Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0019775

Physical Location & Seq

Genomic Coordinates Reverse (-)

19848398 .. 19851458

Gene Structure 3061 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1136400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGGCTACACTAAGGATGACGGCCTTGGTGCTGAGATTGTTGGTGAACCATGGCTACACTAGGGGTGACGGCCTTGGTGCTGAGATTGTTGGCACTTTTGTTCTTGTGTACACTGTTTTCTCTGCCACTGATGCCAAGAGAAACGCCAGAGACTCTCATGTCCCTGCTCCACTCCCCATTGGGTTTGCAGTGTTTCTGGTTCATTTGGCAACCATCCCCATCACTGGAACCGGCATAAACCCTGCTAGGAGCCTTGGGGCTGCCATCATCTACAAGTACAACAAGGACCATGCATGGGATGATCATTGGATCTTCTGGGTTGGACCATTCATTGGAGCTGCACTTGCTGCACTCTACCATCAGATAGTCATCAGAGCCATCCCATTCAAGACCAGAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005773 GO:0005886 GO:0005887 GO:0005911 GO:0006810 GO:0006811 GO:0006833 GO:0006950 GO:0008150 GO:0009414 GO:0009415 GO:0009506 GO:0009507 GO:0009526 GO:0009536 GO:0009628 GO:0009941 GO:0010035 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0030054 GO:0031224 GO:0031226 GO:0031967 GO:0031975 GO:0034220 GO:0042044 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044459 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055044 GO:0055085 GO:0071944 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

134

Amino Acids

14.57

Weight (kDa)

9.69

Isoelectric Point (pI)

22.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MIP	PF00230	13 - 120	1.8e-38	Major intrinsic protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0019775)

Species	Orthologous Gene IDs
malus_domestica	MD00G1173200.v1.1 MD07G1136400.v1.1
pyrus_communis	pycom07g13370
rosa_chinensis	RchiOBHm_Chr2g0098661
rosa_multiflora	Rmu_co8012854.1_g000001
rosa_samantha	Rh2AG121800 Rh2CG126400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AccB7I	CCANNNNNTGG	1 cut(s)	332
AclWI	GGATC	1 cut(s)	317
AfaI	GTAC	2 cut(s)	110, 278
AfiI	CCNNNNNNNGG	3 cut(s)	224, 295, 332
AgsI	TTSAA	1 cut(s)	388
AluBI	AGCT	1 cut(s)	338
AluI	AGCT	1 cut(s)	338
Alw26I	GTCTC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	317
AoxI	GGCC	2 cut(s)	21, 70
ApeKI	GCWGC	3 cut(s)	260, 338, 347
AspS9I	GGNCC	2 cut(s)	286, 323
AsuHPI	GGTGA	2 cut(s)	55, 77
AvaII	GGWCC	2 cut(s)	286, 323
BbvI	GCAGC	3 cut(s)	247, 325, 334
BccI	CCATC	5 cut(s)	221, 227, 272, 366, 386
BceAI	ACGGC	2 cut(s)	36, 85
BclI	TGATCA	1 cut(s)	301
BcoDI	GTCTC	1 cut(s)	144
BfaI	CTAG	2 cut(s)	60, 246
BisI	GCNGC	3 cut(s)	261, 339, 348
BlsI	GCNGC	3 cut(s)	262, 340, 349
Bme18I	GGWCC	2 cut(s)	286, 323
BmgT120I	GGNCC	2 cut(s)	286, 323
BmiI	GGNNCC	2 cut(s)	229, 251
BmsI	GCATC	1 cut(s)	121
BsaBI	GATNNNNATC	1 cut(s)	368
BsaJI	CCNNGG	4 cut(s)	24, 49, 73, 253
Bsc4I	CCNNNNNNNGG	3 cut(s)	224, 295, 332
Bse118I	RCCGGY	1 cut(s)	230
Bse1I	ACTGG	1 cut(s)	229
Bse8I	GATNNNNATC	1 cut(s)	368
BseDI	CCNNGG	4 cut(s)	24, 49, 73, 253
BseGI	GGATG	4 cut(s)	21, 213, 304, 378
BseJI	GATNNNNATC	1 cut(s)	368
BseLI	CCNNNNNNNGG	3 cut(s)	224, 295, 332
BseMII	CTCAG	2 cut(s)	23, 72
BseNI	ACTGG	1 cut(s)	229
BseXI	GCAGC	3 cut(s)	247, 325, 334
BsgI	GTGCAG	2 cut(s)	324, 333
BshFI	GGCC	2 cut(s)	23, 72
BsiSI	CCGG	1 cut(s)	231
BslFI	GGGAC	1 cut(s)	146
BslI	CCNNNNNNNGG	3 cut(s)	224, 295, 332
BsmAI	GTCTC	1 cut(s)	144
BsmFI	GGGAC	1 cut(s)	146
BsnI	GGCC	2 cut(s)	23, 72
Bsp1407I	TGTACA	1 cut(s)	108
Bsp143I	GATC	2 cut(s)	301, 309
Bsp19I	CCATGG	1 cut(s)	49
BspANI	GGCC	2 cut(s)	23, 72
BspCNI	CTCAG	2 cut(s)	24, 73
BspLI	GGNNCC	2 cut(s)	229, 251
BspPI	GGATC	1 cut(s)	317
BsrFI	RCCGGY	1 cut(s)	230
BsrGI	TGTACA	1 cut(s)	108
BsrI	ACTGG	1 cut(s)	229
BssAI	RCCGGY	1 cut(s)	230
BssECI	CCNNGG	4 cut(s)	24, 49, 73, 253
BssMI	GATC	2 cut(s)	301, 309
BssT1I	CCWWGG	4 cut(s)	24, 49, 73, 253
Bst4CI	ACNGT	1 cut(s)	115
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstAUI	TGTACA	1 cut(s)	108
BstDEI	CTNAG	3 cut(s)	11, 32, 81
BstDSI	CCRYGG	1 cut(s)	49
BstF5I	GGATG	4 cut(s)	21, 213, 304, 378
BstKTI	GATC	2 cut(s)	304, 312
BstMAI	GTCTC	1 cut(s)	144
BstMBI	GATC	2 cut(s)	301, 309
BstMWI	GCNNNNNNNGC	3 cut(s)	131, 344, 347
BstV1I	GCAGC	3 cut(s)	247, 325, 334
BstX2I	RGATCY	1 cut(s)	309
BstYI	RGATCY	1 cut(s)	309
BsuRI	GGCC	2 cut(s)	23, 72
BtgI	CCRYGG	1 cut(s)	49
BtsCI	GGATG	4 cut(s)	21, 213, 304, 378
BtsI	GCAGTG	1 cut(s)	195
BtsIMutI	CAGTG	4 cut(s)	111, 126, 195, 222
Cfr10I	RCCGGY	1 cut(s)	230
Cfr13I	GGNCC	2 cut(s)	286, 323
Csp6I	GTAC	2 cut(s)	109, 277
CviAII	CATG	4 cut(s)	50, 158, 290, 294
CviJI	RGCY	8 cut(s)	5, 23, 54, 72, 252, 260, 338, 377
CviKI_1	RGCY	8 cut(s)	5, 23, 54, 72, 252, 260, 338, 377
CviQI	GTAC	2 cut(s)	109, 277
DdeI	CTNAG	3 cut(s)	11, 32, 81
DpnI	GATC	2 cut(s)	303, 311
DpnII	GATC	2 cut(s)	301, 309
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
Eco130I	CCWWGG	4 cut(s)	24, 49, 73, 253
Eco47I	GGWCC	2 cut(s)	286, 323
EcoT14I	CCWWGG	4 cut(s)	24, 49, 73, 253
EcoT22I	ATGCAT	1 cut(s)	295
ErhI	CCWWGG	4 cut(s)	24, 49, 73, 253
FaeI	CATG	4 cut(s)	53, 161, 293, 297
FaiI	YATR	5 cut(s)	51, 159, 236, 291, 295
FaqI	GGGAC	1 cut(s)	146
FatI	CATG	4 cut(s)	49, 157, 289, 293
FbaI	TGATCA	1 cut(s)	301
Fnu4HI	GCNGC	3 cut(s)	261, 339, 348
FokI	GGATG	4 cut(s)	28, 200, 311, 365
Fsp4HI	GCNGC	3 cut(s)	261, 339, 348
FspBI	CTAG	2 cut(s)	60, 246
GluI	GCNGC	3 cut(s)	261, 339, 348
HaeIII	GGCC	2 cut(s)	23, 72
HapII	CCGG	1 cut(s)	231
Hin1II	CATG	4 cut(s)	53, 161, 293, 297
HinfI	GANTC	1 cut(s)	152
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	2 cut(s)	55, 77
Hpy166II	GTNNAC	3 cut(s)	46, 109, 111
Hpy188I	TCNGA	2 cut(s)	363, 374
Hpy188III	TCNNGA	1 cut(s)	388
Hpy8I	GTNNAC	3 cut(s)	46, 109, 111
HpyCH4III	ACNGT	1 cut(s)	115
HpyCH4V	TGCA	4 cut(s)	188, 293, 341, 350
HpyF10VI	GCNNNNNNNGC	3 cut(s)	131, 344, 347
HpyF3I	CTNAG	3 cut(s)	11, 32, 81
Hsp92II	CATG	4 cut(s)	53, 161, 293, 297
Ksp22I	TGATCA	1 cut(s)	301
Kzo9I	GATC	2 cut(s)	301, 309
LmnI	GCTCC	3 cut(s)	172, 249, 335
LpnPI	CCDG	7 cut(s)	160, 177, 182, 210, 244, 255, 301
Lsp1109I	GCAGC	3 cut(s)	247, 325, 334
LweI	GCATC	1 cut(s)	121
MaeI	CTAG	2 cut(s)	60, 246
MaeIII	GTNAC	1 cut(s)	65
MalI	GATC	2 cut(s)	303, 311
MboI	GATC	2 cut(s)	301, 309
MboII	GAAGA	1 cut(s)	304
MflI	RGATCY	1 cut(s)	309
MlyI	GAGTC	1 cut(s)	146
MmeI	TCCRAC	1 cut(s)	301
Mph1103I	ATGCAT	1 cut(s)	295
MspI	CCGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	3 cut(s)	131, 344, 347
NcoI	CCATGG	1 cut(s)	49
NdeII	GATC	2 cut(s)	301, 309
NlaIII	CATG	4 cut(s)	53, 161, 293, 297
NlaIV	GGNNCC	2 cut(s)	229, 251
NmuCI	GTSAC	1 cut(s)	65
NsiI	ATGCAT	1 cut(s)	295
PflMI	CCANNNNNTGG	1 cut(s)	332
PkrI	GCNGC	3 cut(s)	262, 340, 349
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PspN4I	GGNNCC	2 cut(s)	229, 251
PspPI	GGNCC	2 cut(s)	286, 323
PsrI	GAACNNNNNNTAC	2 cut(s)	38, 70
PsuI	RGATCY	1 cut(s)	309
RsaI	GTAC	2 cut(s)	110, 278
RsaNI	GTAC	2 cut(s)	109, 277
SatI	GCNGC	3 cut(s)	261, 339, 348
Sau3AI	GATC	2 cut(s)	301, 309
Sau96I	GGNCC	2 cut(s)	286, 323
SchI	GAGTC	1 cut(s)	146
SetI	ASST	1 cut(s)	340
SfaNI	GCATC	1 cut(s)	121
SinI	GGWCC	2 cut(s)	286, 323
SspMI	CTAG	2 cut(s)	60, 246
StyI	CCWWGG	4 cut(s)	24, 49, 73, 253
TaaI	ACNGT	1 cut(s)	115
TatI	WGTACW	2 cut(s)	108, 276
TscAI	CASTG	4 cut(s)	118, 133, 195, 229
TseFI	GTSAC	1 cut(s)	65
TseI	GCWGC	3 cut(s)	260, 338, 347
Tsp45I	GTSAC	1 cut(s)	65
TspDTI	ATGAA	2 cut(s)	191, 319
TspRI	CASTG	4 cut(s)	118, 133, 195, 229
Van91I	CCANNNNNTGG	1 cut(s)	332
VpaK11BI	GGWCC	2 cut(s)	286, 323
XspI	CTAG	2 cut(s)	60, 246
Zsp2I	ATGCAT	1 cut(s)	295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.