Prupe.2G226000_v2.0.a1

3-ketoacyl-CoA synthase

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp02
Physical Location & Seq
Reverse (-)
25269543 .. 25271598
2056 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.2G226000.1

Sequence Viewer

Length: 1425 bp
ATGGAGCTTTTCATGGCAATGTGTTTATTGCCTCTGTTCTGTGCTTGTCTCTACCTCTGTAAGTTGGTTCTTCAATGGAGGAACCAACAATGCTACTTGCTGGCCTATGAGTGCTACAAGGCCACCGATGACAGGAAACTCGACACTGAGTCCTGTGTCAAAATCATTCAGCGGAACAAGAACCTTGGCCTAGAAGAATACAGGTTTCTCCTCAAGACTATTGTCAATTCGGGCCTCGGGGAAGAAACTTACGGTCCAAGAAATGTCATTGCTGGCCGCGAAGATTGCCCTAGCTTGGAAGATGCACTGTGGGAGATGGATGATATATTCTCTGTCACACTTGACAAGCTGTTTGACAGAACAGGAATTTCACCTTCGAAAATCGACATACTTGTTGTCAATGTGTCACTCTTCTCCCCTGCGCCTTCTCTAACGTCTAGGATTATAAACCATTACAAGATGAAGAAGGATATCAAGGCCTTCAACCTCTCTGGCATGGGCTGCAGTGGGAGCCTTGTGGCCATTGATCTTGTGCAGAACTTGTTCAAGACATATAAGAATGTACATGCTGTTGTTGTGAGCACAGAGTCCCTTGGTCCAAATTGGTACCGCGGCAAAGTGAAGCCTATGATTCTTGCTAACTGTCTTTACCGGTCAGGAGGGTGTTCTATGCTTTTCACAAACAACAAGGCTCTCAAGCACAGAGCCCTCTTGAAATTGGAATGCATTGTAAGAACCCATCATGGTTCGAGTGATGAAGGCTATGGCTGCTCCATACAAGTAGAAGATAAACATGGGTTCAGGGGTTTTAATCTCAGCAAAAGCATAGCCAAAGTTGCTGCCAAAGCTCTTACTATGAACCTGCGTGTGCTGGTGCGCAAAGTGCTGCCGCTGACTGAATTGCTGCGCTATGTGATCATGTCTCGCCGCCAAAACAAAGTTGCTGAGCATCGCCGCGGTGTTGGAGCAGACGGGACAGGTTTGAATCTCAAGGCTGGACTTGAGCACTTCTGCATACCGCCTACAGAAGGTGCAGTTGTTAATGGGGTTGGCAATAGTTTAGGCCTCAATGACTATGATCTAGAGCCTGCTCGAATGGCACTTCACCGATTTGGCAACACATCCTCCGGTGGCCTTTGGTATGTTTTGGGATACATGGAGGCCAAGAAGCGGCTTAAGAAGCGAGACAAGATTCTGATGGTGAGCTTTGGTGCAGGTTATGAGTGCAATAATTGTGTGTGGGTGGTGTTGAGGGATTTGCATGATGCCAATGTGTGGAAAGACTGCATAGAAAGGTACCCTCCAACAACTTTGGTCAACCCTTTCATGGATAGGCTTAGTTGGATCAATGATGAACGCCTAAGCTTTGTCACATTTGAGGAGGTTATGAATGCAGTGCGTGTAGGTGGCGTTGGACCTGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
Pfam Domains
Protein Families

Protein Analysis

475

Amino Acids

53.24

Weight (kDa)

8.95

Isoelectric Point (pI)

33.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0016938)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 446
Acc16I TGCGCA 1 cut(s) 878
Acc36I ACCTGC 2 cut(s) 870, 1205
Acc65I GGTACC 2 cut(s) 606, 1296
AccB1I GGYRCC 2 cut(s) 606, 1296
AccB7I CCANNNNNTGG 1 cut(s) 1275
AccII CGCG 3 cut(s) 279, 612, 957
AclWI GGATC 1 cut(s) 1352
AcoI YGGCCR 2 cut(s) 274, 519
AcsI RAATTY 1 cut(s) 366
AfaI GTAC 3 cut(s) 564, 608, 1298
AfiI CCNNNNNNNGG 6 cut(s) 132, 295, 1028, 1170, 1275, 1327
AflII CTTAAG 1 cut(s) 1175
AgeI ACCGGT 1 cut(s) 651
AgsI TTSAA 5 cut(s) 74, 484, 547, 715, 985
AhdI GACNNNNNGTC 1 cut(s) 148
AjnI CCWGG 1 cut(s) 1417
AluBI AGCT 6 cut(s) 7, 294, 349, 848, 1206, 1365
AluI AGCT 6 cut(s) 7, 294, 349, 848, 1206, 1365
Alw21I GWGCWC 2 cut(s) 584, 1008
Alw26I GTCTC 3 cut(s) 53, 927, 1179
AlwI GGATC 1 cut(s) 1352
Ama87I CYCGRG 1 cut(s) 236
ApeKI GCWGC 5 cut(s) 501, 768, 839, 886, 904
ApoI RAATTY 1 cut(s) 366
ArsI GACNNNNNNTTYG 2 cut(s) 335, 367
AsiGI ACCGGT 1 cut(s) 651
Asp700I GAANNNNTTC 1 cut(s) 542
Asp718I GGTACC 2 cut(s) 606, 1296
AspLEI GCGC 3 cut(s) 424, 879, 909
AspS9I GGNCC 4 cut(s) 232, 254, 596, 1415
AsuHPI GGTGA 3 cut(s) 363, 1097, 1213
AsuII TTCGAA 1 cut(s) 377
AvaI CYCGRG 1 cut(s) 236
AvaII GGWCC 3 cut(s) 254, 596, 1415
BalI TGGCCA 1 cut(s) 521
BanI GGYRCC 2 cut(s) 606, 1296
BanII GRGCYC 1 cut(s) 709
Bbv12I GWGCWC 2 cut(s) 584, 1008
BbvI GCAGC 5 cut(s) 488, 755, 826, 873, 891
BccI CCATC 3 cut(s) 310, 747, 1192
BciT130I CCWGG 1 cut(s) 1419
BciVI GTATCC 1 cut(s) 1145
BclI TGATCA 1 cut(s) 915
BcoDI GTCTC 3 cut(s) 53, 927, 1179
BfaI CTAG 4 cut(s) 191, 291, 438, 1082
BfmI CTRYAG 2 cut(s) 502, 1023
BfrI CTTAAG 1 cut(s) 1175
BfuAI ACCTGC 2 cut(s) 870, 1205
BfuI GTATCC 1 cut(s) 1145
BlpI GCTNAGC 1 cut(s) 945
Bme1390I CCNGG 1 cut(s) 1419
Bme18I GGWCC 3 cut(s) 254, 596, 1415
BmeRI GACNNNNNGTC 1 cut(s) 148
BmeT110I CYCGRG 1 cut(s) 236
BmgT120I GGNCC 4 cut(s) 232, 254, 596, 1415
BmiI GGNNCC 4 cut(s) 83, 512, 608, 1298
BmrFI CCNGG 1 cut(s) 1419
BmsI GCATC 3 cut(s) 292, 958, 1255
BoxI GACNNNNGTC 1 cut(s) 221
Bpu10I CCTNAGC 1 cut(s) 1361
Bpu1102I GCTNAGC 1 cut(s) 945
Bpu14I TTCGAA 1 cut(s) 377
BpuEI CTTGAG 4 cut(s) 197, 680, 974, 1022
BsaJI CCNNGG 5 cut(s) 184, 235, 592, 610, 955
BsaWI WCCGGW 2 cut(s) 651, 1127
BsaXI ACNNNNNCTCC 2 cut(s) 1109, 1139
Bsc4I CCNNNNNNNGG 6 cut(s) 132, 295, 1028, 1170, 1275, 1327
Bse118I RCCGGY 1 cut(s) 651
Bse3DI GCAATG 2 cut(s) 24, 267
BseBI CCWGG 1 cut(s) 1419
BseDI CCNNGG 5 cut(s) 184, 235, 592, 610, 955
BseGI GGATG 2 cut(s) 325, 1121
BseLI CCNNNNNNNGG 6 cut(s) 132, 295, 1028, 1170, 1275, 1327
BseMI GCAATG 2 cut(s) 24, 267
BseMII CTCAG 3 cut(s) 138, 829, 936
BseRI GAGGAG 2 cut(s) 200, 1394
BseXI GCAGC 5 cut(s) 488, 755, 826, 873, 891
BsgI GTGCAG 3 cut(s) 554, 1053, 1233
Bsh1236I CGCG 3 cut(s) 279, 612, 957
BshNI GGYRCC 2 cut(s) 606, 1296
BshTI ACCGGT 1 cut(s) 651
BsiHKAI GWGCWC 2 cut(s) 584, 1008
BsiHKCI CYCGRG 1 cut(s) 236
BsiSI CCGG 2 cut(s) 652, 1128
BslFI GGGAC 2 cut(s) 574, 988
BslI CCNNNNNNNGG 6 cut(s) 132, 295, 1028, 1170, 1275, 1327
BsmAI GTCTC 3 cut(s) 53, 927, 1179
BsmFI GGGAC 2 cut(s) 574, 988
BsmI GAATGC 2 cut(s) 728, 1396
BsoBI CYCGRG 1 cut(s) 236
Bsp119I TTCGAA 1 cut(s) 377
Bsp1286I GDGCHC 3 cut(s) 584, 709, 1008
Bsp1407I TGTACA 1 cut(s) 562
Bsp143I GATC 4 cut(s) 526, 915, 1078, 1344
Bsp1720I GCTNAGC 1 cut(s) 945
BspCNI CTCAG 3 cut(s) 139, 828, 937
BspFNI CGCG 3 cut(s) 279, 612, 957
BspLI GGNNCC 4 cut(s) 83, 512, 608, 1298
BspMAI CTGCAG 1 cut(s) 506
BspMI ACCTGC 2 cut(s) 870, 1205
BspPI GGATC 1 cut(s) 1352
BspT104I TTCGAA 1 cut(s) 377
BspT107I GGYRCC 2 cut(s) 606, 1296
BspTI CTTAAG 1 cut(s) 1175
BsrDI GCAATG 2 cut(s) 24, 267
BsrFI RCCGGY 1 cut(s) 651
BsrGI TGTACA 1 cut(s) 562
BssAI RCCGGY 1 cut(s) 651
BssECI CCNNGG 5 cut(s) 184, 235, 592, 610, 955
BssMI GATC 4 cut(s) 526, 915, 1078, 1344
BssT1I CCWWGG 2 cut(s) 184, 592
Bst2UI CCWGG 1 cut(s) 1419
Bst4CI ACNGT 3 cut(s) 254, 309, 644
Bst6I CTCTTC 1 cut(s) 416
BstAFI CTTAAG 1 cut(s) 1175
BstAPI GCANNNNNTGC 1 cut(s) 501
BstAUI TGTACA 1 cut(s) 562
BstBI TTCGAA 1 cut(s) 377
BstC8I GCNNGC 3 cut(s) 102, 274, 1089
BstDEI CTNAG 5 cut(s) 147, 815, 945, 1337, 1361
BstDSI CCRYGG 2 cut(s) 610, 955
BstENI CCTNNNNNAGG 1 cut(s) 1026
BstF5I GGATG 2 cut(s) 325, 1121
BstFNI CGCG 3 cut(s) 279, 612, 957
BstHHI GCGC 3 cut(s) 424, 879, 909
BstKTI GATC 4 cut(s) 529, 918, 1081, 1347
BstMAI GTCTC 3 cut(s) 53, 927, 1179
BstMBI GATC 4 cut(s) 526, 915, 1078, 1344
BstMWI GCNNNNNNNGC 9 cut(s) 285, 501, 510, 768, 836, 845, 883, 1097, 1180
BstNI CCWGG 1 cut(s) 1419
BstNSI RCATGY 1 cut(s) 569
BstPAI GACNNNNGTC 1 cut(s) 221
BstSCI CCNGG 1 cut(s) 1417
BstSFI CTRYAG 2 cut(s) 502, 1023
BstUI CGCG 3 cut(s) 279, 612, 957
BstV1I GCAGC 5 cut(s) 488, 755, 826, 873, 891
BsuI GTATCC 1 cut(s) 1145
BtgI CCRYGG 2 cut(s) 610, 955
BtgZI GCGATG 1 cut(s) 935
BtsCI GGATG 2 cut(s) 325, 1121
BtsI GCAGTG 2 cut(s) 511, 1401
BtsIMutI CAGTG 4 cut(s) 144, 305, 511, 1401
BveI ACCTGC 2 cut(s) 870, 1205
Cac8I GCNNGC 3 cut(s) 102, 274, 1089
CfoI GCGC 3 cut(s) 424, 879, 909
Cfr10I RCCGGY 1 cut(s) 651
Cfr13I GGNCC 4 cut(s) 232, 254, 596, 1415
Cfr42I CCGCGG 2 cut(s) 613, 958
Csp6I GTAC 3 cut(s) 563, 607, 1297
CspAI ACCGGT 1 cut(s) 651
CviAII CATG 9 cut(s) 13, 496, 566, 743, 794, 919, 1156, 1262, 1327
CviQI GTAC 3 cut(s) 563, 607, 1297
DdeI CTNAG 5 cut(s) 147, 815, 945, 1337, 1361
DpnI GATC 4 cut(s) 528, 917, 1080, 1346
DpnII GATC 4 cut(s) 526, 915, 1078, 1344
DriI GACNNNNNGTC 1 cut(s) 148
EaeI YGGCCR 2 cut(s) 274, 519
Eam1104I CTCTTC 1 cut(s) 416
Eam1105I GACNNNNNGTC 1 cut(s) 148
EarI CTCTTC 1 cut(s) 416
Eco130I CCWWGG 2 cut(s) 184, 592
Eco147I AGGCCT 2 cut(s) 479, 1065
Eco24I GRGCYC 1 cut(s) 709
Eco32I GATATC 1 cut(s) 472
Eco47I GGWCC 3 cut(s) 254, 596, 1415
Eco88I CYCGRG 1 cut(s) 236
EcoNI CCTNNNNNAGG 1 cut(s) 1026
EcoRII CCWGG 1 cut(s) 1417
EcoRV GATATC 1 cut(s) 472
EcoT14I CCWWGG 2 cut(s) 184, 592
EcoT22I ATGCAT 1 cut(s) 728
EcoT38I GRGCYC 1 cut(s) 709
ErhI CCWWGG 2 cut(s) 184, 592
FaeI CATG 9 cut(s) 16, 499, 569, 746, 797, 922, 1159, 1265, 1330
FaqI GGGAC 2 cut(s) 574, 988
FatI CATG 9 cut(s) 12, 495, 565, 742, 793, 918, 1155, 1261, 1326
FbaI TGATCA 1 cut(s) 915
FokI GGATG 2 cut(s) 332, 1108
FriOI GRGCYC 1 cut(s) 709
FspBI CTAG 4 cut(s) 191, 291, 438, 1082
FspI TGCGCA 1 cut(s) 878
GlaI GCGC 3 cut(s) 423, 878, 908
HapII CCGG 2 cut(s) 652, 1128
HhaI GCGC 3 cut(s) 424, 879, 909
Hin1II CATG 9 cut(s) 16, 499, 569, 746, 797, 922, 1159, 1265, 1330
Hin6I GCGC 3 cut(s) 422, 877, 907
HinP1I GCGC 3 cut(s) 422, 877, 907
HincII GTYRAC 1 cut(s) 1318
HindII GTYRAC 1 cut(s) 1318
HindIII AAGCTT 1 cut(s) 1363
HinfI GANTC 5 cut(s) 149, 587, 631, 985, 1192
HpaII CCGG 2 cut(s) 652, 1128
HphI GGTGA 3 cut(s) 363, 1097, 1213
Hpy166II GTNNAC 1 cut(s) 1318
Hpy188I TCNGA 1 cut(s) 1197
Hpy188III TCNNGA 5 cut(s) 214, 547, 657, 712, 1082
Hpy8I GTNNAC 1 cut(s) 1318
HpyAV CCTTC 6 cut(s) 384, 435, 460, 490, 752, 1022
HpyCH4III ACNGT 3 cut(s) 254, 309, 644
HpyCH4IV ACGT 1 cut(s) 434
HpyF10VI GCNNNNNNNGC 9 cut(s) 285, 501, 510, 768, 836, 845, 883, 1097, 1180
HpyF3I CTNAG 5 cut(s) 147, 815, 945, 1337, 1361
HpySE526I ACGT 1 cut(s) 434
Hsp92II CATG 9 cut(s) 16, 499, 569, 746, 797, 922, 1159, 1265, 1330
HspAI GCGC 3 cut(s) 422, 877, 907
KpnI GGTACC 2 cut(s) 610, 1300
Ksp22I TGATCA 1 cut(s) 915
KspI CCGCGG 2 cut(s) 613, 958
Kzo9I GATC 4 cut(s) 526, 915, 1078, 1344
LmnI GCTCC 4 cut(s) 4, 510, 776, 965
Lsp1109I GCAGC 5 cut(s) 488, 755, 826, 873, 891
LweI GCATC 3 cut(s) 292, 958, 1255
MaeI CTAG 4 cut(s) 191, 291, 438, 1082
MaeII ACGT 1 cut(s) 434
MaeIII GTNAC 3 cut(s) 334, 405, 1369
MalI GATC 4 cut(s) 528, 917, 1080, 1346
MboI GATC 4 cut(s) 526, 915, 1078, 1344
MboII GAAGA 8 cut(s) 62, 206, 254, 293, 311, 403, 475, 797
MhlI GDGCHC 3 cut(s) 584, 709, 1008
MlsI TGGCCA 1 cut(s) 521
MluCI AATT 6 cut(s) 226, 366, 601, 716, 899, 1231
MluNI TGGCCA 1 cut(s) 521
MlyI GAGTC 2 cut(s) 158, 596
MmeI TCCRAC 4 cut(s) 943, 1322, 1328, 1393
Mox20I TGGCCA 1 cut(s) 521
Mph1103I ATGCAT 1 cut(s) 728
MroXI GAANNNNTTC 1 cut(s) 542
MscI TGGCCA 1 cut(s) 521
MseI TTAA 3 cut(s) 810, 1041, 1176
MslI CAYNNNNRTG 1 cut(s) 17
Msp20I TGGCCA 1 cut(s) 521
MspA1I CMGCKG 4 cut(s) 172, 612, 892, 957
MspCI CTTAAG 1 cut(s) 1175
MspI CCGG 2 cut(s) 652, 1128
MspR9I CCNGG 1 cut(s) 1419
Mva1269I GAATGC 2 cut(s) 728, 1396
MvaI CCWGG 1 cut(s) 1419
MvnI CGCG 3 cut(s) 279, 612, 957
MwoI GCNNNNNNNGC 9 cut(s) 285, 501, 510, 768, 836, 845, 883, 1097, 1180
NdeII GATC 4 cut(s) 526, 915, 1078, 1344
NlaIII CATG 9 cut(s) 16, 499, 569, 746, 797, 922, 1159, 1265, 1330
NlaIV GGNNCC 4 cut(s) 83, 512, 608, 1298
NmuCI GTSAC 3 cut(s) 334, 405, 1369
NsbI TGCGCA 1 cut(s) 878
NsiI ATGCAT 1 cut(s) 728
NspI RCATGY 1 cut(s) 569
NspV TTCGAA 1 cut(s) 377
PceI AGGCCT 2 cut(s) 479, 1065
PctI GAATGC 2 cut(s) 728, 1396
PdmI GAANNNNTTC 1 cut(s) 542
PfeI GAWTC 3 cut(s) 631, 985, 1192
PflMI CCANNNNNTGG 1 cut(s) 1275
PinAI ACCGGT 1 cut(s) 651
PleI GAGTC 2 cut(s) 157, 595
PpsI GAGTC 2 cut(s) 157, 595
PshAI GACNNNNGTC 1 cut(s) 221
PsiI TTATAA 1 cut(s) 446
Psp6I CCWGG 1 cut(s) 1417
PspGI CCWGG 1 cut(s) 1417
PspN4I GGNNCC 4 cut(s) 83, 512, 608, 1298
PspPI GGNCC 4 cut(s) 232, 254, 596, 1415
PstI CTGCAG 1 cut(s) 506
RsaI GTAC 3 cut(s) 564, 608, 1298
RsaNI GTAC 3 cut(s) 563, 607, 1297
RseI CAYNNNNRTG 1 cut(s) 17
SacII CCGCGG 2 cut(s) 613, 958
SaqAI TTAA 3 cut(s) 810, 1041, 1176
Sau3AI GATC 4 cut(s) 526, 915, 1078, 1344
Sau96I GGNCC 4 cut(s) 232, 254, 596, 1415
SchI GAGTC 2 cut(s) 158, 596
ScrFI CCNGG 1 cut(s) 1419
SduI GDGCHC 3 cut(s) 584, 709, 1008
SfaNI GCATC 3 cut(s) 292, 958, 1255
SfcI CTRYAG 2 cut(s) 502, 1023
Sfr303I CCGCGG 2 cut(s) 613, 958
SfuI TTCGAA 1 cut(s) 377
SgrBI CCGCGG 2 cut(s) 613, 958
SinI GGWCC 3 cut(s) 254, 596, 1415
SmiMI CAYNNNNRTG 1 cut(s) 17
SmlI CTYRAG 5 cut(s) 212, 695, 989, 1001, 1175
SmoI CTYRAG 5 cut(s) 212, 695, 989, 1001, 1175
Sse9I AATT 6 cut(s) 226, 366, 601, 716, 899, 1231
SseBI AGGCCT 2 cut(s) 479, 1065
SspMI CTAG 4 cut(s) 191, 291, 438, 1082
StuI AGGCCT 2 cut(s) 479, 1065
StyD4I CCNGG 1 cut(s) 1417
StyI CCWWGG 2 cut(s) 184, 592
TaaI ACNGT 3 cut(s) 254, 309, 644
TaiI ACGT 1 cut(s) 437
TaqI TCGA 5 cut(s) 141, 377, 384, 749, 1093
TasI AATT 6 cut(s) 226, 366, 601, 716, 899, 1231
TatI WGTACW 1 cut(s) 562
TauI GCSGC 6 cut(s) 279, 615, 892, 930, 957, 1174
TfiI GAWTC 3 cut(s) 631, 985, 1192
Tru1I TTAA 3 cut(s) 810, 1041, 1176
Tru9I TTAA 3 cut(s) 810, 1041, 1176
TscAI CASTG 4 cut(s) 151, 312, 511, 1401
TseFI GTSAC 3 cut(s) 334, 405, 1369
TseI GCWGC 5 cut(s) 501, 768, 839, 886, 904
Tsp45I GTSAC 3 cut(s) 334, 405, 1369
TspDTI ATGAA 6 cut(s) 476, 771, 872, 1315, 1368, 1403
TspRI CASTG 4 cut(s) 151, 312, 511, 1401
Van91I CCANNNNNTGG 1 cut(s) 1275
Vha464I CTTAAG 1 cut(s) 1175
VpaK11BI GGWCC 3 cut(s) 254, 596, 1415
XagI CCTNNNNNAGG 1 cut(s) 1026
XapI RAATTY 1 cut(s) 366
XbaI TCTAGA 1 cut(s) 1081
XceI RCATGY 1 cut(s) 569
XmnI GAANNNNTTC 1 cut(s) 542
XspI CTAG 4 cut(s) 191, 291, 438, 1082
Zsp2I ATGCAT 1 cut(s) 728
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.