Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8012854.1

Orthogroup ID

OG0019775

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 401

Gene Structure 401 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8012854.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 234 bp

attttggccccgttgccaattgggttcgccgtgttcttggtgcacttggctaccatccccattaccggaaccggtattaacccagctaggagtcttggtgcagccatcatcttcaacaaggacagagcctgggatgaccaatggattttctgggttggaccattcattggagcagcacttgcagctttataccatgtggttgtgatcagagccattcctttcaaatccaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005372 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006811 GO:0006833 GO:0008150 GO:0015250 GO:0015267 GO:0015318 GO:0016020 GO:0016021 GO:0022803 GO:0022838 GO:0022857 GO:0031224 GO:0031226 GO:0034220 GO:0042044 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MIP

Protein Analysis

77

Amino Acids

8.34

Weight (kDa)

9.99

Isoelectric Point (pI)

22.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0019775)

Species	Orthologous Gene IDs
malus_domestica	MD00G1173200.v1.1 MD07G1136400.v1.1
pyrus_communis	pycom07g13370
rosa_chinensis	RchiOBHm_Chr2g0098661
rosa_multiflora	Rmu_co8012854.1_g000001
rosa_samantha	Rh2AG121800 Rh2CG126400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	167
AfiI	CCNNNNNNNGG	2 cut(s)	65, 167
AgeI	ACCGGT	1 cut(s)	71
AgsI	TTSAA	2 cut(s)	115, 223
AjnI	CCWGG	1 cut(s)	128
AluBI	AGCT	2 cut(s)	86, 185
AluI	AGCT	2 cut(s)	86, 185
Alw21I	GWGCWC	1 cut(s)	45
Alw44I	GTGCAC	1 cut(s)	41
AlwNI	CAGNNNCTG	1 cut(s)	129
AoxI	GGCC	1 cut(s)	6
ApaLI	GTGCAC	1 cut(s)	41
ApeKI	GCWGC	3 cut(s)	101, 173, 182
AsiGI	ACCGGT	1 cut(s)	71
AspS9I	GGNCC	2 cut(s)	7, 158
AvaII	GGWCC	1 cut(s)	158
BaeGI	GKGCMC	1 cut(s)	45
Bbv12I	GWGCWC	1 cut(s)	45
BbvI	GCAGC	3 cut(s)	113, 185, 194
BccI	CCATC	2 cut(s)	62, 113
BceAI	ACGGC	1 cut(s)	14
BciT130I	CCWGG	1 cut(s)	130
BclI	TGATCA	1 cut(s)	204
BfaI	CTAG	1 cut(s)	87
BisI	GCNGC	3 cut(s)	102, 174, 183
BlsI	GCNGC	3 cut(s)	103, 175, 184
Bme1390I	CCNGG	1 cut(s)	130
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	2 cut(s)	7, 158
BmiI	GGNNCC	2 cut(s)	9, 70
BmrFI	CCNGG	1 cut(s)	130
BsaJI	CCNNGG	1 cut(s)	129
BsaWI	WCCGGW	2 cut(s)	65, 71
BsaXI	ACNNNNNCTCC	2 cut(s)	82, 112
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 167
Bse118I	RCCGGY	1 cut(s)	71
BseBI	CCWGG	1 cut(s)	130
BseDI	CCNNGG	1 cut(s)	129
BseGI	GGATG	2 cut(s)	54, 139
BseLI	CCNNNNNNNGG	2 cut(s)	65, 167
BseSI	GKGCMC	1 cut(s)	45
BseXI	GCAGC	3 cut(s)	113, 185, 194
BseYI	CCCAGC	1 cut(s)	82
BsgI	GTGCAG	1 cut(s)	120
BshFI	GGCC	1 cut(s)	8
BshTI	ACCGGT	1 cut(s)	71
BsiHKAI	GWGCWC	1 cut(s)	45
BsiSI	CCGG	2 cut(s)	66, 72
BslI	CCNNNNNNNGG	2 cut(s)	65, 167
BsnI	GGCC	1 cut(s)	8
Bsp1286I	GDGCHC	1 cut(s)	45
Bsp143I	GATC	1 cut(s)	204
BspANI	GGCC	1 cut(s)	8
BspLI	GGNNCC	2 cut(s)	9, 70
BsrFI	RCCGGY	1 cut(s)	71
BssAI	RCCGGY	1 cut(s)	71
BssECI	CCNNGG	1 cut(s)	129
BssMI	GATC	1 cut(s)	204
Bst2UI	CCWGG	1 cut(s)	130
BstAPI	GCANNNNNTGC	1 cut(s)	179
BstF5I	GGATG	2 cut(s)	54, 139
BstKTI	GATC	1 cut(s)	207
BstMBI	GATC	1 cut(s)	204
BstMWI	GCNNNNNNNGC	2 cut(s)	179, 182
BstNI	CCWGG	1 cut(s)	130
BstSCI	CCNGG	1 cut(s)	128
BstSLI	GKGCMC	1 cut(s)	45
BstV1I	GCAGC	3 cut(s)	113, 185, 194
BsuRI	GGCC	1 cut(s)	8
BtsCI	GGATG	2 cut(s)	54, 139
CaiI	CAGNNNCTG	1 cut(s)	129
Cfr10I	RCCGGY	1 cut(s)	71
Cfr13I	GGNCC	2 cut(s)	7, 158
CspAI	ACCGGT	1 cut(s)	71
CviAII	CATG	1 cut(s)	194
CviJI	RGCY	7 cut(s)	8, 50, 86, 104, 128, 185, 212
CviKI_1	RGCY	7 cut(s)	8, 50, 86, 104, 128, 185, 212
DpnI	GATC	1 cut(s)	206
DpnII	GATC	1 cut(s)	204
Eco47I	GGWCC	1 cut(s)	158
EcoRII	CCWGG	1 cut(s)	128
FaeI	CATG	1 cut(s)	197
FaiI	YATR	2 cut(s)	190, 195
FatI	CATG	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	204
Fnu4HI	GCNGC	3 cut(s)	102, 174, 183
FokI	GGATG	2 cut(s)	41, 146
Fsp4HI	GCNGC	3 cut(s)	102, 174, 183
FspBI	CTAG	1 cut(s)	87
GluI	GCNGC	3 cut(s)	102, 174, 183
GsaI	CCCAGC	1 cut(s)	86
HaeIII	GGCC	1 cut(s)	8
HapII	CCGG	2 cut(s)	66, 72
Hin1II	CATG	1 cut(s)	197
HinfI	GANTC	1 cut(s)	91
HpaII	CCGG	2 cut(s)	66, 72
Hpy166II	GTNNAC	1 cut(s)	43
Hpy188I	TCNGA	1 cut(s)	209
Hpy8I	GTNNAC	1 cut(s)	43
HpyCH4V	TGCA	3 cut(s)	43, 101, 182
HpyF10VI	GCNNNNNNNGC	2 cut(s)	179, 182
Hsp92II	CATG	1 cut(s)	197
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	1 cut(s)	204
LmnI	GCTCC	1 cut(s)	170
LpnPI	CCDG	6 cut(s)	79, 85, 96, 115, 136, 142
Lsp1109I	GCAGC	3 cut(s)	113, 185, 194
MaeI	CTAG	1 cut(s)	87
MalI	GATC	1 cut(s)	206
MboI	GATC	1 cut(s)	204
MboII	GAAGA	1 cut(s)	103
MfeI	CAATTG	1 cut(s)	18
MhlI	GDGCHC	1 cut(s)	45
MluCI	AATT	1 cut(s)	18
MlyI	GAGTC	1 cut(s)	100
MmeI	TCCRAC	1 cut(s)	136
MseI	TTAA	1 cut(s)	78
MspI	CCGG	2 cut(s)	66, 72
MspR9I	CCNGG	1 cut(s)	130
MunI	CAATTG	1 cut(s)	18
MvaI	CCWGG	1 cut(s)	130
MwoI	GCNNNNNNNGC	2 cut(s)	179, 182
NdeII	GATC	1 cut(s)	204
NlaIII	CATG	1 cut(s)	197
NlaIV	GGNNCC	2 cut(s)	9, 70
PflMI	CCANNNNNTGG	1 cut(s)	167
PinAI	ACCGGT	1 cut(s)	71
PkrI	GCNGC	3 cut(s)	103, 175, 184
PleI	GAGTC	1 cut(s)	99
PpsI	GAGTC	1 cut(s)	99
Psp6I	CCWGG	1 cut(s)	128
PspFI	CCCAGC	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	128
PspN4I	GGNNCC	2 cut(s)	9, 70
PspPI	GGNCC	2 cut(s)	7, 158
PstNI	CAGNNNCTG	1 cut(s)	129
SaqAI	TTAA	1 cut(s)	78
SatI	GCNGC	3 cut(s)	102, 174, 183
Sau3AI	GATC	1 cut(s)	204
Sau96I	GGNCC	2 cut(s)	7, 158
SchI	GAGTC	1 cut(s)	100
ScrFI	CCNGG	1 cut(s)	130
SduI	GDGCHC	1 cut(s)	45
SetI	ASST	2 cut(s)	88, 187
SinI	GGWCC	1 cut(s)	158
Sse9I	AATT	1 cut(s)	18
SspMI	CTAG	1 cut(s)	87
StyD4I	CCNGG	1 cut(s)	128
TasI	AATT	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	78
Tru9I	TTAA	1 cut(s)	78
TseI	GCWGC	3 cut(s)	101, 173, 182
TspDTI	ATGAA	1 cut(s)	154
Van91I	CCANNNNNTGG	1 cut(s)	167
VneI	GTGCAC	1 cut(s)	41
VpaK11BI	GGWCC	1 cut(s)	158
XspI	CTAG	1 cut(s)	87

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.