Prupe.2G139600_v2.0.a1

lipid-binding protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
OG0015131
Physical Location & Seq
Reverse (-)
19661006 .. 19661588
583 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G139600.1

Sequence Viewer

Length: 396 bp
ATGGGCTTCAGGGGTTCCCAGGCAGTTGTTCTTTTCATTCTCTTTAACATCATATGTTTGTCTCTTGTTTCCTCTAACAAGGTTCCATGCCCTCCTACAAGTCCTTCCTCGCCTGCCTCTGTCCCAAAGAAGCAAGACAAATGCCCTAGAGATACCCTTAAGTTTGGTGTTTGTGGCAGTTGGTTAGGGTTGGTGACCGAGGTTATTGGGACTAAACCCAGCAAGGAATGCTGTACCCTAATCAAGGGTCTTGCAGATCTTGAAGCTGCATTGTGTCTCTGCACTGCTATTAAGGCCAATGTCTTGGGAATTGTCAAGCTCGAAGTGCCTGTTGCTCTTAGTTTGCTTGTTAATGCATGTGGAGGAAAGGTGCCACAAGGTTTTGTCTGTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Hydrophob_seed

Protein Analysis

132

Amino Acids

13.6

Weight (kDa)

8.87

Isoelectric Point (pI)

53.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00165 AT4G00165
fragaria_vesca FvH4_7g11190
malus_domestica MD07G1116600.v1.1
prunus_persica Prupe.2G139600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0349271
rosa_laevigata RLG00000028561
rosa_multiflora Rmu_sc0000827.1_g000014 Rmu_sc0002914.1_g000025
rosa_roxburghii Rroxscaffold_4G00305730
rosa_rugosa Rorug01G0202300
rosa_samantha Rh1AG219900 Rh1BG185700 Rh1CG204900 Rh1DG215400
rosa_wichuraiana Rw1G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 370
AfaI GTAC 1 cut(s) 235
AfiI CCNNNNNNNGG 1 cut(s) 244
AflII CTTAAG 1 cut(s) 158
AgsI TTSAA 1 cut(s) 263
AjnI CCWGG 1 cut(s) 18
AluBI AGCT 2 cut(s) 266, 319
AluI AGCT 2 cut(s) 266, 319
Alw26I GTCTC 2 cut(s) 66, 281
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 205
BanI GGYRCC 1 cut(s) 370
BbvI GCAGC 1 cut(s) 253
BciT130I CCWGG 1 cut(s) 20
BcoDI GTCTC 2 cut(s) 66, 281
BfaI CTAG 1 cut(s) 147
BfrI CTTAAG 1 cut(s) 158
BglII AGATCT 1 cut(s) 256
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
Bme1390I CCNGG 1 cut(s) 20
BmiI GGNNCC 3 cut(s) 16, 84, 372
BmrFI CCNGG 1 cut(s) 20
BsaJI CCNNGG 2 cut(s) 18, 198
BsaXI ACNNNNNCTCC 2 cut(s) 354, 384
Bsc4I CCNNNNNNNGG 1 cut(s) 244
BseBI CCWGG 1 cut(s) 20
BseDI CCNNGG 2 cut(s) 18, 198
BseLI CCNNNNNNNGG 1 cut(s) 244
BseXI GCAGC 1 cut(s) 253
BseYI CCCAGC 1 cut(s) 218
BsgI GTGCAG 1 cut(s) 265
BshFI GGCC 1 cut(s) 296
BshNI GGYRCC 1 cut(s) 370
BslFI GGGAC 2 cut(s) 107, 223
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 2 cut(s) 66, 281
BsmFI GGGAC 2 cut(s) 107, 223
BsmI GAATGC 1 cut(s) 233
BsnI GGCC 1 cut(s) 296
Bsp143I GATC 1 cut(s) 256
BspANI GGCC 1 cut(s) 296
BspLI GGNNCC 3 cut(s) 16, 84, 372
BspT107I GGYRCC 1 cut(s) 370
BspTI CTTAAG 1 cut(s) 158
BssECI CCNNGG 2 cut(s) 18, 198
BssMI GATC 1 cut(s) 256
Bst2UI CCWGG 1 cut(s) 20
BstAFI CTTAAG 1 cut(s) 158
BstAPI GCANNNNNTGC 1 cut(s) 228
BstC8I GCNNGC 1 cut(s) 114
BstDEI CTNAG 1 cut(s) 338
BstEII GGTNACC 1 cut(s) 193
BstENI CCTNNNNNAGG 1 cut(s) 242
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 2 cut(s) 66, 281
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 3 cut(s) 228, 293, 325
BstNI CCWGG 1 cut(s) 20
BstNSI RCATGY 1 cut(s) 360
BstPI GGTNACC 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 18
BstV1I GCAGC 1 cut(s) 253
BstX2I RGATCY 1 cut(s) 256
BstXI CCANNNNNNTGG 1 cut(s) 304
BstYI RGATCY 1 cut(s) 256
BsuRI GGCC 1 cut(s) 296
BtsI GCAGTG 1 cut(s) 282
BtsIMutI CAGTG 1 cut(s) 282
Cac8I GCNNGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 234
CviAII CATG 2 cut(s) 87, 357
CviJI RGCY 4 cut(s) 6, 266, 296, 319
CviKI_1 RGCY 4 cut(s) 6, 266, 296, 319
CviQI GTAC 1 cut(s) 234
DdeI CTNAG 1 cut(s) 338
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
Eco91I GGTNACC 1 cut(s) 193
EcoNI CCTNNNNNAGG 1 cut(s) 242
EcoO65I GGTNACC 1 cut(s) 193
EcoRII CCWGG 1 cut(s) 18
EcoT22I ATGCAT 1 cut(s) 358
FaeI CATG 2 cut(s) 90, 360
FaiI YATR 4 cut(s) 53, 55, 88, 358
FaqI GGGAC 2 cut(s) 107, 223
FatI CATG 2 cut(s) 86, 356
FauNDI CATATG 1 cut(s) 53
Fnu4HI GCNGC 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 267
FspBI CTAG 1 cut(s) 147
GluI GCNGC 1 cut(s) 267
GsaI CCCAGC 1 cut(s) 222
HaeIII GGCC 1 cut(s) 296
Hin1II CATG 2 cut(s) 90, 360
HphI GGTGA 1 cut(s) 205
Hpy188III TCNNGA 1 cut(s) 260
HpyAV CCTTC 1 cut(s) 114
HpyCH4V TGCA 4 cut(s) 254, 269, 282, 356
HpyF10VI GCNNNNNNNGC 3 cut(s) 228, 293, 325
HpyF3I CTNAG 1 cut(s) 338
Hsp92II CATG 2 cut(s) 90, 360
Kzo9I GATC 1 cut(s) 256
LpnPI CCDG 5 cut(s) 5, 32, 126, 232, 342
Lsp1109I GCAGC 1 cut(s) 253
MaeI CTAG 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 193
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MflI RGATCY 1 cut(s) 256
MluCI AATT 1 cut(s) 309
MnlI CCTC 6 cut(s) 82, 102, 118, 127, 193, 356
Mph1103I ATGCAT 1 cut(s) 358
MseI TTAA 5 cut(s) 45, 159, 291, 351, 394
MspCI CTTAAG 1 cut(s) 158
MspR9I CCNGG 1 cut(s) 20
Mva1269I GAATGC 1 cut(s) 233
MvaI CCWGG 1 cut(s) 20
MwoI GCNNNNNNNGC 3 cut(s) 228, 293, 325
NdeI CATATG 1 cut(s) 53
NdeII GATC 1 cut(s) 256
NlaIII CATG 2 cut(s) 90, 360
NlaIV GGNNCC 3 cut(s) 16, 84, 372
NmuCI GTSAC 1 cut(s) 193
NsiI ATGCAT 1 cut(s) 358
NspI RCATGY 1 cut(s) 360
PctI GAATGC 1 cut(s) 233
PkrI GCNGC 1 cut(s) 268
Psp6I CCWGG 1 cut(s) 18
PspEI GGTNACC 1 cut(s) 193
PspFI CCCAGC 1 cut(s) 218
PspGI CCWGG 1 cut(s) 18
PspN4I GGNNCC 3 cut(s) 16, 84, 372
PsuI RGATCY 1 cut(s) 256
RsaI GTAC 1 cut(s) 235
RsaNI GTAC 1 cut(s) 234
SaqAI TTAA 5 cut(s) 45, 159, 291, 351, 394
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 1 cut(s) 256
ScrFI CCNGG 1 cut(s) 20
SetI ASST 6 cut(s) 84, 204, 268, 321, 372, 382
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 1 cut(s) 309
SspMI CTAG 1 cut(s) 147
StyD4I CCNGG 1 cut(s) 18
TaqI TCGA 1 cut(s) 321
TaqII GACCGA 1 cut(s) 212
TasI AATT 1 cut(s) 309
Tru1I TTAA 5 cut(s) 45, 159, 291, 351, 394
Tru9I TTAA 5 cut(s) 45, 159, 291, 351, 394
TscAI CASTG 1 cut(s) 289
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 1 cut(s) 25
TspRI CASTG 1 cut(s) 289
Vha464I CTTAAG 1 cut(s) 158
XagI CCTNNNNNAGG 1 cut(s) 242
XceI RCATGY 1 cut(s) 360
XspI CTAG 1 cut(s) 147
Zsp2I ATGCAT 1 cut(s) 358
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.