Rorug01G0436500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0018088
Physical Location & Seq
Forward (+)
53541490 .. 53544394
2905 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0436500.1

Sequence Viewer

Length: 1071 bp
ATGGGTAAGGGAGGGAACATGGAGGAGAACATGGCTGCTTGGCTTGTTGGTATCAACACCCTCAAGATTCAACCTTTCAAGCTCCCTGATCTTGGACCTCATGATGTTAGGATTCGGATGAAGGCTGTTGGGATATGTGGGAGTGATGTTCACTACCTCAAGGCCATGAGGTGTGCAGATTTTATAGTTAAAGAGCCAATGGTAATTGGGCATGAGTGTGCTGGGATCATAGAGGAAGTTGGGGCTGAAGTCAAGCATCTGGCACCTGGTGACCGCGTGGCACTAGAGCCCGGTATCAGTTGCTGGCGATGTGAGTCCTGCAAAGGAGGTCGCTACAATCTATGCCCGGATATGAAGTTTTTCGCCACTCCACCAGTTCATGGTTCACTGGCAAACCAGGTTGTCCATCCTGCAGACCTGTGTTTTAAACTGCCAGAGAATGTGAGTTTGGAGGAAGGGGCAATGTGTGAGCCCTTGAGTGTTGGTGTTCATGCTTGTCGACGAGCTAATGTTGGCCCAGAAACAAATGTTTTGGTCATGGGAGCAGGACCTATAGGGCTTGTTACACTGCTAGCTGCTCGCGCTTTTGGGGCACCCAGAATTGTCATTGTGGACGTGGATGACCACCGTTTATCAGTTGCAAAGACTCTTGGTGCAGATGAGATCGTAAAAGTTTCAACAAACATCCAGGATGTACCTGAAGAAGTGGTTCAGATACGTAAAGCTATGGGAGCTGGAGTGGACGTGACCTTTGATTGTGTAGGCTTTGATAAAACCATGTCAACAGGTCTGCGTGCTACTCGTCCTGGTGGCAGAGTTTGCCTTGTGGGAATGGGTCACGATGCGATGACTCTCCCACTTACTTCAGCTTCTGCCAGGGAGGTAGATGTGATTGGAATTTTCCGATACAAGAACACATGGCCTCTATGCCTTGAGTTTTTGAGAAGTGGTAAGATCGATGTGAAGCCCCTCATAACTCATCGGTTTGGGTTTTCTCAAAAGGAGGTGGAAGACGCCTTCGCAACCAGTGCTCGTGGAGGCAATGCCATTAAGGTCATGTTTAATCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

356

Amino Acids

38.35

Weight (kDa)

6.79

Isoelectric Point (pI)

25.95

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 32 - 146 7e-29 Alcohol dehydrogenase GroES-like domain
Glu_dehyd_C PF16912 153 - 282 8.9e-11 Glucose dehydrogenase C-terminus
ADH_zinc_N PF00107 184 - 314 1.2e-28 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 217 - 347 8.6e-09 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0018088)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g32870
malus_domestica MD07G1298600.v1.1
pyrus_communis pycom07g27100
rosa_chinensis RchiOBHm_Chr1g0382821
rosa_roxburghii Rroxscaffold_4G00277870
rosa_rugosa Rorug01G0436500
rosa_samantha Rh1AG461500 Rh1BG418100 Rh1CG432000 Rh1DG450300
rosa_wichuraiana Rw1G041030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 262, 592
AccB7I CCANNNNNTGG 1 cut(s) 380
AccI GTMKAC 1 cut(s) 499
AccII CGCG 2 cut(s) 276, 582
AciI CCGC 1 cut(s) 274
AclWI GGATC 1 cut(s) 233
AcsI RAATTY 1 cut(s) 897
AcuI CTGAAG 3 cut(s) 267, 720, 849
AcyI GRCGYC 1 cut(s) 1014
AdeI CACNNNGTG 1 cut(s) 269
AfaI GTAC 1 cut(s) 696
AfiI CCNNNNNNNGG 2 cut(s) 92, 380
AgsI TTSAA 3 cut(s) 71, 79, 678
AjiI CACGTC 2 cut(s) 616, 745
AjnI CCWGG 5 cut(s) 265, 396, 687, 805, 875
AjuI GAANNNNNNNTTGG 2 cut(s) 431, 463
AluBI AGCT 6 cut(s) 82, 506, 575, 725, 734, 869
AluI AGCT 6 cut(s) 82, 506, 575, 725, 734, 869
Alw21I GWGCWC 1 cut(s) 1033
AlwI GGATC 1 cut(s) 233
AlwNI CAGNNNCTG 2 cut(s) 303, 872
AoxI GGCC 3 cut(s) 162, 514, 920
ApeKI GCWGC 2 cut(s) 35, 575
ApoI RAATTY 1 cut(s) 897
ArsI GACNNNNNNTTYG 2 cut(s) 734, 766
Asp700I GAANNNNTTC 2 cut(s) 359, 708
AspLEI GCGC 1 cut(s) 584
AspS9I GGNCC 3 cut(s) 95, 515, 548
AsuC2I CCSGG 2 cut(s) 291, 347
AsuHPI GGTGA 1 cut(s) 281
AsuNHI GCTAGC 1 cut(s) 571
AvaII GGWCC 2 cut(s) 95, 548
BaeGI GKGCMC 1 cut(s) 595
BanI GGYRCC 2 cut(s) 262, 592
BanII GRGCYC 2 cut(s) 291, 474
BauI CACGAG 1 cut(s) 1032
BbsI GAAGAC 1 cut(s) 1017
Bbv12I GWGCWC 1 cut(s) 1033
BbvI GCAGC 2 cut(s) 22, 562
BccI CCATC 1 cut(s) 414
BciT130I CCWGG 5 cut(s) 267, 398, 689, 807, 877
BcnI CCSGG 2 cut(s) 291, 347
BfaI CTAG 2 cut(s) 284, 572
BfmI CTRYAG 2 cut(s) 411, 552
BisI GCNGC 2 cut(s) 36, 576
BlsI GCNGC 2 cut(s) 37, 577
Bme1390I CCNGG 7 cut(s) 267, 291, 347, 398, 689, 807, 877
Bme18I GGWCC 2 cut(s) 95, 548
BmgBI CACGTC 2 cut(s) 616, 745
BmgT120I GGNCC 3 cut(s) 95, 515, 548
BmiI GGNNCC 2 cut(s) 264, 594
BmrFI CCNGG 7 cut(s) 267, 291, 347, 398, 689, 807, 877
BmsI GCATC 2 cut(s) 265, 832
BmtI GCTAGC 1 cut(s) 575
BpiI GAAGAC 1 cut(s) 1017
BpmI CTGGAG 1 cut(s) 756
BpuEI CTTGAG 4 cut(s) 47, 143, 496, 953
BpuMI CCSGG 2 cut(s) 291, 347
Bsa29I ATCGAT 1 cut(s) 957
BsaAI YACGTR 1 cut(s) 719
BsaHI GRCGYC 1 cut(s) 1014
BsaJI CCNNGG 1 cut(s) 876
BsaXI ACNNNNNCTCC 4 cut(s) 723, 729, 753, 759
Bsc4I CCNNNNNNNGG 2 cut(s) 92, 380
Bse1I ACTGG 3 cut(s) 374, 393, 1026
Bse3DI GCAATG 2 cut(s) 468, 1048
BseBI CCWGG 5 cut(s) 267, 398, 689, 807, 877
BseCI ATCGAT 1 cut(s) 957
BseDI CCNNGG 1 cut(s) 876
BseGI GGATG 5 cut(s) 123, 406, 625, 684, 697
BseLI CCNNNNNNNGG 2 cut(s) 92, 380
BseMI GCAATG 2 cut(s) 468, 1048
BseNI ACTGG 3 cut(s) 374, 393, 1026
BseRI GAGGAG 1 cut(s) 38
BseSI GKGCMC 1 cut(s) 595
BseXI GCAGC 2 cut(s) 22, 562
BseYI CCCAGC 1 cut(s) 221
BsgI GTGCAG 2 cut(s) 195, 675
Bsh1236I CGCG 2 cut(s) 276, 582
BshFI GGCC 3 cut(s) 164, 516, 922
BshNI GGYRCC 2 cut(s) 262, 592
BshVI ATCGAT 1 cut(s) 957
BsiHKAI GWGCWC 1 cut(s) 1033
BsiSI CCGG 2 cut(s) 291, 347
BslI CCNNNNNNNGG 2 cut(s) 92, 380
BsnI GGCC 3 cut(s) 164, 516, 922
Bsp1286I GDGCHC 4 cut(s) 291, 474, 595, 1033
Bsp143I GATC 4 cut(s) 88, 225, 663, 954
BspACI CCGC 1 cut(s) 274
BspANI GGCC 3 cut(s) 164, 516, 922
BspDI ATCGAT 1 cut(s) 957
BspFNI CGCG 2 cut(s) 276, 582
BspHI TCATGA 1 cut(s) 100
BspLI GGNNCC 2 cut(s) 264, 594
BspMAI CTGCAG 1 cut(s) 415
BspOI GCTAGC 1 cut(s) 575
BspPI GGATC 1 cut(s) 233
BspT107I GGYRCC 2 cut(s) 262, 592
BsrDI GCAATG 2 cut(s) 468, 1048
BsrI ACTGG 3 cut(s) 374, 393, 1026
BssECI CCNNGG 1 cut(s) 876
BssMI GATC 4 cut(s) 88, 225, 663, 954
BssNI GRCGYC 1 cut(s) 1014
BssSI CACGAG 1 cut(s) 1032
Bst2BI CACGAG 1 cut(s) 1032
Bst2UI CCWGG 5 cut(s) 267, 398, 689, 807, 877
Bst4CI ACNGT 1 cut(s) 629
BstACI GRCGYC 1 cut(s) 1014
BstAPI GCANNNNNTGC 2 cut(s) 819, 1028
BstBAI YACGTR 1 cut(s) 719
BstC8I GCNNGC 4 cut(s) 305, 573, 580, 795
BstEII GGTNACC 1 cut(s) 269
BstF5I GGATG 5 cut(s) 123, 406, 625, 684, 697
BstFNI CGCG 2 cut(s) 276, 582
BstHHI GCGC 1 cut(s) 584
BstKTI GATC 4 cut(s) 91, 228, 666, 957
BstMBI GATC 4 cut(s) 88, 225, 663, 954
BstMWI GCNNNNNNNGC 5 cut(s) 581, 590, 731, 819, 1028
BstNI CCWGG 5 cut(s) 267, 398, 689, 807, 877
BstPI GGTNACC 1 cut(s) 269
BstSCI CCNGG 7 cut(s) 265, 289, 345, 396, 687, 805, 875
BstSFI CTRYAG 2 cut(s) 411, 552
BstSLI GKGCMC 1 cut(s) 595
BstSNI TACGTA 1 cut(s) 719
BstUI CGCG 2 cut(s) 276, 582
BstV1I GCAGC 2 cut(s) 22, 562
BstV2I GAAGAC 1 cut(s) 1017
Bsu15I ATCGAT 1 cut(s) 957
BsuRI GGCC 3 cut(s) 164, 516, 922
BsuTUI ATCGAT 1 cut(s) 957
BtgZI GCGATG 2 cut(s) 322, 860
BtrI CACGTC 2 cut(s) 616, 745
BtsCI GGATG 5 cut(s) 123, 406, 625, 684, 697
BtsI GCAGTG 1 cut(s) 566
BtsIMutI CAGTG 3 cut(s) 386, 566, 1033
Cac8I GCNNGC 4 cut(s) 305, 573, 580, 795
CaiI CAGNNNCTG 2 cut(s) 303, 872
CciI TCATGA 1 cut(s) 100
CfoI GCGC 1 cut(s) 584
Cfr13I GGNCC 3 cut(s) 95, 515, 548
ClaI ATCGAT 1 cut(s) 957
CseI GACGC 1 cut(s) 1022
CsiI ACCWGGT 2 cut(s) 265, 396
Csp6I GTAC 1 cut(s) 695
CviQI GTAC 1 cut(s) 695
DpnI GATC 4 cut(s) 90, 227, 665, 956
DpnII GATC 4 cut(s) 88, 225, 663, 954
DraI TTTAAA 1 cut(s) 427
DraIII CACNNNGTG 1 cut(s) 269
Eco105I TACGTA 1 cut(s) 719
Eco24I GRGCYC 2 cut(s) 291, 474
Eco47I GGWCC 2 cut(s) 95, 548
Eco57I CTGAAG 3 cut(s) 267, 720, 849
Eco91I GGTNACC 1 cut(s) 269
EcoO109I RGGNCCY 1 cut(s) 548
EcoO65I GGTNACC 1 cut(s) 269
EcoRII CCWGG 5 cut(s) 265, 396, 687, 805, 875
EcoT38I GRGCYC 2 cut(s) 291, 474
FblI GTMKAC 1 cut(s) 499
Fnu4HI GCNGC 2 cut(s) 36, 576
FokI GGATG 5 cut(s) 130, 393, 632, 671, 704
FriOI GRGCYC 2 cut(s) 291, 474
Fsp4HI GCNGC 2 cut(s) 36, 576
FspBI CTAG 2 cut(s) 284, 572
GlaI GCGC 1 cut(s) 583
GluI GCNGC 2 cut(s) 36, 576
GsaI CCCAGC 1 cut(s) 225
GsuI CTGGAG 1 cut(s) 756
HaeIII GGCC 3 cut(s) 164, 516, 922
HapII CCGG 2 cut(s) 291, 347
HgaI GACGC 1 cut(s) 1022
HhaI GCGC 1 cut(s) 584
Hin1I GRCGYC 1 cut(s) 1014
Hin6I GCGC 1 cut(s) 582
HinP1I GCGC 1 cut(s) 582
HincII GTYRAC 2 cut(s) 500, 783
HindII GTYRAC 2 cut(s) 500, 783
HinfI GANTC 5 cut(s) 67, 112, 314, 646, 850
HpaII CCGG 2 cut(s) 291, 347
HphI GGTGA 1 cut(s) 281
Hpy166II GTNNAC 6 cut(s) 151, 386, 500, 613, 742, 783
Hpy188I TCNGA 3 cut(s) 117, 714, 905
Hpy188III TCNNGA 3 cut(s) 64, 101, 839
Hpy8I GTNNAC 6 cut(s) 151, 386, 500, 613, 742, 783
Hpy99I CGWCG 1 cut(s) 504
HpyAV CCTTC 3 cut(s) 115, 449, 1027
HpyCH4III ACNGT 1 cut(s) 629
HpyCH4IV ACGT 3 cut(s) 615, 718, 744
HpyCH4V TGCA 5 cut(s) 176, 321, 413, 641, 656
HpyF10VI GCNNNNNNNGC 5 cut(s) 581, 590, 731, 819, 1028
HpySE526I ACGT 3 cut(s) 615, 718, 744
Hsp92I GRCGYC 1 cut(s) 1014
HspAI GCGC 1 cut(s) 582
Kzo9I GATC 4 cut(s) 88, 225, 663, 954
LmnI GCTCC 3 cut(s) 87, 542, 731
Lsp1109I GCAGC 2 cut(s) 22, 562
LweI GCATC 2 cut(s) 265, 832
MabI ACCWGGT 2 cut(s) 265, 396
MaeI CTAG 2 cut(s) 284, 572
MaeII ACGT 3 cut(s) 615, 718, 744
MaeIII GTNAC 4 cut(s) 269, 562, 745, 836
MalI GATC 4 cut(s) 90, 227, 665, 956
MboI GATC 4 cut(s) 88, 225, 663, 954
MboII GAAGA 2 cut(s) 713, 1022
MhlI GDGCHC 4 cut(s) 291, 474, 595, 1033
MluCI AATT 3 cut(s) 204, 600, 897
MlyI GAGTC 3 cut(s) 323, 640, 844
MroXI GAANNNNTTC 2 cut(s) 359, 708
MseI TTAA 4 cut(s) 189, 426, 1050, 1062
MslI CAYNNNNRTG 1 cut(s) 216
MspI CCGG 2 cut(s) 291, 347
MspR9I CCNGG 7 cut(s) 267, 291, 347, 398, 689, 807, 877
MvaI CCWGG 5 cut(s) 267, 398, 689, 807, 877
MvnI CGCG 2 cut(s) 276, 582
MwoI GCNNNNNNNGC 5 cut(s) 581, 590, 731, 819, 1028
NciI CCSGG 2 cut(s) 291, 347
NdeII GATC 4 cut(s) 88, 225, 663, 954
NheI GCTAGC 1 cut(s) 571
NlaIV GGNNCC 2 cut(s) 264, 594
NmuCI GTSAC 3 cut(s) 269, 745, 836
PagI TCATGA 1 cut(s) 100
PdmI GAANNNNTTC 2 cut(s) 359, 708
PfeI GAWTC 2 cut(s) 67, 112
PflMI CCANNNNNTGG 1 cut(s) 380
PfoI TCCNGGA 1 cut(s) 687
PkrI GCNGC 2 cut(s) 37, 577
PleI GAGTC 3 cut(s) 322, 640, 844
PpsI GAGTC 3 cut(s) 322, 640, 844
Ppu21I YACGTR 1 cut(s) 719
PpuMI RGGWCCY 1 cut(s) 548
Psp5II RGGWCCY 1 cut(s) 548
Psp6I CCWGG 5 cut(s) 265, 396, 687, 805, 875
PspEI GGTNACC 1 cut(s) 269
PspFI CCCAGC 1 cut(s) 221
PspGI CCWGG 5 cut(s) 265, 396, 687, 805, 875
PspN4I GGNNCC 2 cut(s) 264, 594
PspPI GGNCC 3 cut(s) 95, 515, 548
PspPPI RGGWCCY 1 cut(s) 548
PstI CTGCAG 1 cut(s) 415
PstNI CAGNNNCTG 2 cut(s) 303, 872
RsaI GTAC 1 cut(s) 696
RsaNI GTAC 1 cut(s) 695
RseI CAYNNNNRTG 1 cut(s) 216
SalI GTCGAC 1 cut(s) 498
SaqAI TTAA 4 cut(s) 189, 426, 1050, 1062
SatI GCNGC 2 cut(s) 36, 576
Sau3AI GATC 4 cut(s) 88, 225, 663, 954
Sau96I GGNCC 3 cut(s) 95, 515, 548
SchI GAGTC 3 cut(s) 323, 640, 844
ScrFI CCNGG 7 cut(s) 267, 291, 347, 398, 689, 807, 877
SduI GDGCHC 4 cut(s) 291, 474, 595, 1033
SexAI ACCWGGT 2 cut(s) 265, 396
SfaNI GCATC 2 cut(s) 265, 832
SfcI CTRYAG 2 cut(s) 411, 552
SinI GGWCC 2 cut(s) 95, 548
SmiMI CAYNNNNRTG 1 cut(s) 216
SmlI CTYRAG 4 cut(s) 62, 158, 475, 932
SmoI CTYRAG 4 cut(s) 62, 158, 475, 932
SnaBI TACGTA 1 cut(s) 719
Sse9I AATT 3 cut(s) 204, 600, 897
SsiI CCGC 1 cut(s) 274
SspMI CTAG 2 cut(s) 284, 572
StyD4I CCNGG 7 cut(s) 265, 289, 345, 396, 687, 805, 875
TaaI ACNGT 1 cut(s) 629
TaiI ACGT 3 cut(s) 618, 721, 747
TaqI TCGA 2 cut(s) 499, 957
TasI AATT 3 cut(s) 204, 600, 897
TfiI GAWTC 2 cut(s) 67, 112
Tru1I TTAA 4 cut(s) 189, 426, 1050, 1062
Tru9I TTAA 4 cut(s) 189, 426, 1050, 1062
TscAI CASTG 3 cut(s) 393, 573, 1033
TseFI GTSAC 3 cut(s) 269, 745, 836
TseI GCWGC 2 cut(s) 35, 575
Tsp45I GTSAC 3 cut(s) 269, 745, 836
TspDTI ATGAA 4 cut(s) 134, 368, 368, 479
TspRI CASTG 3 cut(s) 393, 573, 1033
Van91I CCANNNNNTGG 1 cut(s) 380
VpaK11BI GGWCC 2 cut(s) 95, 548
XapI RAATTY 1 cut(s) 897
XmiI GTMKAC 1 cut(s) 499
XmnI GAANNNNTTC 2 cut(s) 359, 708
XspI CTAG 2 cut(s) 284, 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.