGNNCC 2 cut(s) 177, 260
BsrI ACTGG 1 cut(s) 262
BssECI CCNNGG 3 cut(s) 73, 171, 215
Bst2UI CCWGG 1 cut(s) 217
Bst4CI ACNGT 1 cut(s) 151
Bst6I CTCTTC 1 cut(s) 278
BstC8I GCNNGC 1 cut(s) 246
BstDSI CCRYGG 1 cut(s) 171
BstF5I GGATG 1 cut(s) 310
BstFNI CGCG 1 cut(s) 173
BstMAI GTCTC 2 cut(s) 104, 157
BstMWI GCNNNNNNNGC 3 cut(s) 11, 69, 129
BstNI CCWGG 1 cut(s) 217
BstSCI CCNGG 2 cut(s) 73, 215
BstUI CGCG 1 cut(s) 173
BtgI CCRYGG 1 cut(s) 171
BtsCI GGATG 1 cut(s) 310
BtsI GCAGTG 1 cut(s) 124
BtsIMutI CAGTG 1 cut(s) 124
Cac8I GCNNGC 1 cut(s) 246
Cfr42I CCGCGG 1 cut(s) 174
Csp6I GTAC 1 cut(s) 165
CviJI RGCY 7 cut(s) 5, 43, 214, 224, 248, 259, 295
CviKI_1 RGCY 7 cut(s) 5, 43, 214, 224, 248, 259, 295
CviQI GTAC 1 cut(s) 165
Eam1104I CTCTTC 1 cut(s) 278
EarI CTCTTC 1 cut(s) 278
EciI GGCGGA 1 cut(s) 50
Eco24I GRGCYC 1 cut(s) 216
Eco57I CTGAAG 2 cut(s) 259, 281
EcoRII CCWGG 1 cut(s) 215
EcoT38I GRGCYC 1 cut(s) 216
FaiI YATR 1 cut(s) 313
FauI CCCGC 1 cut(s) 62
Fnu4HI GCNGC 3 cut(s) 130, 133, 257
FriOI GRGCYC 1 cut(s) 216
Fsp4HI GCNGC 3 cut(s) 130, 133, 257
FspBI CTAG 1 cut(s) 23
GluI GCNGC 3 cut(s) 130, 133, 257
GsuI CTGGAG 1 cut(s) 245
HapII CCGG 1 cut(s) 75
HinfI GANTC 1 cut(s) 188
HpaII CCGG 1 cut(s) 75
Hpy166II GTNNAC 1 cut(s) 195
Hpy188III TCNNGA 1 cut(s) 139
Hpy8I GTNNAC 1 cut(s) 195
HpyCH4III ACNGT 1 cut(s) 151
HpyF10VI GCNNNNNNNGC 3 cut(s) 11, 69, 129
KspI CCGCGG 1 cut(s) 174
LmnI GCTCC 1 cut(s) 264
LpnPI CCDG 6 cut(s) 88, 109, 202, 229, 254, 275
MaeI CTAG 1 cut(s) 23
MboII GAAGA 1 cut(s) 265
MhlI GDGCHC 1 cut(s) 216
MlyI GAGTC 1 cut(s) 182
MmeI TCCRAC 1 cut(s) 282
MnlI CCTC 5 cut(s) 20, 68, 74, 178, 235
MspA1I CMGCKG 2 cut(s) 173, 256
MspI CCGG 1 cut(s) 75
MspR9I CCNGG 2 cut(s) 75, 217
MvaI CCWGG 1 cut(s) 217
MvnI CGCG 1 cut(s) 173
MwoI GCNNNNNNNGC 3 cut(s) 11, 69, 129
NciI CCSGG 1 cut(s) 75
NlaIV GGNNCC 2 cut(s) 177, 260
PkrI GCNGC 3 cut(s) 131, 134, 258
PleI GAGTC 1 cut(s) 182
PpsI GAGTC 1 cut(s) 182
Psp6I CCWGG 1 cut(s) 215
PspGI CCWGG 1 cut(s) 215
PspN4I GGNNCC 2 cut(s) 177, 260
RsaI GTAC 1 cut(s) 166
RsaNI GTAC 1 cut(s) 165
SacII CCGCGG 1 cut(s) 174
SatI GCNGC 3 cut(s) 130, 133, 257
SchI GAGTC 1 cut(s) 182
ScrFI CCNGG 2 cut(s) 75, 217
SduI GDGCHC 1 cut(s) 216
SetI ASST 2 cut(s) 98, 170
Sfr303I CCGCGG 1 cut(s) 174
SgrBI CCGCGG 1 cut(s) 174
SmlI CTYRAG 1 cut(s) 38
SmoI CTYRAG 1 cut(s) 38
SpeI ACTAGT 1 cut(s) 22
SsiI CCGC 9 cut(s) 55, 61, 121, 130, 133, 156, 171, 173, 256
SspI AATATT 1 cut(s) 289
SspMI CTAG 1 cut(s) 23
StyD4I CCNGG 2 cut(s) 73, 215
TaaI ACNGT 1 cut(s) 151
TauI GCSGC 3 cut(s) 132, 135, 259
TscAI CASTG 1 cut(s) 131
TspRI CASTG 1 cut(s) 131
XspI CTAG 1 cut(s) 23
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.