MD07G1116600.v1.1

lipid-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0015131
Physical Location & Seq
Reverse (-)
14184587 .. 14184982
396 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1116600.v1.1.491

Sequence Viewer

Length: 396 bp
ATGGACTTTAGGTGTTCCAAGGACGTTGCTCTTTTCATTCTCTTCAACATCATATTCTCGTCCCTCGTTTCCTCTCATAAGGTTCCATGCCCTCCTGCAAGTCCTTCCCCGCCTCCCTCTATTCCAAAGGAGCAAGCCAAATGCCCCAAAGATACCCTTAAGTTTGGTGTTTGTGGGAGTTGGTTAGGGTTGGTGACCGAGGTTATTGGGACTAAACCCAGCAAGGAATGCTGTACCCTAATAAAGGGCGTCGCAGATCTTGAAGCTGCATTGTGTCTCTGCACTGCAATTAAGGCCAACGTCTTGGGAATTGTCAAGCTCAATGTTCCTGTTGCTTTTAGTTTGCTTGTTAATGCATGTGGCGGAAACGTGCCACAAGGCTTTGTCTGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrophob_seed

Protein Analysis

132

Amino Acids

13.71

Weight (kDa)

8.56

Isoelectric Point (pI)

53.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 42 - 130 8.2e-08 Probable lipid transfer
Hydrophob_seed PF14547 48 - 131 1.8e-24 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 48 - 130 1.4e-14 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00165 AT4G00165
fragaria_vesca FvH4_7g11190
malus_domestica MD07G1116600.v1.1
prunus_persica Prupe.2G139600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0349271
rosa_laevigata RLG00000028561
rosa_multiflora Rmu_sc0000827.1_g000014 Rmu_sc0002914.1_g000025
rosa_roxburghii Rroxscaffold_4G00305730
rosa_rugosa Rorug01G0202300
rosa_samantha Rh1AG219900 Rh1BG185700 Rh1CG204900 Rh1DG215400
rosa_wichuraiana Rw1G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 110, 363
AcyI GRCGYC 1 cut(s) 249
AfaI GTAC 1 cut(s) 235
AfiI CCNNNNNNNGG 1 cut(s) 244
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 2 cut(s) 46, 263
AluBI AGCT 2 cut(s) 266, 319
AluI AGCT 2 cut(s) 266, 319
Alw26I GTCTC 1 cut(s) 281
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 205
BbvI GCAGC 1 cut(s) 253
BcoDI GTCTC 1 cut(s) 281
BfrI CTTAAG 1 cut(s) 158
BglII AGATCT 1 cut(s) 256
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
BmiI GGNNCC 1 cut(s) 84
BsaHI GRCGYC 1 cut(s) 249
BsaJI CCNNGG 2 cut(s) 18, 198
Bsc4I CCNNNNNNNGG 1 cut(s) 244
BseDI CCNNGG 2 cut(s) 18, 198
BseLI CCNNNNNNNGG 1 cut(s) 244
BseXI GCAGC 1 cut(s) 253
BseYI CCCAGC 1 cut(s) 218
BsgI GTGCAG 1 cut(s) 265
BshFI GGCC 1 cut(s) 296
BslFI GGGAC 2 cut(s) 46, 223
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 1 cut(s) 281
BsmFI GGGAC 2 cut(s) 46, 223
BsmI GAATGC 1 cut(s) 233
BsnI GGCC 1 cut(s) 296
Bsp143I GATC 1 cut(s) 256
BspACI CCGC 2 cut(s) 110, 363
BspANI GGCC 1 cut(s) 296
BspLI GGNNCC 1 cut(s) 84
BspTI CTTAAG 1 cut(s) 158
BssECI CCNNGG 2 cut(s) 18, 198
BssMI GATC 1 cut(s) 256
BssNI GRCGYC 1 cut(s) 249
BssT1I CCWWGG 1 cut(s) 18
Bst6I CTCTTC 1 cut(s) 47
BstACI GRCGYC 1 cut(s) 249
BstAFI CTTAAG 1 cut(s) 158
BstAPI GCANNNNNTGC 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 135
BstEII GGTNACC 1 cut(s) 193
BstENI CCTNNNNNAGG 1 cut(s) 242
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 1 cut(s) 281
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 2 cut(s) 228, 293
BstNSI RCATGY 1 cut(s) 360
BstPI GGTNACC 1 cut(s) 193
BstV1I GCAGC 1 cut(s) 253
BstX2I RGATCY 1 cut(s) 256
BstXI CCANNNNNNTGG 1 cut(s) 304
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 1 cut(s) 296
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 135
CseI GACGC 1 cut(s) 238
Csp6I GTAC 1 cut(s) 234
CviAII CATG 2 cut(s) 87, 357
CviJI RGCY 5 cut(s) 137, 266, 296, 319, 381
CviKI_1 RGCY 5 cut(s) 137, 266, 296, 319, 381
CviQI GTAC 1 cut(s) 234
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
Eam1104I CTCTTC 1 cut(s) 47
EarI CTCTTC 1 cut(s) 47
EciI GGCGGA 1 cut(s) 378
Eco130I CCWWGG 1 cut(s) 18
Eco91I GGTNACC 1 cut(s) 193
EcoNI CCTNNNNNAGG 1 cut(s) 242
EcoO65I GGTNACC 1 cut(s) 193
EcoT14I CCWWGG 1 cut(s) 18
EcoT22I ATGCAT 1 cut(s) 358
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 2 cut(s) 90, 360
FaiI YATR 4 cut(s) 53, 78, 88, 358
FalI AAGNNNNNCTT 2 cut(s) 141, 173
FaqI GGGAC 2 cut(s) 46, 223
FatI CATG 2 cut(s) 86, 356
FauI CCCGC 1 cut(s) 117
Fnu4HI GCNGC 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 267
GluI GCNGC 1 cut(s) 267
GsaI CCCAGC 1 cut(s) 222
HaeIII GGCC 1 cut(s) 296
HgaI GACGC 1 cut(s) 238
Hin1I GRCGYC 1 cut(s) 249
Hin1II CATG 2 cut(s) 90, 360
HphI GGTGA 1 cut(s) 205
Hpy188III TCNNGA 1 cut(s) 260
Hpy99I CGWCG 1 cut(s) 254
HpyAV CCTTC 1 cut(s) 114
HpyCH4IV ACGT 3 cut(s) 24, 300, 369
HpyCH4V TGCA 5 cut(s) 98, 269, 282, 287, 356
HpyF10VI GCNNNNNNNGC 2 cut(s) 228, 293
HpySE526I ACGT 3 cut(s) 24, 300, 369
Hsp92I GRCGYC 1 cut(s) 249
Hsp92II CATG 2 cut(s) 90, 360
Kzo9I GATC 1 cut(s) 256
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 3 cut(s) 108, 232, 342
Lsp1109I GCAGC 1 cut(s) 253
MaeII ACGT 3 cut(s) 24, 300, 369
MaeIII GTNAC 1 cut(s) 193
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MboII GAAGA 1 cut(s) 34
MflI RGATCY 1 cut(s) 256
MluCI AATT 2 cut(s) 288, 309
MnlI CCTC 6 cut(s) 74, 82, 102, 123, 127, 193
Mph1103I ATGCAT 1 cut(s) 358
MseI TTAA 4 cut(s) 159, 291, 351, 394
MspCI CTTAAG 1 cut(s) 158
Mva1269I GAATGC 1 cut(s) 233
MwoI GCNNNNNNNGC 2 cut(s) 228, 293
NdeII GATC 1 cut(s) 256
NlaIII CATG 2 cut(s) 90, 360
NlaIV GGNNCC 1 cut(s) 84
NmuCI GTSAC 1 cut(s) 193
NsiI ATGCAT 1 cut(s) 358
NspI RCATGY 1 cut(s) 360
PctI GAATGC 1 cut(s) 233
PkrI GCNGC 1 cut(s) 268
PspEI GGTNACC 1 cut(s) 193
PspFI CCCAGC 1 cut(s) 218
PspN4I GGNNCC 1 cut(s) 84
PsuI RGATCY 1 cut(s) 256
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SaqAI TTAA 4 cut(s) 159, 291, 351, 394
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 1 cut(s) 256
SetI ASST 8 cut(s) 14, 27, 84, 204, 268, 303, 321, 372
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 2 cut(s) 288, 309
SsiI CCGC 2 cut(s) 110, 363
StyI CCWWGG 1 cut(s) 18
TaiI ACGT 3 cut(s) 27, 303, 372
TaqII GACCGA 1 cut(s) 212
TasI AATT 2 cut(s) 288, 309
Tru1I TTAA 4 cut(s) 159, 291, 351, 394
Tru9I TTAA 4 cut(s) 159, 291, 351, 394
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 1 cut(s) 25
TspRI CASTG 1 cut(s) 289
Vha464I CTTAAG 1 cut(s) 158
XagI CCTNNNNNAGG 1 cut(s) 242
XceI RCATGY 1 cut(s) 360
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.