MD07G1188100.v1.1

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0016938
Physical Location & Seq
Reverse (-)
26864078 .. 26865392
1315 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1188100.v1.1.491

Sequence Viewer

Length: 1233 bp
ATGGAGCTCTTGTTAGCAATGTGTTTATTGCTTCTAGTCTGTGCTTTCATCTACCTCTGCGAGTTGGTTCTTCAACGGAGGCACCAACAATGCTACTTGTTGGCTTATGAGTGCTACAAGGCCACTGACGACCGGAAGCTGGACACCGAATCCTGCGTCAAGATTATCCGCCGCAACACGAATCTGAGGCTAGAAGAATACAGGTTTCTCCTCAAAACCATCGTTAACTCAGGCCTCGGAGAGGAAACTTACGGTCCAAGAAATGTCATCGCTGGCCGCGAGGAGTGTCCTAGTTTGAAAGACTCACTTTGGGAGATGGACGATATAATGTTTGGCTCGCTCGACAAGCTATTCGACATAGCAGGAATTTCAACTTCGAATATCGACATACTTGTTGTCAACGTGTCGTTGTTCTCTCCCGCGCCTTCTCTGACGGCTAGGATCATAAAGCGTTACAAGATGAAGACGCACATCAAGGCGTTCAACCTCTCGGGAATGGGGTGCAAATCGCTTGCTCCAAATTGGTACCGAGGCAAAGTTCAGCCTATGATGCTTGCTAATTGCCTCTATCGCTCGGGAGGGTGTTCTATGATCCTCACAAACAAAAAGCATCTCAAGCATCGATCGCTTTTGAAATTGCAATGCATCGTGCGGACGCATCTTGGCTCGATGGATGAAGGATATGGCTGCTCCACGCAAGTAGAAGACAATAATGGATTCCGCGGTTTTAATCTCAGCAAAAGCATAGCCAAAGTTGCAGCCAAAGCTCTTACCATGAACCTTCGAATCCTACTGCGAAAAGTGTTACCGCTTACAGAATTACTGCGCTATGTTATCGTGTCACGTCGTCCAAACAAAGTCGGAAATGCTGGCTTGAATCTCAAGGCAGGGCTTGATCACTTCTGCATACCCCCTACTGAAGCCGCAGTTGTTAACGGGGTTGGAAGGAGCTTAGGGCTCAACGACTATGATCTCGAGCCTGAGAGAATGGCGCTACACCGATTTGGAAACACATCTTCGGGAGGGCTTTGGTACGTTTTGGGGTACATGGAGGCTAAGAGGAGGCTTAAAAAGGGTGAGAAAATTTTTATGGTGAGCTTTGGAGCTGGCTATGAGTGCAACAATTGTGTGTGGGAGATTTTTAAGGGACATGGAGAATGCCAATGTCTGGAAAGATTGCATAGAAAGTTACCCTCCAGAAACCCTAGTGAATCCTTTCATGGAGAAGTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

411

Amino Acids

46.34

Weight (kDa)

9.23

Isoelectric Point (pI)

41.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAE1_CUT1_RppA PF08392 24 - 169 1.3e-51 FAE1/Type III polyketide synthase-like protein
FAE1_CUT1_RppA PF08392 170 - 279 4.6e-36 FAE1/Type III polyketide synthase-like protein
ACP_syn_III_C PF08541 300 - 379 8.1e-08 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016938)

Species Orthologous Gene IDs
malus_domestica MD01G1119300.v1.1 MD07G1188100.v1.1
prunus_persica Prupe.2G226000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365261
rosa_laevigata RLG00000027436
rosa_multiflora Rmu_sc0020532.1_g000001
rosa_roxburghii Rroxscaffold_4G00291340 Rroxscaffold_4G00291880
rosa_rugosa Rorug01G0320500
rosa_samantha Rh1AG329500 Rh1BG290900 Rh1CG307800 Rh1DG322600
rosa_wichuraiana Rw1G029220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 525
AccB1I GGYRCC 2 cut(s) 81, 525
AccB7I CCANNNNNTGG 1 cut(s) 1168
AccII CGCG 3 cut(s) 279, 422, 723
AciI CCGC 9 cut(s) 169, 172, 277, 420, 652, 721, 723, 809, 924
AclWI GGATC 2 cut(s) 449, 586
AcoI YGGCCR 1 cut(s) 274
AcsI RAATTY 2 cut(s) 366, 1083
AcuI CTGAAG 1 cut(s) 939
AfaI GTAC 3 cut(s) 527, 1034, 1046
AfiI CCNNNNNNNGG 3 cut(s) 139, 241, 1168
AflIII ACRYGT 1 cut(s) 402
AgsI TTSAA 6 cut(s) 74, 298, 372, 484, 634, 877
AjiI CACGTC 1 cut(s) 845
AluBI AGCT 7 cut(s) 7, 139, 349, 767, 951, 1098, 1106
AluI AGCT 7 cut(s) 7, 139, 349, 767, 951, 1098, 1106
Alw21I GWGCWC 1 cut(s) 9
AlwI GGATC 2 cut(s) 449, 586
Ama87I CYCGRG 3 cut(s) 490, 574, 974
AoxI GGCC 3 cut(s) 120, 232, 274
ApeKI GCWGC 2 cut(s) 687, 758
ApoI RAATTY 2 cut(s) 366, 1083
ArsI GACNNNNNNTTYG 4 cut(s) 141, 173, 335, 367
Asp700I GAANNNNTTC 1 cut(s) 1215
Asp718I GGTACC 1 cut(s) 525
AspLEI GCGC 3 cut(s) 424, 828, 994
AspS9I GGNCC 1 cut(s) 254
AsuHPI GGTGA 2 cut(s) 1088, 1105
AsuII TTCGAA 2 cut(s) 377, 784
AvaI CYCGRG 3 cut(s) 490, 574, 974
AvaII GGWCC 1 cut(s) 254
BanI GGYRCC 2 cut(s) 81, 525
BanII GRGCYC 2 cut(s) 9, 960
BbsI GAAGAC 2 cut(s) 470, 711
Bbv12I GWGCWC 1 cut(s) 9
BbvI GCAGC 2 cut(s) 674, 770
BccI CCATC 3 cut(s) 227, 310, 664
BceAI ACGGC 1 cut(s) 450
BclI TGATCA 1 cut(s) 895
BfaI CTAG 5 cut(s) 35, 191, 291, 438, 1206
BfoI RGCGCY 1 cut(s) 995
BisI GCNGC 5 cut(s) 172, 277, 688, 759, 924
BlsI GCNGC 5 cut(s) 173, 278, 689, 760, 925
Bme18I GGWCC 1 cut(s) 254
BmeT110I CYCGRG 3 cut(s) 490, 574, 974
BmgBI CACGTC 1 cut(s) 845
BmgT120I GGNCC 1 cut(s) 254
BmiI GGNNCC 2 cut(s) 83, 527
BmsI GCATC 5 cut(s) 540, 619, 628, 654, 667
BpiI GAAGAC 2 cut(s) 470, 711
BpmI CTGGAG 1 cut(s) 1180
Bpu10I CCTNAGC 1 cut(s) 952
Bpu14I TTCGAA 2 cut(s) 377, 784
BpuEI CTTGAG 2 cut(s) 599, 866
Bsa29I ATCGAT 1 cut(s) 622
BsaJI CCNNGG 3 cut(s) 235, 529, 721
BsaWI WCCGGW 1 cut(s) 132
BsaXI ACNNNNNCTCC 1 cut(s) 26
Bsc4I CCNNNNNNNGG 3 cut(s) 139, 241, 1168
Bse3DI GCAATG 2 cut(s) 24, 647
BseCI ATCGAT 1 cut(s) 622
BseDI CCNNGG 3 cut(s) 235, 529, 721
BseGI GGATG 1 cut(s) 679
BseLI CCNNNNNNNGG 3 cut(s) 139, 241, 1168
BseMI GCAATG 2 cut(s) 24, 647
BseMII CTCAG 4 cut(s) 176, 243, 748, 972
BseRI GAGGAG 3 cut(s) 200, 296, 1075
BseXI GCAGC 2 cut(s) 674, 770
Bsh1236I CGCG 3 cut(s) 279, 422, 723
Bsh1285I CGRYCG 2 cut(s) 133, 626
BshFI GGCC 3 cut(s) 122, 234, 276
BshNI GGYRCC 2 cut(s) 81, 525
BshVI ATCGAT 1 cut(s) 622
BsiEI CGRYCG 2 cut(s) 133, 626
BsiHKAI GWGCWC 1 cut(s) 9
BsiHKCI CYCGRG 3 cut(s) 490, 574, 974
BsiSI CCGG 1 cut(s) 133
BslFI GGGAC 1 cut(s) 1161
BslI CCNNNNNNNGG 3 cut(s) 139, 241, 1168
BsmFI GGGAC 1 cut(s) 1161
BsmI GAATGC 1 cut(s) 1163
BsnI GGCC 3 cut(s) 122, 234, 276
BsoBI CYCGRG 3 cut(s) 490, 574, 974
Bsp119I TTCGAA 2 cut(s) 377, 784
Bsp1286I GDGCHC 2 cut(s) 9, 960
Bsp143I GATC 5 cut(s) 441, 591, 623, 895, 970
BspACI CCGC 9 cut(s) 169, 172, 277, 420, 652, 721, 723, 809, 924
BspANI GGCC 3 cut(s) 122, 234, 276
BspCNI CTCAG 4 cut(s) 177, 242, 747, 973
BspDI ATCGAT 1 cut(s) 622
BspFNI CGCG 3 cut(s) 279, 422, 723
BspLI GGNNCC 2 cut(s) 83, 527
BspPI GGATC 2 cut(s) 449, 586
BspT104I TTCGAA 2 cut(s) 377, 784
BspT107I GGYRCC 2 cut(s) 81, 525
BsrDI GCAATG 2 cut(s) 24, 647
BssECI CCNNGG 3 cut(s) 235, 529, 721
BssMI GATC 5 cut(s) 441, 591, 623, 895, 970
Bst4CI ACNGT 1 cut(s) 254
BstBI TTCGAA 2 cut(s) 377, 784
BstC8I GCNNGC 6 cut(s) 274, 338, 513, 555, 871, 1108
BstDEI CTNAG 6 cut(s) 185, 229, 734, 952, 981, 1056
BstDSI CCRYGG 1 cut(s) 721
BstENI CCTNNNNNAGG 1 cut(s) 239
BstF5I GGATG 1 cut(s) 679
BstFNI CGCG 3 cut(s) 279, 422, 723
BstH2I RGCGCY 1 cut(s) 995
BstHHI GCGC 3 cut(s) 424, 828, 994
BstKTI GATC 5 cut(s) 444, 594, 626, 898, 973
BstMBI GATC 5 cut(s) 441, 591, 623, 895, 970
BstMCI CGRYCG 2 cut(s) 133, 626
BstMWI GCNNNNNNNGC 8 cut(s) 346, 550, 570, 616, 625, 755, 764, 1116
BstUI CGCG 3 cut(s) 279, 422, 723
BstV1I GCAGC 2 cut(s) 674, 770
BstV2I GAAGAC 2 cut(s) 470, 711
Bsu15I ATCGAT 1 cut(s) 622
BsuRI GGCC 3 cut(s) 122, 234, 276
BsuTUI ATCGAT 1 cut(s) 622
BtgI CCRYGG 1 cut(s) 721
BtgZI GCGATG 1 cut(s) 253
BtrI CACGTC 1 cut(s) 845
BtsCI GGATG 1 cut(s) 679
BtsIMutI CAGTG 1 cut(s) 123
Cac8I GCNNGC 6 cut(s) 274, 338, 513, 555, 871, 1108
CfoI GCGC 3 cut(s) 424, 828, 994
Cfr13I GGNCC 1 cut(s) 254
Cfr42I CCGCGG 1 cut(s) 724
ClaI ATCGAT 1 cut(s) 622
CseI GACGC 3 cut(s) 145, 475, 664
Csp6I GTAC 3 cut(s) 526, 1033, 1045
CviAII CATG 4 cut(s) 775, 1048, 1151, 1220
CviQI GTAC 3 cut(s) 526, 1033, 1045
DdeI CTNAG 6 cut(s) 185, 229, 734, 952, 981, 1056
DpnI GATC 5 cut(s) 443, 593, 625, 897, 972
DpnII GATC 5 cut(s) 441, 591, 623, 895, 970
EaeI YGGCCR 1 cut(s) 274
EciI GGCGGA 1 cut(s) 158
Ecl136II GAGCTC 1 cut(s) 7
Eco147I AGGCCT 1 cut(s) 234
Eco24I GRGCYC 2 cut(s) 9, 960
Eco47I GGWCC 1 cut(s) 254
Eco53kI GAGCTC 1 cut(s) 7
Eco57I CTGAAG 1 cut(s) 939
Eco88I CYCGRG 3 cut(s) 490, 574, 974
EcoICRI GAGCTC 1 cut(s) 7
EcoNI CCTNNNNNAGG 1 cut(s) 239
EcoT22I ATGCAT 1 cut(s) 647
EcoT38I GRGCYC 2 cut(s) 9, 960
FaeI CATG 4 cut(s) 778, 1051, 1154, 1223
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FaqI GGGAC 1 cut(s) 1161
FatI CATG 4 cut(s) 774, 1047, 1150, 1219
FauI CCCGC 1 cut(s) 427
FbaI TGATCA 1 cut(s) 895
Fnu4HI GCNGC 5 cut(s) 172, 277, 688, 759, 924
FokI GGATG 1 cut(s) 686
FriOI GRGCYC 2 cut(s) 9, 960
Fsp4HI GCNGC 5 cut(s) 172, 277, 688, 759, 924
FspBI CTAG 5 cut(s) 35, 191, 291, 438, 1206
GlaI GCGC 3 cut(s) 423, 827, 993
GluI GCNGC 5 cut(s) 172, 277, 688, 759, 924
GsuI CTGGAG 1 cut(s) 1180
HaeII RGCGCY 1 cut(s) 995
HaeIII GGCC 3 cut(s) 122, 234, 276
HapII CCGG 1 cut(s) 133
HgaI GACGC 3 cut(s) 145, 475, 664
HhaI GCGC 3 cut(s) 424, 828, 994
Hin1II CATG 4 cut(s) 778, 1051, 1154, 1223
Hin6I GCGC 3 cut(s) 422, 826, 992
HinP1I GCGC 3 cut(s) 422, 826, 992
HincII GTYRAC 3 cut(s) 226, 400, 934
HindII GTYRAC 3 cut(s) 226, 400, 934
HinfI GANTC 7 cut(s) 149, 181, 302, 717, 786, 877, 1211
HpaI GTTAAC 2 cut(s) 226, 934
HpaII CCGG 1 cut(s) 133
HphI GGTGA 2 cut(s) 1088, 1105
Hpy166II GTNNAC 3 cut(s) 226, 400, 934
Hpy188I TCNGA 4 cut(s) 186, 239, 432, 863
Hpy188III TCNNGA 7 cut(s) 160, 492, 576, 974, 1020, 1169, 1197
Hpy8I GTNNAC 3 cut(s) 226, 400, 934
Hpy99I CGWCG 1 cut(s) 849
HpyAV CCTTC 4 cut(s) 435, 671, 791, 939
HpyCH4III ACNGT 1 cut(s) 254
HpyCH4IV ACGT 3 cut(s) 402, 844, 1035
HpyCH4V TGCA 7 cut(s) 504, 640, 645, 758, 906, 1119, 1180
HpyF10VI GCNNNNNNNGC 8 cut(s) 346, 550, 570, 616, 625, 755, 764, 1116
HpyF3I CTNAG 6 cut(s) 185, 229, 734, 952, 981, 1056
HpySE526I ACGT 3 cut(s) 402, 844, 1035
Hsp92II CATG 4 cut(s) 778, 1051, 1154, 1223
HspAI GCGC 3 cut(s) 422, 826, 992
KpnI GGTACC 1 cut(s) 529
Ksp22I TGATCA 1 cut(s) 895
KspAI GTTAAC 2 cut(s) 226, 934
KspI CCGCGG 1 cut(s) 724
Kzo9I GATC 5 cut(s) 441, 591, 623, 895, 970
LmnI GCTCC 5 cut(s) 4, 520, 695, 948, 1103
Lsp1109I GCAGC 2 cut(s) 674, 770
LweI GCATC 5 cut(s) 540, 619, 628, 654, 667
MaeI CTAG 5 cut(s) 35, 191, 291, 438, 1206
MaeII ACGT 3 cut(s) 402, 844, 1035
MaeIII GTNAC 4 cut(s) 452, 804, 840, 1188
MalI GATC 5 cut(s) 443, 593, 625, 897, 972
MboI GATC 5 cut(s) 441, 591, 623, 895, 970
MboII GAAGA 5 cut(s) 62, 206, 475, 716, 1008
MfeI CAATTG 1 cut(s) 1123
MhlI GDGCHC 2 cut(s) 9, 960
MluCI AATT 7 cut(s) 366, 520, 559, 635, 818, 1083, 1123
MlyI GAGTC 1 cut(s) 296
MmeI TCCRAC 2 cut(s) 841, 922
Mph1103I ATGCAT 1 cut(s) 647
MroXI GAANNNNTTC 1 cut(s) 1215
MseI TTAA 5 cut(s) 225, 729, 933, 1068, 1143
MspA1I CMGCKG 1 cut(s) 723
MspI CCGG 1 cut(s) 133
MunI CAATTG 1 cut(s) 1123
Mva1269I GAATGC 1 cut(s) 1163
MvnI CGCG 3 cut(s) 279, 422, 723
MwoI GCNNNNNNNGC 8 cut(s) 346, 550, 570, 616, 625, 755, 764, 1116
NdeII GATC 5 cut(s) 441, 591, 623, 895, 970
NlaIII CATG 4 cut(s) 778, 1051, 1154, 1223
NlaIV GGNNCC 2 cut(s) 83, 527
NmuCI GTSAC 1 cut(s) 840
NsiI ATGCAT 1 cut(s) 647
NspV TTCGAA 2 cut(s) 377, 784
PaeR7I CTCGAG 1 cut(s) 974
PceI AGGCCT 1 cut(s) 234
PcsI WCGNNNNNNNCGW 1 cut(s) 276
PctI GAATGC 1 cut(s) 1163
PdmI GAANNNNTTC 1 cut(s) 1215
PfeI GAWTC 6 cut(s) 149, 181, 717, 786, 877, 1211
PflMI CCANNNNNTGG 1 cut(s) 1168
PkrI GCNGC 5 cut(s) 173, 278, 689, 760, 925
Ple19I CGATCG 1 cut(s) 626
PleI GAGTC 1 cut(s) 296
PpsI GAGTC 1 cut(s) 296
Psp124BI GAGCTC 1 cut(s) 9
PspN4I GGNNCC 2 cut(s) 83, 527
PspPI GGNCC 1 cut(s) 254
PvuI CGATCG 1 cut(s) 626
RsaI GTAC 3 cut(s) 527, 1034, 1046
RsaNI GTAC 3 cut(s) 526, 1033, 1045
SacI GAGCTC 1 cut(s) 9
SacII CCGCGG 1 cut(s) 724
SaqAI TTAA 5 cut(s) 225, 729, 933, 1068, 1143
SatI GCNGC 5 cut(s) 172, 277, 688, 759, 924
Sau3AI GATC 5 cut(s) 441, 591, 623, 895, 970
Sau96I GGNCC 1 cut(s) 254
SchI GAGTC 1 cut(s) 296
SduI GDGCHC 2 cut(s) 9, 960
SfaNI GCATC 5 cut(s) 540, 619, 628, 654, 667
Sfr274I CTCGAG 1 cut(s) 974
Sfr303I CCGCGG 1 cut(s) 724
SfuI TTCGAA 2 cut(s) 377, 784
SgrBI CCGCGG 1 cut(s) 724
SinI GGWCC 1 cut(s) 254
SlaI CTCGAG 1 cut(s) 974
SmlI CTYRAG 3 cut(s) 614, 881, 974
SmoI CTYRAG 3 cut(s) 614, 881, 974
Sse9I AATT 7 cut(s) 366, 520, 559, 635, 818, 1083, 1123
SseBI AGGCCT 1 cut(s) 234
SsiI CCGC 9 cut(s) 169, 172, 277, 420, 652, 721, 723, 809, 924
SspMI CTAG 5 cut(s) 35, 191, 291, 438, 1206
SstI GAGCTC 1 cut(s) 9
StuI AGGCCT 1 cut(s) 234
TaaI ACNGT 1 cut(s) 254
TaiI ACGT 3 cut(s) 405, 847, 1038
TaqI TCGA 8 cut(s) 342, 354, 377, 384, 622, 668, 784, 975
TasI AATT 7 cut(s) 366, 520, 559, 635, 818, 1083, 1123
TauI GCSGC 3 cut(s) 174, 279, 926
TfiI GAWTC 6 cut(s) 149, 181, 717, 786, 877, 1211
Tru1I TTAA 5 cut(s) 225, 729, 933, 1068, 1143
Tru9I TTAA 5 cut(s) 225, 729, 933, 1068, 1143
TscAI CASTG 1 cut(s) 130
TseFI GTSAC 1 cut(s) 840
TseI GCWGC 2 cut(s) 687, 758
Tsp45I GTSAC 1 cut(s) 840
TspDTI ATGAA 5 cut(s) 37, 476, 690, 791, 1208
TspGWI ACGGA 1 cut(s) 91
TspRI CASTG 1 cut(s) 130
Van91I CCANNNNNTGG 1 cut(s) 1168
VpaK11BI GGWCC 1 cut(s) 254
XagI CCTNNNNNAGG 1 cut(s) 239
XapI RAATTY 2 cut(s) 366, 1083
XhoI CTCGAG 1 cut(s) 974
XmnI GAANNNNTTC 1 cut(s) 1215
XspI CTAG 5 cut(s) 35, 191, 291, 438, 1206
Zsp2I ATGCAT 1 cut(s) 647
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.