Rorug01G0320500

3-ketoacyl-CoA synthase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0016938
Physical Location & Seq
Forward (+)
43963921 .. 43968541
4621 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0320500.1

Sequence Viewer

Length: 792 bp
ATGGAAATCCGTACCGCGTTCTCTGCTAAGGACACTATGCCAAAAAATGCTTCAGACCATACCCCTCAGACGACAGAAGAGAAGAGTCTCATCGATCAACCTCTCCCCGATCTAGGTCAAGAAGACACTGTTGGTGGAATTCTTCGATCCGATTTTACAAAGTATACTGTTGTTGCACGATTTTGGACATTCCTCCACCGCCAAGCTTCGTGGCTATCACAGTTGTTGGTGTCGAACCCAGAACTGTTCTCGGACAAAAGTTACAGCGGTACCACTTGCATATGGGATTTATGTGTTTTGATTAGTTCTCAGCAAAACTGTTGGTCCGTCGATGTTGGTCCCAGATTGCAATTCCGTGCTTCCCATGATCTCAAGGCACAACAAGGAGAGGCAACTATGGTTGCGAAGCTTGCTGACCCTGGATATGCATTTCAACTCTCTTCTTCTTTCCATTCTGCTGGTTTGGATGAGTTGTCGTCTTTTATCCCATTTATTTCGCTGCCTTCAAATGCATTGTCATTTGCTTTTAAGCGTCGCTTCGATCCTTCAGACAAGTTGAGGTTCTATGGTGGCTACATTCATCTGCCCTTTGGATGTCATCAAGACCAGGTTACAGAGGATGGTGGCAAACTCTCAATTGGTGAAAATATGATAGATGCTGTTGGGACTGCCACAGCCATTTCAACAAATCCATTGTGGGTTGTTAAGACAAGACTGCAAATCTACCTTCCAAATACATACGAGACAGTGCATTTGAACCGCAATGTTGGGCTGCTCCAGGGATACATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00062 ko01110 map00062 map01110
Pfam Domains
Protein Families
ACP_syn_III_C FAE1_CUT1_RppA

Protein Analysis

263

Amino Acids

29.34

Weight (kDa)

5.78

Isoelectric Point (pI)

38.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016938)

Species Orthologous Gene IDs
malus_domestica MD01G1119300.v1.1 MD07G1188100.v1.1
prunus_persica Prupe.2G226000_v2.0.a1
rosa_chinensis RchiOBHm_Chr1g0365261
rosa_laevigata RLG00000027436
rosa_multiflora Rmu_sc0020532.1_g000001
rosa_roxburghii Rroxscaffold_4G00291340 Rroxscaffold_4G00291880
rosa_rugosa Rorug01G0320500
rosa_samantha Rh1AG329500 Rh1BG290900 Rh1CG307800 Rh1DG322600
rosa_wichuraiana Rw1G029220

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 269
AccB1I GGYRCC 1 cut(s) 269
AccI GTMKAC 1 cut(s) 164
AccII CGCG 1 cut(s) 17
AciI CCGC 4 cut(s) 15, 199, 267, 760
AclWI GGATC 2 cut(s) 141, 536
AcsI RAATTY 1 cut(s) 138
AcuI CTGAAG 2 cut(s) 36, 531
AfaI GTAC 2 cut(s) 13, 271
AfiI CCNNNNNNNGG 1 cut(s) 113
AgsI TTSAA 4 cut(s) 434, 507, 684, 757
AjnI CCWGG 3 cut(s) 418, 606, 777
AjuI GAANNNNNNNTTGG 4 cut(s) 34, 66, 114, 146
AluBI AGCT 2 cut(s) 206, 409
AluI AGCT 2 cut(s) 206, 409
Alw26I GTCTC 2 cut(s) 92, 737
AlwI GGATC 2 cut(s) 141, 536
ApeKI GCWGC 2 cut(s) 499, 772
ApoI RAATTY 1 cut(s) 138
ArsI GACNNNNNNTTYG 4 cut(s) 500, 532, 736, 768
Asp718I GGTACC 1 cut(s) 269
AspS9I GGNCC 2 cut(s) 324, 338
AsuHPI GGTGA 1 cut(s) 653
AvaII GGWCC 2 cut(s) 324, 338
BaeI ACNNNNGTAYC 2 cut(s) 253, 286
BanI GGYRCC 1 cut(s) 269
BbsI GAAGAC 1 cut(s) 129
BbvI GCAGC 2 cut(s) 486, 759
BccI CCATC 1 cut(s) 614
BciT130I CCWGG 3 cut(s) 420, 608, 779
BciVI GTATCC 1 cut(s) 776
BcoDI GTCTC 2 cut(s) 92, 737
BfaI CTAG 1 cut(s) 113
BfuI GTATCC 1 cut(s) 776
BisI GCNGC 2 cut(s) 500, 773
BlsI GCNGC 2 cut(s) 501, 774
Bme1390I CCNGG 3 cut(s) 420, 608, 779
Bme18I GGWCC 2 cut(s) 324, 338
BmgT120I GGNCC 2 cut(s) 324, 338
BmiI GGNNCC 2 cut(s) 271, 340
BmrFI CCNGG 3 cut(s) 420, 608, 779
BmsI GCATC 1 cut(s) 646
BpiI GAAGAC 1 cut(s) 129
BpmI CTGGAG 1 cut(s) 761
Bpu10I CCTNAGC 1 cut(s) 27
BpuEI CTTGAG 1 cut(s) 356
Bsa29I ATCGAT 1 cut(s) 93
BsaJI CCNNGG 2 cut(s) 418, 778
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse3DI GCAATG 1 cut(s) 769
BseBI CCWGG 3 cut(s) 420, 608, 779
BseCI ATCGAT 1 cut(s) 93
BseDI CCNNGG 2 cut(s) 418, 778
BseGI GGATG 3 cut(s) 472, 599, 625
BseLI CCNNNNNNNGG 1 cut(s) 113
BseMI GCAATG 1 cut(s) 769
BseMII CTCAG 2 cut(s) 80, 323
BseXI GCAGC 2 cut(s) 486, 759
Bsh1236I CGCG 1 cut(s) 17
BshNI GGYRCC 1 cut(s) 269
BshVI ATCGAT 1 cut(s) 93
BslFI GGGAC 2 cut(s) 324, 679
BslI CCNNNNNNNGG 1 cut(s) 113
BsmAI GTCTC 2 cut(s) 92, 737
BsmFI GGGAC 2 cut(s) 324, 679
Bsp143I GATC 5 cut(s) 94, 109, 146, 367, 541
BspACI CCGC 4 cut(s) 15, 199, 267, 760
BspCNI CTCAG 2 cut(s) 79, 322
BspDI ATCGAT 1 cut(s) 93
BspFNI CGCG 1 cut(s) 17
BspLI GGNNCC 2 cut(s) 271, 340
BspPI GGATC 2 cut(s) 141, 536
BspT107I GGYRCC 1 cut(s) 269
BsrDI GCAATG 1 cut(s) 769
BssECI CCNNGG 2 cut(s) 418, 778
BssMI GATC 5 cut(s) 94, 109, 146, 367, 541
BssNAI GTATAC 1 cut(s) 165
Bst1107I GTATAC 1 cut(s) 165
Bst2UI CCWGG 3 cut(s) 420, 608, 779
Bst4CI ACNGT 6 cut(s) 130, 169, 222, 246, 320, 748
Bst6I CTCTTC 3 cut(s) 72, 77, 445
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 3 cut(s) 27, 66, 309
BstF5I GGATG 3 cut(s) 472, 599, 625
BstFNI CGCG 1 cut(s) 17
BstKTI GATC 5 cut(s) 97, 112, 149, 370, 544
BstMAI GTCTC 2 cut(s) 92, 737
BstMBI GATC 5 cut(s) 94, 109, 146, 367, 541
BstMWI GCNNNNNNNGC 2 cut(s) 23, 410
BstNI CCWGG 3 cut(s) 420, 608, 779
BstSCI CCNGG 3 cut(s) 418, 606, 777
BstUI CGCG 1 cut(s) 17
BstV1I GCAGC 2 cut(s) 486, 759
BstV2I GAAGAC 1 cut(s) 129
BstXI CCANNNNNNTGG 1 cut(s) 458
BstZ17I GTATAC 1 cut(s) 165
Bsu15I ATCGAT 1 cut(s) 93
BsuI GTATCC 1 cut(s) 776
BsuTUI ATCGAT 1 cut(s) 93
BtsCI GGATG 3 cut(s) 472, 599, 625
BtsIMutI CAGTG 2 cut(s) 126, 753
Cac8I GCNNGC 1 cut(s) 411
Cfr13I GGNCC 2 cut(s) 324, 338
ClaI ATCGAT 1 cut(s) 93
CseI GACGC 1 cut(s) 521
CsiI ACCWGGT 1 cut(s) 606
Csp6I GTAC 2 cut(s) 12, 270
CspCI CAANNNNNGTGG 2 cut(s) 191, 226
CviAII CATG 1 cut(s) 365
CviJI RGCY 6 cut(s) 206, 214, 409, 573, 677, 772
CviKI_1 RGCY 6 cut(s) 206, 214, 409, 573, 677, 772
CviQI GTAC 2 cut(s) 12, 270
DdeI CTNAG 3 cut(s) 27, 66, 309
DpnI GATC 5 cut(s) 96, 111, 148, 369, 543
DpnII GATC 5 cut(s) 94, 109, 146, 367, 541
Eam1104I CTCTTC 3 cut(s) 72, 77, 445
EarI CTCTTC 3 cut(s) 72, 77, 445
Eco47I GGWCC 2 cut(s) 324, 338
Eco57I CTGAAG 2 cut(s) 36, 531
EcoRI GAATTC 1 cut(s) 138
EcoRII CCWGG 3 cut(s) 418, 606, 777
EcoT22I ATGCAT 2 cut(s) 430, 514
FaeI CATG 1 cut(s) 368
FalI AAGNNNNNCTT 2 cut(s) 521, 553
FaqI GGGAC 2 cut(s) 324, 679
FatI CATG 1 cut(s) 364
FauNDI CATATG 2 cut(s) 281, 788
FblI GTMKAC 1 cut(s) 164
Fnu4HI GCNGC 2 cut(s) 500, 773
FokI GGATG 3 cut(s) 479, 606, 632
Fsp4HI GCNGC 2 cut(s) 500, 773
FspBI CTAG 1 cut(s) 113
GluI GCNGC 2 cut(s) 500, 773
GsuI CTGGAG 1 cut(s) 761
HgaI GACGC 1 cut(s) 521
Hin1II CATG 1 cut(s) 368
HindIII AAGCTT 2 cut(s) 204, 407
HinfI GANTC 1 cut(s) 85
HphI GGTGA 1 cut(s) 653
Hpy166II GTNNAC 1 cut(s) 165
Hpy188I TCNGA 5 cut(s) 55, 69, 151, 253, 550
Hpy188III TCNNGA 2 cut(s) 119, 602
Hpy8I GTNNAC 1 cut(s) 165
Hpy99I CGWCG 2 cut(s) 332, 537
HpyAV CCTTC 3 cut(s) 513, 555, 737
HpyCH4III ACNGT 6 cut(s) 130, 169, 222, 246, 320, 748
HpyCH4V TGCA 7 cut(s) 176, 279, 349, 428, 512, 718, 751
HpyF10VI GCNNNNNNNGC 2 cut(s) 23, 410
HpyF3I CTNAG 3 cut(s) 27, 66, 309
Hsp92II CATG 1 cut(s) 368
KpnI GGTACC 1 cut(s) 273
Kzo9I GATC 5 cut(s) 94, 109, 146, 367, 541
LmnI GCTCC 1 cut(s) 780
LpnPI CCDG 8 cut(s) 252, 355, 405, 432, 444, 593, 620, 764
Lsp1109I GCAGC 2 cut(s) 486, 759
LweI GCATC 1 cut(s) 646
MabI ACCWGGT 1 cut(s) 606
MaeI CTAG 1 cut(s) 113
MaeIII GTNAC 2 cut(s) 260, 610
MalI GATC 5 cut(s) 96, 111, 148, 369, 543
MboI GATC 5 cut(s) 94, 109, 146, 367, 541
MboII GAAGA 6 cut(s) 89, 94, 134, 134, 432, 435
MfeI CAATTG 1 cut(s) 636
MluCI AATT 3 cut(s) 138, 350, 636
MlyI GAGTC 1 cut(s) 94
MnlI CCTC 6 cut(s) 75, 111, 203, 382, 552, 610
Mph1103I ATGCAT 2 cut(s) 430, 514
MseI TTAA 2 cut(s) 528, 705
MspA1I CMGCKG 1 cut(s) 267
MspR9I CCNGG 3 cut(s) 420, 608, 779
MunI CAATTG 1 cut(s) 636
MvaI CCWGG 3 cut(s) 420, 608, 779
MvnI CGCG 1 cut(s) 17
MwoI GCNNNNNNNGC 2 cut(s) 23, 410
NdeI CATATG 2 cut(s) 281, 788
NdeII GATC 5 cut(s) 94, 109, 146, 367, 541
NlaIII CATG 1 cut(s) 368
NlaIV GGNNCC 2 cut(s) 271, 340
NsiI ATGCAT 2 cut(s) 430, 514
PkrI GCNGC 2 cut(s) 501, 774
PleI GAGTC 1 cut(s) 93
PpsI GAGTC 1 cut(s) 93
Psp6I CCWGG 3 cut(s) 418, 606, 777
PspGI CCWGG 3 cut(s) 418, 606, 777
PspN4I GGNNCC 2 cut(s) 271, 340
PspPI GGNCC 2 cut(s) 324, 338
RsaI GTAC 2 cut(s) 13, 271
RsaNI GTAC 2 cut(s) 12, 270
SaqAI TTAA 2 cut(s) 528, 705
SatI GCNGC 2 cut(s) 500, 773
Sau3AI GATC 5 cut(s) 94, 109, 146, 367, 541
Sau96I GGNCC 2 cut(s) 324, 338
SchI GAGTC 1 cut(s) 94
ScrFI CCNGG 3 cut(s) 420, 608, 779
SetI ASST 7 cut(s) 103, 118, 208, 411, 563, 612, 729
SexAI ACCWGGT 1 cut(s) 606
SfaNI GCATC 1 cut(s) 646
SinI GGWCC 2 cut(s) 324, 338
SmlI CTYRAG 1 cut(s) 371
SmoI CTYRAG 1 cut(s) 371
Sse9I AATT 3 cut(s) 138, 350, 636
SsiI CCGC 4 cut(s) 15, 199, 267, 760
SspMI CTAG 1 cut(s) 113
StyD4I CCNGG 3 cut(s) 418, 606, 777
TaaI ACNGT 6 cut(s) 130, 169, 222, 246, 320, 748
TaqI TCGA 5 cut(s) 93, 145, 233, 330, 540
TasI AATT 3 cut(s) 138, 350, 636
Tru1I TTAA 2 cut(s) 528, 705
Tru9I TTAA 2 cut(s) 528, 705
TscAI CASTG 2 cut(s) 133, 753
TseI GCWGC 2 cut(s) 499, 772
TspDTI ATGAA 1 cut(s) 569
TspGWI ACGGA 2 cut(s) 316, 344
TspRI CASTG 2 cut(s) 133, 753
VpaK11BI GGWCC 2 cut(s) 324, 338
XapI RAATTY 1 cut(s) 138
XmiI GTMKAC 1 cut(s) 164
XspI CTAG 1 cut(s) 113
Zsp2I ATGCAT 2 cut(s) 430, 514
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.