Rroxscaffold_4G00277870

No description available

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
Physical Location & Seq
Reverse (-)
1101333 .. 1101682
350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00277870.1

Sequence Viewer

Length: 231 bp
ATGGCCATGAGTACTATCAATATGTCACTGCCTTTCGTCGTTGCGGCTGGAGCTGGGATTTACTTCCTTGACAGAAACCATTACAAACAAAAGGAAACCCTAGGTGGGATTCGAGCATCTATTGAAAATTTCATGACACAAGCCAAGGTGGAGGTGAGCAACACACAAATGCCAAAGTTGGCACCTCAATTTGATGGGTTGGACTCTTTTGAAACCTTGGTTGGTCGTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

76

Amino Acids

8.38

Weight (kDa)

6.54

Isoelectric Point (pI)

46.91

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0018088)

Species Orthologous Gene IDs
fragaria_vesca FvH4_7g32870
malus_domestica MD07G1298600.v1.1
pyrus_communis pycom07g27100
rosa_chinensis RchiOBHm_Chr1g0382821
rosa_roxburghii Rroxscaffold_4G00277870
rosa_rugosa Rorug01G0436500
rosa_samantha Rh1AG461500 Rh1BG418100 Rh1CG432000 Rh1DG450300
rosa_wichuraiana Rw1G041030

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 181
AciI CCGC 1 cut(s) 44
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 1 cut(s) 127
AfaI GTAC 1 cut(s) 13
AfiI CCNNNNNNNGG 1 cut(s) 105
AgsI TTSAA 2 cut(s) 125, 212
AjuI GAANNNNNNNTTGG 1 cut(s) 204
AluBI AGCT 1 cut(s) 53
AluI AGCT 1 cut(s) 53
AoxI GGCC 1 cut(s) 3
ApoI RAATTY 1 cut(s) 127
AspA2I CCTAGG 1 cut(s) 100
AsuHPI GGTGA 1 cut(s) 166
AvrII CCTAGG 1 cut(s) 100
BalI TGGCCA 1 cut(s) 5
BanI GGYRCC 1 cut(s) 181
BccI CCATC 1 cut(s) 188
BfaI CTAG 1 cut(s) 101
BisI GCNGC 1 cut(s) 45
BlnI CCTAGG 1 cut(s) 100
BlsI GCNGC 1 cut(s) 46
BmcAI AGTACT 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 183
BmsI GCATC 1 cut(s) 125
BpmI CTGGAG 1 cut(s) 69
BsaJI CCNNGG 3 cut(s) 100, 144, 216
Bsc4I CCNNNNNNNGG 1 cut(s) 105
BseDI CCNNGG 3 cut(s) 100, 144, 216
BseLI CCNNNNNNNGG 1 cut(s) 105
BseYI CCCAGC 1 cut(s) 53
BshFI GGCC 1 cut(s) 5
BshNI GGYRCC 1 cut(s) 181
BslI CCNNNNNNNGG 1 cut(s) 105
BsnI GGCC 1 cut(s) 5
BspACI CCGC 1 cut(s) 44
BspANI GGCC 1 cut(s) 5
BspHI TCATGA 1 cut(s) 132
BspLI GGNNCC 1 cut(s) 183
BspT107I GGYRCC 1 cut(s) 181
BssECI CCNNGG 3 cut(s) 100, 144, 216
BssT1I CCWWGG 3 cut(s) 100, 144, 216
BstMWI GCNNNNNNNGC 1 cut(s) 50
BsuRI GGCC 1 cut(s) 5
BtsI GCAGTG 1 cut(s) 26
BtsIMutI CAGTG 1 cut(s) 26
CciI TCATGA 1 cut(s) 132
Csp6I GTAC 1 cut(s) 12
CviAII CATG 2 cut(s) 7, 133
CviJI RGCY 4 cut(s) 5, 47, 53, 143
CviKI_1 RGCY 4 cut(s) 5, 47, 53, 143
CviQI GTAC 1 cut(s) 12
EaeI YGGCCR 1 cut(s) 3
Eco130I CCWWGG 3 cut(s) 100, 144, 216
EcoT14I CCWWGG 3 cut(s) 100, 144, 216
ErhI CCWWGG 3 cut(s) 100, 144, 216
FaeI CATG 2 cut(s) 10, 136
FaiI YATR 3 cut(s) 8, 23, 134
FatI CATG 2 cut(s) 6, 132
Fnu4HI GCNGC 1 cut(s) 45
Fsp4HI GCNGC 1 cut(s) 45
FspBI CTAG 1 cut(s) 101
GluI GCNGC 1 cut(s) 45
GsaI CCCAGC 1 cut(s) 57
GsuI CTGGAG 1 cut(s) 69
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 2 cut(s) 10, 136
HinfI GANTC 2 cut(s) 109, 203
HphI GGTGA 1 cut(s) 166
Hpy188III TCNNGA 1 cut(s) 133
Hpy99I CGWCG 1 cut(s) 41
HpyF10VI GCNNNNNNNGC 1 cut(s) 50
Hsp92II CATG 2 cut(s) 10, 136
LmnI GCTCC 1 cut(s) 50
LpnPI CCDG 2 cut(s) 33, 39
LweI GCATC 1 cut(s) 125
MaeI CTAG 1 cut(s) 101
MaeIII GTNAC 1 cut(s) 24
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 127, 188
MluNI TGGCCA 1 cut(s) 5
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 2 cut(s) 145, 195
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MslI CAYNNNNRTG 1 cut(s) 167
Msp20I TGGCCA 1 cut(s) 5
MwoI GCNNNNNNNGC 1 cut(s) 50
NlaIII CATG 2 cut(s) 10, 136
NlaIV GGNNCC 1 cut(s) 183
NmuCI GTSAC 1 cut(s) 24
PagI TCATGA 1 cut(s) 132
PfeI GAWTC 1 cut(s) 109
PkrI GCNGC 1 cut(s) 46
PleI GAGTC 1 cut(s) 197
PpsI GAGTC 1 cut(s) 197
PspFI CCCAGC 1 cut(s) 53
PspN4I GGNNCC 1 cut(s) 183
RsaI GTAC 1 cut(s) 13
RsaNI GTAC 1 cut(s) 12
RseI CAYNNNNRTG 1 cut(s) 167
SatI GCNGC 1 cut(s) 45
ScaI AGTACT 1 cut(s) 13
SchI GAGTC 1 cut(s) 197
SetI ASST 6 cut(s) 55, 106, 150, 156, 187, 218
SfaNI GCATC 1 cut(s) 125
SgeI CNNG 9 cut(s) 19, 60, 66, 80, 113, 125, 145, 152, 157
SmiMI CAYNNNNRTG 1 cut(s) 167
Sse9I AATT 2 cut(s) 127, 188
SsiI CCGC 1 cut(s) 44
SspMI CTAG 1 cut(s) 101
StyI CCWWGG 3 cut(s) 100, 144, 216
TaqI TCGA 1 cut(s) 112
TasI AATT 2 cut(s) 127, 188
TatI WGTACW 1 cut(s) 11
TauI GCSGC 1 cut(s) 47
TfiI GAWTC 1 cut(s) 109
TscAI CASTG 1 cut(s) 33
TseFI GTSAC 1 cut(s) 24
Tsp45I GTSAC 1 cut(s) 24
TspDTI ATGAA 1 cut(s) 121
TspRI CASTG 1 cut(s) 33
XapI RAATTY 1 cut(s) 127
XmaJI CCTAGG 1 cut(s) 100
XspI CTAG 1 cut(s) 101
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.