response to cold
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G38905 |
| malus_domestica | MD01G1131300.v1.1 MD07G1179400.v1.1 |
| prunus_persica | Prupe.2G218700_v2.0.a1 |
| pyrus_communis | pycom01g14010 |
| rosa_chinensis | RchiOBHm_Chr1g0364141 |
| rosa_roxburghii | Rroxscaffold_4G00292600 |
| rosa_rugosa | Rorug01G0313900 |
| rosa_wichuraiana | Rw1G028500 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB7I | CCANNNNNTGG | 2 cut(s) | 53, 128 |
| AclI | AACGTT | 2 cut(s) | 14, 89 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 53, 128 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 15 |
| AsuC2I | CCSGG | 1 cut(s) | 208 |
| BbsI | GAAGAC | 2 cut(s) | 52, 127 |
| BcnI | CCSGG | 1 cut(s) | 208 |
| Bme1390I | CCNGG | 1 cut(s) | 208 |
| BmrFI | CCNGG | 1 cut(s) | 208 |
| BpiI | GAAGAC | 2 cut(s) | 52, 127 |
| BpuMI | CCSGG | 1 cut(s) | 208 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 53, 128 |
| BseGI | GGATG | 2 cut(s) | 39, 114 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 53, 128 |
| BsiSI | CCGG | 1 cut(s) | 208 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 53, 128 |
| BstF5I | GGATG | 2 cut(s) | 39, 114 |
| BstSCI | CCNGG | 1 cut(s) | 206 |
| BstV2I | GAAGAC | 2 cut(s) | 52, 127 |
| BtsCI | GGATG | 2 cut(s) | 39, 114 |
| CviJI | RGCY | 2 cut(s) | 75, 150 |
| CviKI_1 | RGCY | 2 cut(s) | 75, 150 |
| FaiI | YATR | 4 cut(s) | 176, 202, 204, 216 |
| FokI | GGATG | 2 cut(s) | 26, 101 |
| HapII | CCGG | 1 cut(s) | 208 |
| HinfI | GANTC | 3 cut(s) | 57, 132, 211 |
| HpaII | CCGG | 1 cut(s) | 208 |
| Hpy188I | TCNGA | 1 cut(s) | 10 |
| Hpy188III | TCNNGA | 3 cut(s) | 20, 95, 170 |
| HpyAV | CCTTC | 2 cut(s) | 74, 149 |
| HpyCH4IV | ACGT | 2 cut(s) | 14, 89 |
| HpySE526I | ACGT | 2 cut(s) | 14, 89 |
| LpnPI | CCDG | 6 cut(s) | 5, 63, 80, 138, 155, 221 |
| MaeII | ACGT | 2 cut(s) | 14, 89 |
| MboII | GAAGA | 2 cut(s) | 52, 127 |
| MlyI | GAGTC | 2 cut(s) | 66, 141 |
| MmeI | TCCRAC | 2 cut(s) | 34, 109 |
| MnlI | CCTC | 2 cut(s) | 53, 128 |
| MroXI | GAANNNNTTC | 1 cut(s) | 15 |
| MslI | CAYNNNNRTG | 1 cut(s) | 219 |
| MspI | CCGG | 1 cut(s) | 208 |
| MspR9I | CCNGG | 1 cut(s) | 208 |
| NciI | CCSGG | 1 cut(s) | 208 |
| PdmI | GAANNNNTTC | 1 cut(s) | 15 |
| PfeI | GAWTC | 1 cut(s) | 211 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 53, 128 |
| PleI | GAGTC | 2 cut(s) | 65, 140 |
| PpsI | GAGTC | 2 cut(s) | 65, 140 |
| Psp1406I | AACGTT | 2 cut(s) | 14, 89 |
| RseI | CAYNNNNRTG | 1 cut(s) | 219 |
| SchI | GAGTC | 2 cut(s) | 66, 141 |
| ScrFI | CCNGG | 1 cut(s) | 208 |
| SetI | ASST | 4 cut(s) | 17, 52, 92, 127 |
| SgeI | CNNG | 7 cut(s) | 32, 62, 107, 137, 182, 219, 220 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 219 |
| SspI | AATATT | 1 cut(s) | 193 |
| StyD4I | CCNGG | 1 cut(s) | 206 |
| TaiI | ACGT | 2 cut(s) | 17, 92 |
| TfiI | GAWTC | 1 cut(s) | 211 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 53, 128 |
| XmnI | GAANNNNTTC | 1 cut(s) | 15 |