MD07G1298600.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0018088
Physical Location & Seq
Forward (+)
35815759 .. 35816248
490 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1298600.v1.1.491

Sequence Viewer

Length: 222 bp
ATGGCTGTGTATGTGTCGATGCCTTTTCTAGTTGCTGCCGCAACCGGGATATATTTCCTCGACAAAAACCATTACCAACCAAAGGAACTCGGAGCTGGGATTCGAGCAACCATCCAAGATGTTGTAGCAAAAGCGAAGGCCAAGGCGAACACTACTCAGATGCCAAAGTTGGCACCCCAATTTGACGGATTAGACTCGTTTGAAACCTTGGTCGATCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

74

Amino Acids

7.97

Weight (kDa)

8.03

Isoelectric Point (pI)

32.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018088)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g32870
malus_domestica MD07G1298600.v1.1
pyrus_communis pycom07g27100
rosa_chinensis RchiOBHm_Chr1g0382821
rosa_roxburghii Rroxscaffold_4G00277870
rosa_rugosa Rorug01G0436500
rosa_samantha Rh1AG461500 Rh1BG418100 Rh1CG432000 Rh1DG450300
rosa_wichuraiana Rw1G041030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 172
AciI CCGC 1 cut(s) 39
AfiI CCNNNNNNNGG 2 cut(s) 45, 82
AgsI TTSAA 1 cut(s) 203
AluBI AGCT 1 cut(s) 95
AluI AGCT 1 cut(s) 95
AoxI GGCC 1 cut(s) 138
ApeKI GCWGC 1 cut(s) 35
AsuC2I CCSGG 1 cut(s) 46
BanI GGYRCC 1 cut(s) 172
BbvI GCAGC 1 cut(s) 22
BccI CCATC 1 cut(s) 119
BcnI CCSGG 1 cut(s) 46
BfaI CTAG 1 cut(s) 29
BisI GCNGC 2 cut(s) 36, 39
BlsI GCNGC 2 cut(s) 37, 40
Bme1390I CCNGG 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 174
BmrFI CCNGG 1 cut(s) 46
BmsI GCATC 2 cut(s) 9, 150
BpuMI CCSGG 1 cut(s) 46
BsaJI CCNNGG 2 cut(s) 141, 207
Bsc4I CCNNNNNNNGG 2 cut(s) 45, 82
BseDI CCNNGG 2 cut(s) 141, 207
BseGI GGATG 1 cut(s) 111
BseLI CCNNNNNNNGG 2 cut(s) 45, 82
BseMII CTCAG 1 cut(s) 170
BseXI GCAGC 1 cut(s) 22
BseYI CCCAGC 1 cut(s) 95
Bsh1285I CGRYCG 1 cut(s) 217
BshFI GGCC 1 cut(s) 140
BshNI GGYRCC 1 cut(s) 172
BsiEI CGRYCG 1 cut(s) 217
BsiSI CCGG 1 cut(s) 45
BslI CCNNNNNNNGG 2 cut(s) 45, 82
BsnI GGCC 1 cut(s) 140
Bsp143I GATC 1 cut(s) 214
BspACI CCGC 1 cut(s) 39
BspANI GGCC 1 cut(s) 140
BspCNI CTCAG 1 cut(s) 169
BspLI GGNNCC 1 cut(s) 174
BspT107I GGYRCC 1 cut(s) 172
BssECI CCNNGG 2 cut(s) 141, 207
BssMI GATC 1 cut(s) 214
BssT1I CCWWGG 2 cut(s) 141, 207
BstDEI CTNAG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 111
BstKTI GATC 1 cut(s) 217
BstMBI GATC 1 cut(s) 214
BstMCI CGRYCG 1 cut(s) 217
BstSCI CCNGG 1 cut(s) 44
BstV1I GCAGC 1 cut(s) 22
BsuRI GGCC 1 cut(s) 140
BtsCI GGATG 1 cut(s) 111
CviJI RGCY 3 cut(s) 5, 95, 140
CviKI_1 RGCY 3 cut(s) 5, 95, 140
DdeI CTNAG 1 cut(s) 156
DpnI GATC 1 cut(s) 216
DpnII GATC 1 cut(s) 214
Eco130I CCWWGG 2 cut(s) 141, 207
EcoT14I CCWWGG 2 cut(s) 141, 207
ErhI CCWWGG 2 cut(s) 141, 207
FaiI YATR 2 cut(s) 12, 52
Fnu4HI GCNGC 2 cut(s) 36, 39
FokI GGATG 1 cut(s) 98
Fsp4HI GCNGC 2 cut(s) 36, 39
FspBI CTAG 1 cut(s) 29
GluI GCNGC 2 cut(s) 36, 39
GsaI CCCAGC 1 cut(s) 99
HaeIII GGCC 1 cut(s) 140
HapII CCGG 1 cut(s) 45
HinfI GANTC 2 cut(s) 100, 194
HpaII CCGG 1 cut(s) 45
Hpy188I TCNGA 2 cut(s) 92, 159
HpyAV CCTTC 1 cut(s) 130
HpyF3I CTNAG 1 cut(s) 156
Kzo9I GATC 1 cut(s) 214
LmnI GCTCC 1 cut(s) 92
LpnPI CCDG 2 cut(s) 58, 81
Lsp1109I GCAGC 1 cut(s) 22
LweI GCATC 2 cut(s) 9, 150
MaeI CTAG 1 cut(s) 29
MalI GATC 1 cut(s) 216
MboI GATC 1 cut(s) 214
MluCI AATT 1 cut(s) 179
MlyI GAGTC 1 cut(s) 188
MnlI CCTC 1 cut(s) 68
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 1 cut(s) 46
NciI CCSGG 1 cut(s) 46
NdeII GATC 1 cut(s) 214
NlaIV GGNNCC 1 cut(s) 174
PfeI GAWTC 1 cut(s) 100
PkrI GCNGC 2 cut(s) 37, 40
Ple19I CGATCG 1 cut(s) 217
PleI GAGTC 1 cut(s) 188
PpsI GAGTC 1 cut(s) 188
PspFI CCCAGC 1 cut(s) 95
PspN4I GGNNCC 1 cut(s) 174
PvuI CGATCG 1 cut(s) 217
SatI GCNGC 2 cut(s) 36, 39
Sau3AI GATC 1 cut(s) 214
SchI GAGTC 1 cut(s) 188
ScrFI CCNGG 1 cut(s) 46
SetI ASST 2 cut(s) 97, 209
SfaNI GCATC 2 cut(s) 9, 150
Sse9I AATT 1 cut(s) 179
SsiI CCGC 1 cut(s) 39
SspMI CTAG 1 cut(s) 29
StyD4I CCNGG 1 cut(s) 44
StyI CCWWGG 2 cut(s) 141, 207
TaqI TCGA 4 cut(s) 17, 60, 103, 213
TasI AATT 1 cut(s) 179
TauI GCSGC 1 cut(s) 41
TfiI GAWTC 1 cut(s) 100
TseI GCWGC 1 cut(s) 35
TspGWI ACGGA 1 cut(s) 201
XspI CTAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.