MD08G1072500.v1.1

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0021148
Physical Location & Seq
Forward (+)
5839360 .. 5840278
919 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1072500.v1.1.491

Sequence Viewer

Length: 264 bp
ATGGGAAATGCCAGGCGGCGGGAAAGTATAGCCTCTTCATCTTCGCAATCAAAGGGCCAGGTTACGGCTTTGACGCAAGAAGTCGCTGGCCTAAGGAGTGAGCTGGCATCGTACAAGTGTCAAATGTTGATACTTATACAAGCCCTCAGTTCCTCCGGAATACATCTCCCCGGTTTTTCTCCACCATCGCCCTCACAGCCCTTCCACACCAAGCAAGCACAACAATCAGGCTCGTCGACCTCCAACCCTGTCCCTAACCAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

88

Amino Acids

9.17

Weight (kDa)

10.02

Isoelectric Point (pI)

92.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021148)

Species Orthologous Gene IDs
malus_domestica MD08G1072500.v1.1 MD15G1294100.v1.1 MD16G1148800.v1.1
pyrus_communis pycom13g25430 pycom17g02620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 236
AccIII TCCGGA 1 cut(s) 155
AciI CCGC 2 cut(s) 16, 19
AfaI GTAC 1 cut(s) 113
AfiI CCNNNNNNNGG 2 cut(s) 18, 64
AjnI CCWGG 2 cut(s) 11, 57
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Aor13HI TCCGGA 1 cut(s) 155
AoxI GGCC 2 cut(s) 55, 88
AspS9I GGNCC 1 cut(s) 55
AsuC2I CCSGG 1 cut(s) 171
AxyI CCTNAGG 1 cut(s) 92
BarI GAAGNNNNNNTAC 2 cut(s) 19, 51
BccI CCATC 1 cut(s) 193
BceAI ACGGC 1 cut(s) 81
BciT130I CCWGG 2 cut(s) 13, 59
BcnI CCSGG 1 cut(s) 171
BisI GCNGC 1 cut(s) 17
BlsI GCNGC 1 cut(s) 18
Bme1390I CCNGG 3 cut(s) 13, 59, 171
BmgT120I GGNCC 1 cut(s) 55
BmrFI CCNGG 3 cut(s) 13, 59, 171
BmsI GCATC 1 cut(s) 116
BpuMI CCSGG 1 cut(s) 171
BsaJI CCNNGG 1 cut(s) 169
BsaWI WCCGGW 1 cut(s) 155
Bsc4I CCNNNNNNNGG 2 cut(s) 18, 64
Bse1I ACTGG 1 cut(s) 259
Bse21I CCTNAGG 1 cut(s) 92
BseAI TCCGGA 1 cut(s) 155
BseBI CCWGG 2 cut(s) 13, 59
BseDI CCNNGG 1 cut(s) 169
BseLI CCNNNNNNNGG 2 cut(s) 18, 64
BseMII CTCAG 1 cut(s) 160
BseNI ACTGG 1 cut(s) 259
BshFI GGCC 2 cut(s) 57, 90
BsiSI CCGG 2 cut(s) 156, 171
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 2 cut(s) 18, 64
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 2 cut(s) 57, 90
Bsp13I TCCGGA 1 cut(s) 155
BspACI CCGC 2 cut(s) 16, 19
BspANI GGCC 2 cut(s) 57, 90
BspCNI CTCAG 1 cut(s) 159
BspEI TCCGGA 1 cut(s) 155
BsrI ACTGG 1 cut(s) 259
BssECI CCNNGG 1 cut(s) 169
Bst2UI CCWGG 2 cut(s) 13, 59
Bst6I CTCTTC 1 cut(s) 40
BstC8I GCNNGC 3 cut(s) 88, 105, 216
BstDEI CTNAG 2 cut(s) 92, 146
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstNI CCWGG 2 cut(s) 13, 59
BstSCI CCNGG 3 cut(s) 11, 57, 169
Bsu36I CCTNAGG 1 cut(s) 92
BsuRI GGCC 2 cut(s) 57, 90
BtgZI GCGATG 1 cut(s) 171
Cac8I GCNNGC 3 cut(s) 88, 105, 216
Cfr13I GGNCC 1 cut(s) 55
CseI GACGC 1 cut(s) 82
Csp6I GTAC 1 cut(s) 112
CviJI RGCY 8 cut(s) 32, 57, 68, 90, 103, 143, 199, 231
CviKI_1 RGCY 8 cut(s) 32, 57, 68, 90, 103, 143, 199, 231
CviQI GTAC 1 cut(s) 112
DdeI CTNAG 2 cut(s) 92, 146
Eam1104I CTCTTC 1 cut(s) 40
EarI CTCTTC 1 cut(s) 40
Eco81I CCTNAGG 1 cut(s) 92
EcoRII CCWGG 2 cut(s) 11, 57
FaiI YATR 2 cut(s) 29, 137
FaqI GGGAC 1 cut(s) 236
FauI CCCGC 1 cut(s) 12
FblI GTMKAC 1 cut(s) 236
Fnu4HI GCNGC 1 cut(s) 17
Fsp4HI GCNGC 1 cut(s) 17
GluI GCNGC 1 cut(s) 17
HaeIII GGCC 2 cut(s) 57, 90
HapII CCGG 2 cut(s) 156, 171
HgaI GACGC 1 cut(s) 82
HincII GTYRAC 1 cut(s) 237
HindII GTYRAC 1 cut(s) 237
HpaII CCGG 2 cut(s) 156, 171
Hpy166II GTNNAC 1 cut(s) 237
Hpy188III TCNNGA 1 cut(s) 156
Hpy8I GTNNAC 1 cut(s) 237
Hpy99I CGWCG 1 cut(s) 238
HpyAV CCTTC 1 cut(s) 211
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
HpyF3I CTNAG 2 cut(s) 92, 146
Kpn2I TCCGGA 1 cut(s) 155
LpnPI CCDG 8 cut(s) 25, 44, 71, 72, 89, 169, 184, 213
LweI GCATC 1 cut(s) 116
MaeIII GTNAC 1 cut(s) 61
MboII GAAGA 2 cut(s) 27, 33
MnlI CCTC 5 cut(s) 43, 155, 163, 202, 250
MroI TCCGGA 1 cut(s) 155
MspI CCGG 2 cut(s) 156, 171
MspR9I CCNGG 3 cut(s) 13, 59, 171
MvaI CCWGG 2 cut(s) 13, 59
MwoI GCNNNNNNNGC 1 cut(s) 196
NciI CCSGG 1 cut(s) 171
PkrI GCNGC 1 cut(s) 18
Psp6I CCWGG 2 cut(s) 11, 57
PspGI CCWGG 2 cut(s) 11, 57
PspPI GGNCC 1 cut(s) 55
RsaI GTAC 1 cut(s) 113
RsaNI GTAC 1 cut(s) 112
SalI GTCGAC 1 cut(s) 235
SatI GCNGC 1 cut(s) 17
Sau96I GGNCC 1 cut(s) 55
ScrFI CCNGG 3 cut(s) 13, 59, 171
SetI ASST 3 cut(s) 63, 105, 242
SfaNI GCATC 1 cut(s) 116
SsiI CCGC 2 cut(s) 16, 19
StyD4I CCNGG 3 cut(s) 11, 57, 169
TaqI TCGA 1 cut(s) 236
TauI GCSGC 1 cut(s) 19
TspDTI ATGAA 1 cut(s) 27
XmiI GTMKAC 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.