RchiOBHm_Chr1g0349271

lipid-binding protein

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
42374764 .. 42375532
769 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ57525

Sequence Viewer

Length: 396 bp
ATGGCTCATAGGGGTTCCAAGGCAGTTGCTCTTATCATTCTCCTTGACATCATATTTTTCTCTCTGGTATCCTCTCACGAGGTTCCATGTCCTCCTACAAATCCTTCCTCCCCTCCCTCTATTCCAAAGAAGCAAGCCAAGTGTCCCAGAGACACCCTCAAGTTCGGGGTCTGTGGGAGTTGGTTAGGATTGGTGACTGAGGTCGTCGGGACGAAACCCAGCGAGGAATGTTGCACCCTGATAAAGGGTCTGGCGGATCTTGAAGCTGCATTGTGTCTGTGTACTGCTATTAAGGCCAATGTGCTGGGAATTGTCAAGCTCAAAGTACCTGTTGCTATTAGCTTGCTTGTTAATGCTTGTGGCGGAAAGGTGCCCGAAGGCTTTGTATGTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

131

Amino Acids

13.63

Weight (kDa)

8.61

Isoelectric Point (pI)

42.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 42 - 130 1.9e-07 Probable lipid transfer
Hydrophob_seed PF14547 48 - 131 5e-25 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 48 - 130 1.6e-14 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00165 AT4G00165
fragaria_vesca FvH4_7g11190
malus_domestica MD07G1116600.v1.1
prunus_persica Prupe.2G139600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0349271
rosa_laevigata RLG00000028561
rosa_multiflora Rmu_sc0000827.1_g000014 Rmu_sc0002914.1_g000025
rosa_roxburghii Rroxscaffold_4G00305730
rosa_rugosa Rorug01G0202300
rosa_samantha Rh1AG219900 Rh1BG185700 Rh1CG204900 Rh1DG215400
rosa_wichuraiana Rw1G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 370
AciI CCGC 2 cut(s) 254, 363
AclWI GGATC 1 cut(s) 264
AfaI GTAC 2 cut(s) 283, 327
AfiI CCNNNNNNNGG 1 cut(s) 244
AgsI TTSAA 1 cut(s) 263
AluBI AGCT 3 cut(s) 266, 319, 342
AluI AGCT 3 cut(s) 266, 319, 342
Alw26I GTCTC 1 cut(s) 144
AlwI GGATC 1 cut(s) 264
AoxI GGCC 1 cut(s) 294
ApeKI GCWGC 1 cut(s) 266
AsuHPI GGTGA 1 cut(s) 205
BaeGI GKGCMC 1 cut(s) 375
BanI GGYRCC 1 cut(s) 370
BauI CACGAG 1 cut(s) 77
BbvI GCAGC 1 cut(s) 253
BciVI GTATCC 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 144
BfuI GTATCC 1 cut(s) 79
BisI GCNGC 1 cut(s) 267
BlsI GCNGC 1 cut(s) 268
BmiI GGNNCC 3 cut(s) 16, 84, 372
BoxI GACNNNNGTC 1 cut(s) 200
BplI GAGNNNNNCTC 2 cut(s) 141, 173
BpuEI CTTGAG 1 cut(s) 143
BsaJI CCNNGG 1 cut(s) 18
Bsc4I CCNNNNNNNGG 1 cut(s) 244
BseDI CCNNGG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 244
BseMII CTCAG 1 cut(s) 189
BseSI GKGCMC 1 cut(s) 375
BseXI GCAGC 1 cut(s) 253
BseYI CCCAGC 2 cut(s) 218, 304
BshFI GGCC 1 cut(s) 296
BshNI GGYRCC 1 cut(s) 370
BslFI GGGAC 2 cut(s) 129, 223
BslI CCNNNNNNNGG 1 cut(s) 244
BsmAI GTCTC 1 cut(s) 144
BsmFI GGGAC 2 cut(s) 129, 223
BsnI GGCC 1 cut(s) 296
Bsp1286I GDGCHC 1 cut(s) 375
Bsp143I GATC 1 cut(s) 256
BspACI CCGC 2 cut(s) 254, 363
BspANI GGCC 1 cut(s) 296
BspCNI CTCAG 1 cut(s) 190
BspLI GGNNCC 3 cut(s) 16, 84, 372
BspPI GGATC 1 cut(s) 264
BspT107I GGYRCC 1 cut(s) 370
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 1 cut(s) 256
BssSI CACGAG 1 cut(s) 77
BssT1I CCWWGG 1 cut(s) 18
Bst2BI CACGAG 1 cut(s) 77
BstC8I GCNNGC 2 cut(s) 135, 344
BstDEI CTNAG 1 cut(s) 198
BstENI CCTNNNNNAGG 1 cut(s) 242
BstKTI GATC 1 cut(s) 259
BstMAI GTCTC 1 cut(s) 144
BstMBI GATC 1 cut(s) 256
BstMWI GCNNNNNNNGC 1 cut(s) 293
BstPAI GACNNNNGTC 1 cut(s) 200
BstSLI GKGCMC 1 cut(s) 375
BstV1I GCAGC 1 cut(s) 253
BstX2I RGATCY 1 cut(s) 256
BstXI CCANNNNNNTGG 1 cut(s) 304
BstYI RGATCY 1 cut(s) 256
BsuI GTATCC 1 cut(s) 79
BsuRI GGCC 1 cut(s) 296
Cac8I GCNNGC 2 cut(s) 135, 344
Csp6I GTAC 2 cut(s) 282, 326
CviAII CATG 1 cut(s) 87
CviJI RGCY 7 cut(s) 5, 137, 266, 296, 319, 342, 381
CviKI_1 RGCY 7 cut(s) 5, 137, 266, 296, 319, 342, 381
CviQI GTAC 2 cut(s) 282, 326
DdeI CTNAG 1 cut(s) 198
DpnI GATC 1 cut(s) 258
DpnII GATC 1 cut(s) 256
EciI GGCGGA 2 cut(s) 269, 378
Eco130I CCWWGG 1 cut(s) 18
EcoNI CCTNNNNNAGG 1 cut(s) 242
EcoT14I CCWWGG 1 cut(s) 18
ErhI CCWWGG 1 cut(s) 18
FaeI CATG 1 cut(s) 90
FaiI YATR 4 cut(s) 9, 53, 88, 388
FaqI GGGAC 2 cut(s) 129, 223
FatI CATG 1 cut(s) 86
Fnu4HI GCNGC 1 cut(s) 267
Fsp4HI GCNGC 1 cut(s) 267
GluI GCNGC 1 cut(s) 267
GsaI CCCAGC 2 cut(s) 222, 308
HaeIII GGCC 1 cut(s) 296
Hin1II CATG 1 cut(s) 90
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 1 cut(s) 282
Hpy188III TCNNGA 3 cut(s) 77, 208, 260
Hpy8I GTNNAC 1 cut(s) 282
Hpy99I CGWCG 1 cut(s) 209
HpyAV CCTTC 2 cut(s) 114, 371
HpyCH4V TGCA 2 cut(s) 234, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 293
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 1 cut(s) 90
Kzo9I GATC 1 cut(s) 256
LpnPI CCDG 7 cut(s) 50, 160, 232, 236, 251, 290, 342
Lsp1109I GCAGC 1 cut(s) 253
MaeIII GTNAC 1 cut(s) 193
MalI GATC 1 cut(s) 258
MboI GATC 1 cut(s) 256
MflI RGATCY 1 cut(s) 256
MhlI GDGCHC 1 cut(s) 375
MluCI AATT 1 cut(s) 309
MnlI CCTC 9 cut(s) 73, 82, 102, 118, 123, 127, 167, 193, 217
MseI TTAA 2 cut(s) 291, 351
MwoI GCNNNNNNNGC 1 cut(s) 293
NdeII GATC 1 cut(s) 256
NlaIII CATG 1 cut(s) 90
NlaIV GGNNCC 3 cut(s) 16, 84, 372
NmuCI GTSAC 1 cut(s) 193
PkrI GCNGC 1 cut(s) 268
PshAI GACNNNNGTC 1 cut(s) 200
PspFI CCCAGC 2 cut(s) 218, 304
PspN4I GGNNCC 3 cut(s) 16, 84, 372
PsuI RGATCY 1 cut(s) 256
RsaI GTAC 2 cut(s) 283, 327
RsaNI GTAC 2 cut(s) 282, 326
SaqAI TTAA 2 cut(s) 291, 351
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 1 cut(s) 256
SduI GDGCHC 1 cut(s) 375
SetI ASST 7 cut(s) 84, 204, 268, 321, 331, 344, 372
SmlI CTYRAG 1 cut(s) 158
SmoI CTYRAG 1 cut(s) 158
Sse9I AATT 1 cut(s) 309
SsiI CCGC 2 cut(s) 254, 363
StyI CCWWGG 1 cut(s) 18
TasI AATT 1 cut(s) 309
TatI WGTACW 1 cut(s) 281
Tru1I TTAA 2 cut(s) 291, 351
Tru9I TTAA 2 cut(s) 291, 351
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 1 cut(s) 266
Tsp45I GTSAC 1 cut(s) 193
XagI CCTNNNNNAGG 1 cut(s) 242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.