Rh2CG126400

Belongs to the MIP aquaporin (TC 1.A.8) family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0019775
Physical Location & Seq
Reverse (-)
11267925 .. 11268925
1001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG126400.1

Sequence Viewer

Length: 375 bp
ATGTCACGGTTGCCACCATCATCGGACACAAGAAGGAAGCTGCTTAGTGTGACGGCGTTGGTGTTCTTGGCATTAATTGCCTGGGCCTTCGGTGGCATGATCTTCATCCTGGTTTACTCCATCGCTAGAATCTCAGGTATTGGTTCCATTACCAATAGGGTTTGCTGTGTTTATGGTTCACCTGGCCACCATTACCCTGCTAGGAGTTTTGCTGCTGCTGTAATCTACAACAATGACAAAGTCTGGGACGACCAATGGATATTCTGGGTCGGACCATTCATTGGAGCTCTGATAGCAGCAGCTTATAACCAGTACGTACTGAGGGCATCAGCTAGTAAAGCCTTCAGATCGTTCCACAACAATTCCACCAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
MIP

Protein Analysis

124

Amino Acids

13.72

Weight (kDa)

9.93

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MIP PF00230 66 - 101 9e-11 Major intrinsic protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0019775)

Species Orthologous Gene IDs
malus_domestica MD00G1173200.v1.1 MD07G1136400.v1.1
pyrus_communis pycom07g13370
rosa_chinensis RchiOBHm_Chr2g0098661
rosa_multiflora Rmu_co8012854.1_g000001
rosa_samantha Rh2AG121800 Rh2CG126400

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 306
AccB7I CCANNNNNTGG 1 cut(s) 281
AcoI YGGCCR 1 cut(s) 184
AcuI CTGAAG 1 cut(s) 328
AfaI GTAC 2 cut(s) 314, 318
AfiI CCNNNNNNNGG 1 cut(s) 281
AjnI CCWGG 3 cut(s) 80, 108, 181
AluBI AGCT 4 cut(s) 40, 287, 302, 332
AluI AGCT 4 cut(s) 40, 287, 302, 332
Alw21I GWGCWC 1 cut(s) 289
AoxI GGCC 2 cut(s) 84, 184
ApeKI GCWGC 5 cut(s) 40, 212, 215, 296, 299
AseI ATTAAT 1 cut(s) 74
AspS9I GGNCC 2 cut(s) 84, 272
AsuHPI GGTGA 1 cut(s) 171
AvaII GGWCC 1 cut(s) 272
BalI TGGCCA 1 cut(s) 186
BanII GRGCYC 1 cut(s) 289
Bbv12I GWGCWC 1 cut(s) 289
BbvI GCAGC 5 cut(s) 27, 199, 202, 308, 311
BccI CCATC 2 cut(s) 25, 128
BceAI ACGGC 1 cut(s) 69
BciT130I CCWGG 3 cut(s) 82, 110, 183
BfaI CTAG 3 cut(s) 126, 201, 333
BisI GCNGC 5 cut(s) 41, 213, 216, 297, 300
BlsI GCNGC 5 cut(s) 42, 214, 217, 298, 301
Bme1390I CCNGG 3 cut(s) 82, 110, 183
Bme18I GGWCC 1 cut(s) 272
BmgT120I GGNCC 2 cut(s) 84, 272
BmiI GGNNCC 1 cut(s) 145
BmrFI CCNGG 3 cut(s) 82, 110, 183
BmsI GCATC 1 cut(s) 335
BsaAI YACGTR 1 cut(s) 316
BsaBI GATNNNNATC 1 cut(s) 104
BsaJI CCNNGG 1 cut(s) 81
Bsc4I CCNNNNNNNGG 1 cut(s) 281
Bse1I ACTGG 1 cut(s) 310
Bse8I GATNNNNATC 1 cut(s) 104
BseBI CCWGG 3 cut(s) 82, 110, 183
BseDI CCNNGG 1 cut(s) 81
BseGI GGATG 1 cut(s) 105
BseJI GATNNNNATC 1 cut(s) 104
BseLI CCNNNNNNNGG 1 cut(s) 281
BseMII CTCAG 2 cut(s) 147, 311
BseNI ACTGG 1 cut(s) 310
BseXI GCAGC 5 cut(s) 27, 199, 202, 308, 311
BshFI GGCC 2 cut(s) 86, 186
BsiHKAI GWGCWC 1 cut(s) 289
BslFI GGGAC 1 cut(s) 260
BslI CCNNNNNNNGG 1 cut(s) 281
BsmFI GGGAC 1 cut(s) 260
BsnI GGCC 2 cut(s) 86, 186
Bsp1286I GDGCHC 1 cut(s) 289
Bsp143I GATC 2 cut(s) 99, 347
BspANI GGCC 2 cut(s) 86, 186
BspCNI CTCAG 2 cut(s) 146, 312
BspLI GGNNCC 1 cut(s) 145
BsrI ACTGG 1 cut(s) 310
BssECI CCNNGG 1 cut(s) 81
BssMI GATC 2 cut(s) 99, 347
Bst2UI CCWGG 3 cut(s) 82, 110, 183
Bst4CI ACNGT 1 cut(s) 9
BstAPI GCANNNNNTGC 1 cut(s) 77
BstBAI YACGTR 1 cut(s) 316
BstDEI CTNAG 3 cut(s) 44, 133, 320
BstF5I GGATG 1 cut(s) 105
BstKTI GATC 2 cut(s) 102, 350
BstMBI GATC 2 cut(s) 99, 347
BstMWI GCNNNNNNNGC 3 cut(s) 77, 293, 338
BstNI CCWGG 3 cut(s) 82, 110, 183
BstSCI CCNGG 3 cut(s) 80, 108, 181
BstSNI TACGTA 1 cut(s) 316
BstV1I GCAGC 5 cut(s) 27, 199, 202, 308, 311
BsuRI GGCC 2 cut(s) 86, 186
BtgZI GCGATG 1 cut(s) 106
BtsCI GGATG 1 cut(s) 105
Cfr13I GGNCC 2 cut(s) 84, 272
Csp6I GTAC 2 cut(s) 313, 317
CviAII CATG 1 cut(s) 97
CviJI RGCY 7 cut(s) 40, 86, 186, 287, 302, 332, 341
CviKI_1 RGCY 7 cut(s) 40, 86, 186, 287, 302, 332, 341
CviQI GTAC 2 cut(s) 313, 317
DdeI CTNAG 3 cut(s) 44, 133, 320
DpnI GATC 2 cut(s) 101, 349
DpnII GATC 2 cut(s) 99, 347
EaeI YGGCCR 1 cut(s) 184
Ecl136II GAGCTC 1 cut(s) 287
Eco105I TACGTA 1 cut(s) 316
Eco24I GRGCYC 1 cut(s) 289
Eco47I GGWCC 1 cut(s) 272
Eco53kI GAGCTC 1 cut(s) 287
Eco57I CTGAAG 1 cut(s) 328
EcoICRI GAGCTC 1 cut(s) 287
EcoRII CCWGG 3 cut(s) 80, 108, 181
EcoT38I GRGCYC 1 cut(s) 289
FaeI CATG 1 cut(s) 100
FaiI YATR 3 cut(s) 98, 174, 306
FaqI GGGAC 1 cut(s) 260
FatI CATG 1 cut(s) 96
Fnu4HI GCNGC 5 cut(s) 41, 213, 216, 297, 300
FokI GGATG 1 cut(s) 92
FriOI GRGCYC 1 cut(s) 289
Fsp4HI GCNGC 5 cut(s) 41, 213, 216, 297, 300
FspBI CTAG 3 cut(s) 126, 201, 333
GluI GCNGC 5 cut(s) 41, 213, 216, 297, 300
HaeIII GGCC 2 cut(s) 86, 186
Hin1II CATG 1 cut(s) 100
HinfI GANTC 1 cut(s) 129
HphI GGTGA 1 cut(s) 171
Hpy166II GTNNAC 2 cut(s) 115, 179
Hpy188I TCNGA 4 cut(s) 25, 272, 291, 347
Hpy8I GTNNAC 2 cut(s) 115, 179
HpyAV CCTTC 3 cut(s) 27, 97, 352
HpyCH4III ACNGT 1 cut(s) 9
HpyCH4IV ACGT 1 cut(s) 315
HpyF10VI GCNNNNNNNGC 3 cut(s) 77, 293, 338
HpyF3I CTNAG 3 cut(s) 44, 133, 320
HpySE526I ACGT 1 cut(s) 315
Hsp92II CATG 1 cut(s) 100
Kzo9I GATC 2 cut(s) 99, 347
LmnI GCTCC 1 cut(s) 284
Lsp1109I GCAGC 5 cut(s) 27, 199, 202, 308, 311
LweI GCATC 1 cut(s) 335
MaeI CTAG 3 cut(s) 126, 201, 333
MaeII ACGT 1 cut(s) 315
MaeIII GTNAC 2 cut(s) 3, 49
MalI GATC 2 cut(s) 101, 349
MboI GATC 2 cut(s) 99, 347
MboII GAAGA 1 cut(s) 94
MhlI GDGCHC 1 cut(s) 289
MlsI TGGCCA 1 cut(s) 186
MluCI AATT 2 cut(s) 75, 361
MluNI TGGCCA 1 cut(s) 186
MmeI TCCRAC 1 cut(s) 250
MnlI CCTC 1 cut(s) 315
Mox20I TGGCCA 1 cut(s) 186
MscI TGGCCA 1 cut(s) 186
MseI TTAA 1 cut(s) 74
Msp20I TGGCCA 1 cut(s) 186
MspR9I CCNGG 3 cut(s) 82, 110, 183
MvaI CCWGG 3 cut(s) 82, 110, 183
MwoI GCNNNNNNNGC 3 cut(s) 77, 293, 338
NdeII GATC 2 cut(s) 99, 347
NlaIII CATG 1 cut(s) 100
NlaIV GGNNCC 1 cut(s) 145
NmuCI GTSAC 2 cut(s) 3, 49
PfeI GAWTC 1 cut(s) 129
PflFI GACNNNGTC 1 cut(s) 239
PflMI CCANNNNNTGG 1 cut(s) 281
PkrI GCNGC 5 cut(s) 42, 214, 217, 298, 301
Ppu21I YACGTR 1 cut(s) 316
PshBI ATTAAT 1 cut(s) 74
PsiI TTATAA 1 cut(s) 306
Psp124BI GAGCTC 1 cut(s) 289
Psp6I CCWGG 3 cut(s) 80, 108, 181
PspGI CCWGG 3 cut(s) 80, 108, 181
PspN4I GGNNCC 1 cut(s) 145
PspPI GGNCC 2 cut(s) 84, 272
PsyI GACNNNGTC 1 cut(s) 239
RsaI GTAC 2 cut(s) 314, 318
RsaNI GTAC 2 cut(s) 313, 317
SacI GAGCTC 1 cut(s) 289
SaqAI TTAA 1 cut(s) 74
SatI GCNGC 5 cut(s) 41, 213, 216, 297, 300
Sau3AI GATC 2 cut(s) 99, 347
Sau96I GGNCC 2 cut(s) 84, 272
ScrFI CCNGG 3 cut(s) 82, 110, 183
SduI GDGCHC 1 cut(s) 289
SetI ASST 7 cut(s) 42, 139, 184, 289, 304, 318, 334
SfaNI GCATC 1 cut(s) 335
SinI GGWCC 1 cut(s) 272
SnaBI TACGTA 1 cut(s) 316
Sse9I AATT 2 cut(s) 75, 361
SspMI CTAG 3 cut(s) 126, 201, 333
SstI GAGCTC 1 cut(s) 289
StyD4I CCNGG 3 cut(s) 80, 108, 181
TaaI ACNGT 1 cut(s) 9
TaiI ACGT 1 cut(s) 318
TasI AATT 2 cut(s) 75, 361
TfiI GAWTC 1 cut(s) 129
Tru1I TTAA 1 cut(s) 74
Tru9I TTAA 1 cut(s) 74
TseFI GTSAC 2 cut(s) 3, 49
TseI GCWGC 5 cut(s) 40, 212, 215, 296, 299
Tsp45I GTSAC 2 cut(s) 3, 49
TspDTI ATGAA 2 cut(s) 94, 268
Tth111I GACNNNGTC 1 cut(s) 239
Van91I CCANNNNNTGG 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 272
VspI ATTAAT 1 cut(s) 74
XspI CTAG 3 cut(s) 126, 201, 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.