Rh1BG185700

lipid-binding protein

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Reverse (-)
30011009 .. 30011707
699 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG185700.1

Sequence Viewer

Length: 393 bp
ATGGCTTGTAGGGGTTCCACGGCAGTTGCTCTTATCATTCTCCTTGACATCATATTTTTCTCTCTGGTATCCTCTCACGACGTTCCATGTCCTACAAATCCTTCTTCTCCTCCCTCTATTCCCAAGAAGCAAGCCAAGTGTCCCAGAGACACCCTCAAGTTCGGGATCTGTGGGAGTTGGTTAGGATTGGTGACTGAGGTCGTCGGGACGAAACCCAGCGAGGAATGTTGCACCCTGATAAAGGGTCTGGCGGATCTTGAAGCTGCATTGTGTCTGTGTACTGCTATTAAGGCCAATGTGCTGGGAATTGTCAAGCTCAAAGTACCTGTTGCTATTAGCTTGCTTGTTAATGCTTGTGGGGGAAAGGTGCCCGAAGGCTTTGTATGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

130

Amino Acids

13.49

Weight (kDa)

8.35

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LTP_2 PF14368 41 - 129 2e-07 Probable lipid transfer
Hydrophob_seed PF14547 47 - 130 1.2e-25 Hydrophobic seed protein
Tryp_alpha_amyl PF00234 47 - 129 4.1e-14 Protease inhibitor/seed storage/LTP family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0015131)

Species Orthologous Gene IDs
arabidopsis_thaliana AT4G00165 AT4G00165
fragaria_vesca FvH4_7g11190
malus_domestica MD07G1116600.v1.1
prunus_persica Prupe.2G139600_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0349271
rosa_laevigata RLG00000028561
rosa_multiflora Rmu_sc0000827.1_g000014 Rmu_sc0002914.1_g000025
rosa_roxburghii Rroxscaffold_4G00305730
rosa_rugosa Rorug01G0202300
rosa_samantha Rh1AG219900 Rh1BG185700 Rh1CG204900 Rh1DG215400
rosa_wichuraiana Rw1G018660

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 367
AciI CCGC 1 cut(s) 251
AclWI GGATC 2 cut(s) 173, 261
AfaI GTAC 2 cut(s) 280, 324
AfiI CCNNNNNNNGG 1 cut(s) 241
AgsI TTSAA 1 cut(s) 260
AluBI AGCT 3 cut(s) 263, 316, 339
AluI AGCT 3 cut(s) 263, 316, 339
Alw26I GTCTC 1 cut(s) 141
AlwI GGATC 2 cut(s) 173, 261
AoxI GGCC 1 cut(s) 291
ApeKI GCWGC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 202
BaeGI GKGCMC 1 cut(s) 372
BanI GGYRCC 1 cut(s) 367
BbvI GCAGC 1 cut(s) 250
BceAI ACGGC 1 cut(s) 36
BciVI GTATCC 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 141
BfuI GTATCC 1 cut(s) 79
BisI GCNGC 1 cut(s) 264
BlsI GCNGC 1 cut(s) 265
BmiI GGNNCC 2 cut(s) 16, 369
BoxI GACNNNNGTC 1 cut(s) 197
BplI GAGNNNNNCTC 2 cut(s) 138, 170
BpuEI CTTGAG 1 cut(s) 140
BsaJI CCNNGG 1 cut(s) 18
Bsc4I CCNNNNNNNGG 1 cut(s) 241
BseDI CCNNGG 1 cut(s) 18
BseLI CCNNNNNNNGG 1 cut(s) 241
BseMII CTCAG 1 cut(s) 186
BseRI GAGGAG 1 cut(s) 99
BseSI GKGCMC 1 cut(s) 372
BseXI GCAGC 1 cut(s) 250
BseYI CCCAGC 2 cut(s) 215, 301
BshFI GGCC 1 cut(s) 293
BshNI GGYRCC 1 cut(s) 367
BslFI GGGAC 2 cut(s) 126, 220
BslI CCNNNNNNNGG 1 cut(s) 241
BsmAI GTCTC 1 cut(s) 141
BsmFI GGGAC 2 cut(s) 126, 220
BsnI GGCC 1 cut(s) 293
Bsp1286I GDGCHC 1 cut(s) 372
Bsp143I GATC 2 cut(s) 165, 253
BspACI CCGC 1 cut(s) 251
BspANI GGCC 1 cut(s) 293
BspCNI CTCAG 1 cut(s) 187
BspLI GGNNCC 2 cut(s) 16, 369
BspPI GGATC 2 cut(s) 173, 261
BspT107I GGYRCC 1 cut(s) 367
BssECI CCNNGG 1 cut(s) 18
BssMI GATC 2 cut(s) 165, 253
BstC8I GCNNGC 2 cut(s) 132, 341
BstDEI CTNAG 1 cut(s) 195
BstDSI CCRYGG 1 cut(s) 18
BstENI CCTNNNNNAGG 1 cut(s) 239
BstKTI GATC 2 cut(s) 168, 256
BstMAI GTCTC 1 cut(s) 141
BstMBI GATC 2 cut(s) 165, 253
BstMWI GCNNNNNNNGC 1 cut(s) 290
BstPAI GACNNNNGTC 1 cut(s) 197
BstSLI GKGCMC 1 cut(s) 372
BstV1I GCAGC 1 cut(s) 250
BstX2I RGATCY 2 cut(s) 165, 253
BstXI CCANNNNNNTGG 1 cut(s) 301
BstYI RGATCY 2 cut(s) 165, 253
BsuI GTATCC 1 cut(s) 79
BsuRI GGCC 1 cut(s) 293
BtgI CCRYGG 1 cut(s) 18
Cac8I GCNNGC 2 cut(s) 132, 341
Csp6I GTAC 2 cut(s) 279, 323
CspCI CAANNNNNGTGG 2 cut(s) 7, 42
CviAII CATG 1 cut(s) 87
CviJI RGCY 7 cut(s) 5, 134, 263, 293, 316, 339, 378
CviKI_1 RGCY 7 cut(s) 5, 134, 263, 293, 316, 339, 378
CviQI GTAC 2 cut(s) 279, 323
DdeI CTNAG 1 cut(s) 195
DpnI GATC 2 cut(s) 167, 255
DpnII GATC 2 cut(s) 165, 253
EciI GGCGGA 1 cut(s) 266
EcoNI CCTNNNNNAGG 1 cut(s) 239
FaeI CATG 1 cut(s) 90
FaiI YATR 3 cut(s) 53, 88, 385
FaqI GGGAC 2 cut(s) 126, 220
FatI CATG 1 cut(s) 86
Fnu4HI GCNGC 1 cut(s) 264
Fsp4HI GCNGC 1 cut(s) 264
GluI GCNGC 1 cut(s) 264
GsaI CCCAGC 2 cut(s) 219, 305
HaeIII GGCC 1 cut(s) 293
Hin1II CATG 1 cut(s) 90
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 1 cut(s) 279
Hpy188III TCNNGA 4 cut(s) 77, 163, 205, 257
Hpy8I GTNNAC 1 cut(s) 279
Hpy99I CGWCG 2 cut(s) 83, 206
HpyAV CCTTC 2 cut(s) 111, 368
HpyCH4IV ACGT 1 cut(s) 81
HpyCH4V TGCA 2 cut(s) 231, 266
HpyF10VI GCNNNNNNNGC 1 cut(s) 290
HpyF3I CTNAG 1 cut(s) 195
HpySE526I ACGT 1 cut(s) 81
Hsp92II CATG 1 cut(s) 90
Kzo9I GATC 2 cut(s) 165, 253
LpnPI CCDG 7 cut(s) 50, 157, 229, 233, 248, 287, 339
Lsp1109I GCAGC 1 cut(s) 250
MaeII ACGT 1 cut(s) 81
MaeIII GTNAC 1 cut(s) 190
MalI GATC 2 cut(s) 167, 255
MboI GATC 2 cut(s) 165, 253
MboII GAAGA 1 cut(s) 96
MflI RGATCY 2 cut(s) 165, 253
MhlI GDGCHC 1 cut(s) 372
MluCI AATT 1 cut(s) 306
MnlI CCTC 6 cut(s) 82, 120, 124, 164, 190, 214
MseI TTAA 2 cut(s) 288, 348
MwoI GCNNNNNNNGC 1 cut(s) 290
NdeII GATC 2 cut(s) 165, 253
NlaIII CATG 1 cut(s) 90
NlaIV GGNNCC 2 cut(s) 16, 369
NmuCI GTSAC 1 cut(s) 190
PkrI GCNGC 1 cut(s) 265
PshAI GACNNNNGTC 1 cut(s) 197
PspFI CCCAGC 2 cut(s) 215, 301
PspN4I GGNNCC 2 cut(s) 16, 369
PsuI RGATCY 2 cut(s) 165, 253
RsaI GTAC 2 cut(s) 280, 324
RsaNI GTAC 2 cut(s) 279, 323
SaqAI TTAA 2 cut(s) 288, 348
SatI GCNGC 1 cut(s) 264
Sau3AI GATC 2 cut(s) 165, 253
SduI GDGCHC 1 cut(s) 372
SetI ASST 7 cut(s) 84, 201, 265, 318, 328, 341, 369
SmlI CTYRAG 1 cut(s) 155
SmoI CTYRAG 1 cut(s) 155
Sse9I AATT 1 cut(s) 306
SsiI CCGC 1 cut(s) 251
TaiI ACGT 1 cut(s) 84
TasI AATT 1 cut(s) 306
TatI WGTACW 1 cut(s) 278
Tru1I TTAA 2 cut(s) 288, 348
Tru9I TTAA 2 cut(s) 288, 348
TseFI GTSAC 1 cut(s) 190
TseI GCWGC 1 cut(s) 263
Tsp45I GTSAC 1 cut(s) 190
XagI CCTNNNNNAGG 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.