RLG00000028561

lipid-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0015131
Physical Location & Seq
Forward (+)
24378644 .. 24382181
3538 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000028561

Sequence Viewer

Length: 609 bp
ATGGGTATCCTAAAAGAGATTGTTCAATCTGTAATGTCAAACCCATCCATGGGAAGGGTAGGAGACTTGGAAAGGGAGGATTTCAAACTTCTGCTCTTGTTTTTCATATATCAACAGAGTTGTGCTGGTGTGGTTTTCTGGGAGGGCGACATCTCTACAGATTCACTTGAAGACTCATCTAAAGACTTAATTAAAAACAGCGCAAAGAAGAAGATGGCTTGTAGGGGTTCCACGGCAGTTGCTCTTATCATTCTCCTAGACATCATATTTTTCTCTCTGGTATCCTCTCACGAGGTTCCATGTCCTCCTACAAATCCTTCCTCTCCTCCCTCTATTCCAAAGAAGCAAGCCAAGTGTCCCAGAGACACCCTCAAGTTCGGGGTCTGTGGGAGTTGGTTAGGATTGGTGACTGAGGTCGTCGGGACGAAACCCAGCGAGGAATGTTGCACCCTGATAAAGGGTCTGGCGGATCTTGAAGCTGCATTGTGTCTGTGTACTGCTATTAGGGCCAATGTACTGGGACTTGTCAAGCTCAAAGTGCCTGTTGCTGTTAGCTTGCTTGTTAATGCTTGTGGGGGAAAGGTGCCCGAAGGCTTTGTCTGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrophob_seed

Protein Analysis

203

Amino Acids

21.55

Weight (kDa)

7.42

Isoelectric Point (pI)

49.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 114 - 201 7.1e-07 Probable lipid transfer
Hydrophob_seed PF14547 119 - 202 4.7e-25 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 119 - 201 1.7e-13 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00165 AT4G00165
fragaria_vesca FvH4_7g11190
malus_domestica MD07G1116600.v1.1
prunus_persica Prupe.2G139600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0349271
rosa_laevigata RLG00000028561
rosa_multiflora Rmu_sc0000827.1_g000014 Rmu_sc0002914.1_g000025
rosa_roxburghii Rroxscaffold_4G00305730
rosa_rugosa Rorug01G0202300
rosa_samantha Rh1AG219900 Rh1BG185700 Rh1CG204900 Rh1DG215400
rosa_wichuraiana Rw1G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 583
AciI CCGC 1 cut(s) 467
AclWI GGATC 1 cut(s) 477
AfaI GTAC 2 cut(s) 496, 516
AfiI CCNNNNNNNGG 4 cut(s) 49, 50, 54, 457
AgsI TTSAA 4 cut(s) 26, 85, 170, 476
AluBI AGCT 3 cut(s) 479, 532, 555
AluI AGCT 3 cut(s) 479, 532, 555
Alw26I GTCTC 2 cut(s) 57, 357
AlwI GGATC 1 cut(s) 477
AoxI GGCC 1 cut(s) 507
ApeKI GCWGC 1 cut(s) 479
ArsI GACNNNNNNTTYG 1 cut(s) 582
AspLEI GCGC 1 cut(s) 203
AspS9I GGNCC 1 cut(s) 507
AsuHPI GGTGA 1 cut(s) 418
BaeGI GKGCMC 1 cut(s) 588
BanI GGYRCC 1 cut(s) 583
BauI CACGAG 1 cut(s) 290
BbsI GAAGAC 1 cut(s) 177
BbvI GCAGC 1 cut(s) 466
BccI CCATC 2 cut(s) 52, 208
BceAI ACGGC 1 cut(s) 249
BciVI GTATCC 2 cut(s) 17, 292
BcoDI GTCTC 2 cut(s) 57, 357
BfaI CTAG 1 cut(s) 257
BfmI CTRYAG 1 cut(s) 156
BfuI GTATCC 2 cut(s) 17, 292
BisI GCNGC 1 cut(s) 480
BlsI GCNGC 1 cut(s) 481
BmgT120I GGNCC 1 cut(s) 507
BmiI GGNNCC 3 cut(s) 229, 297, 585
BmrI ACTGGG 1 cut(s) 527
BmuI ACTGGG 1 cut(s) 527
BoxI GACNNNNGTC 1 cut(s) 413
BpiI GAAGAC 1 cut(s) 177
BplI GAGNNNNNCTC 2 cut(s) 354, 386
BpuEI CTTGAG 1 cut(s) 356
BsaJI CCNNGG 2 cut(s) 48, 231
Bsc4I CCNNNNNNNGG 4 cut(s) 49, 50, 54, 457
Bse1I ACTGG 1 cut(s) 522
BseDI CCNNGG 2 cut(s) 48, 231
BseGI GGATG 1 cut(s) 44
BseLI CCNNNNNNNGG 4 cut(s) 49, 50, 54, 457
BseMII CTCAG 1 cut(s) 402
BseNI ACTGG 1 cut(s) 522
BseRI GAGGAG 1 cut(s) 315
BseSI GKGCMC 1 cut(s) 588
BseXI GCAGC 1 cut(s) 466
BseYI CCCAGC 1 cut(s) 431
BshFI GGCC 1 cut(s) 509
BshNI GGYRCC 1 cut(s) 583
BslFI GGGAC 3 cut(s) 342, 436, 534
BslI CCNNNNNNNGG 4 cut(s) 49, 50, 54, 457
BsmAI GTCTC 2 cut(s) 57, 357
BsmFI GGGAC 3 cut(s) 342, 436, 534
BsnI GGCC 1 cut(s) 509
Bsp1286I GDGCHC 1 cut(s) 588
Bsp143I GATC 1 cut(s) 469
Bsp19I CCATGG 1 cut(s) 48
BspACI CCGC 1 cut(s) 467
BspANI GGCC 1 cut(s) 509
BspCNI CTCAG 1 cut(s) 403
BspLI GGNNCC 3 cut(s) 229, 297, 585
BspPI GGATC 1 cut(s) 477
BspT107I GGYRCC 1 cut(s) 583
BsrI ACTGG 1 cut(s) 522
BssECI CCNNGG 2 cut(s) 48, 231
BssMI GATC 1 cut(s) 469
BssSI CACGAG 1 cut(s) 290
BssT1I CCWWGG 1 cut(s) 48
Bst2BI CACGAG 1 cut(s) 290
BstC8I GCNNGC 2 cut(s) 348, 557
BstDEI CTNAG 1 cut(s) 411
BstDSI CCRYGG 2 cut(s) 48, 231
BstENI CCTNNNNNAGG 1 cut(s) 455
BstF5I GGATG 1 cut(s) 44
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 1 cut(s) 472
BstMAI GTCTC 2 cut(s) 57, 357
BstMBI GATC 1 cut(s) 469
BstMWI GCNNNNNNNGC 2 cut(s) 506, 538
BstPAI GACNNNNGTC 1 cut(s) 413
BstSFI CTRYAG 1 cut(s) 156
BstSLI GKGCMC 1 cut(s) 588
BstV1I GCAGC 1 cut(s) 466
BstV2I GAAGAC 1 cut(s) 177
BstX2I RGATCY 1 cut(s) 469
BstXI CCANNNNNNTGG 1 cut(s) 517
BstYI RGATCY 1 cut(s) 469
BsuI GTATCC 2 cut(s) 17, 292
BsuRI GGCC 1 cut(s) 509
BtgI CCRYGG 2 cut(s) 48, 231
BtsCI GGATG 1 cut(s) 44
Cac8I GCNNGC 2 cut(s) 348, 557
CfoI GCGC 1 cut(s) 203
Cfr13I GGNCC 1 cut(s) 507
Csp6I GTAC 2 cut(s) 495, 515
CspCI CAANNNNNGTGG 2 cut(s) 220, 255
CviAII CATG 2 cut(s) 49, 300
CviJI RGCY 7 cut(s) 218, 350, 479, 509, 532, 555, 594
CviKI_1 RGCY 7 cut(s) 218, 350, 479, 509, 532, 555, 594
CviQI GTAC 2 cut(s) 495, 515
DdeI CTNAG 1 cut(s) 411
DpnI GATC 1 cut(s) 471
DpnII GATC 1 cut(s) 469
EciI GGCGGA 1 cut(s) 482
Eco130I CCWWGG 1 cut(s) 48
EcoNI CCTNNNNNAGG 1 cut(s) 455
EcoT14I CCWWGG 1 cut(s) 48
ErhI CCWWGG 1 cut(s) 48
FaeI CATG 2 cut(s) 52, 303
FaiI YATR 5 cut(s) 50, 107, 109, 266, 301
FaqI GGGAC 3 cut(s) 342, 436, 534
FatI CATG 2 cut(s) 48, 299
Fnu4HI GCNGC 1 cut(s) 480
FokI GGATG 1 cut(s) 31
Fsp4HI GCNGC 1 cut(s) 480
FspBI CTAG 1 cut(s) 257
GlaI GCGC 1 cut(s) 202
GluI GCNGC 1 cut(s) 480
GsaI CCCAGC 1 cut(s) 435
HaeIII GGCC 1 cut(s) 509
HhaI GCGC 1 cut(s) 203
Hin1II CATG 2 cut(s) 52, 303
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HinfI GANTC 2 cut(s) 161, 173
HphI GGTGA 1 cut(s) 418
Hpy166II GTNNAC 1 cut(s) 495
Hpy188III TCNNGA 3 cut(s) 290, 421, 473
Hpy8I GTNNAC 1 cut(s) 495
Hpy99I CGWCG 1 cut(s) 422
HpyAV CCTTC 3 cut(s) 48, 327, 584
HpyCH4V TGCA 2 cut(s) 447, 482
HpyF10VI GCNNNNNNNGC 2 cut(s) 506, 538
HpyF3I CTNAG 1 cut(s) 411
Hsp92II CATG 2 cut(s) 52, 303
HspAI GCGC 1 cut(s) 201
Kzo9I GATC 1 cut(s) 469
LpnPI CCDG 9 cut(s) 111, 124, 263, 373, 445, 449, 464, 503, 555
Lsp1109I GCAGC 1 cut(s) 466
MaeI CTAG 1 cut(s) 257
MaeIII GTNAC 1 cut(s) 406
MalI GATC 1 cut(s) 471
MboI GATC 1 cut(s) 469
MboII GAAGA 3 cut(s) 182, 220, 223
MflI RGATCY 1 cut(s) 469
MhlI GDGCHC 1 cut(s) 588
MluCI AATT 1 cut(s) 189
MlyI GAGTC 1 cut(s) 167
MseI TTAA 3 cut(s) 188, 192, 564
MwoI GCNNNNNNNGC 2 cut(s) 506, 538
NcoI CCATGG 1 cut(s) 48
NdeII GATC 1 cut(s) 469
NlaIII CATG 2 cut(s) 52, 303
NlaIV GGNNCC 3 cut(s) 229, 297, 585
NmuCI GTSAC 1 cut(s) 406
PacI TTAATTAA 1 cut(s) 192
PfeI GAWTC 1 cut(s) 161
PkrI GCNGC 1 cut(s) 481
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
PshAI GACNNNNGTC 1 cut(s) 413
PspFI CCCAGC 1 cut(s) 431
PspN4I GGNNCC 3 cut(s) 229, 297, 585
PspPI GGNCC 1 cut(s) 507
PsuI RGATCY 1 cut(s) 469
RsaI GTAC 2 cut(s) 496, 516
RsaNI GTAC 2 cut(s) 495, 515
SaqAI TTAA 3 cut(s) 188, 192, 564
SatI GCNGC 1 cut(s) 480
Sau3AI GATC 1 cut(s) 469
Sau96I GGNCC 1 cut(s) 507
SchI GAGTC 1 cut(s) 167
SduI GDGCHC 1 cut(s) 588
SetI ASST 6 cut(s) 297, 417, 481, 534, 557, 585
SfcI CTRYAG 1 cut(s) 156
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 1 cut(s) 189
SsiI CCGC 1 cut(s) 467
SspMI CTAG 1 cut(s) 257
StyI CCWWGG 1 cut(s) 48
TasI AATT 1 cut(s) 189
TatI WGTACW 2 cut(s) 494, 514
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 3 cut(s) 188, 192, 564
Tru9I TTAA 3 cut(s) 188, 192, 564
TseFI GTSAC 1 cut(s) 406
TseI GCWGC 1 cut(s) 479
Tsp45I GTSAC 1 cut(s) 406
TspDTI ATGAA 1 cut(s) 94
XagI CCTNNNNNAGG 1 cut(s) 455
XspI CTAG 1 cut(s) 257
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.