pycom17g02620

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr17
OG0021148
Physical Location & Seq
Forward (+)
1747924 .. 1748583
660 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom17g02620.1

Sequence Viewer

Length: 474 bp
ATGGAGGCGAGGCGGCAGGGGGGTTCAAAATTCTCGGAGATCAATGTCCTTGGAGACGTTTATGTACGACCCGGGGATGAGTTGGCCCAGTCCCTTCATGGAAACGACGATGATGGAGAAGAGGCAGTTGGTTCTTCAGGAGGTTGCCTCTCAGCTCCTCCCGAGACTCTACTCAAGTCTTTGGATCCCCCCGAGGATGCAGGGTTTCAGATCATTACAGAAACCTTGGATCAGAGACCGGGGACGTATTGTAGGGGGATGGGGAATGCCCGACGGCAGAAACCTAGAACCTCTTCCTCATCGCATTCGAAGAGCGAGGTGGAAACTTTGACAACAGAGGTGGTCGGGCGTAAGACTGAGCTCGCCTCATATAAGAGACATATGTTACTGATCGTACAAGCCCACAGTCAATCCGGCATTCCCGGATACCCATCCCCTGTAGATTACTCCGAATTTCCAGCCGCATGCGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

158

Amino Acids

16.93

Weight (kDa)

5.12

Isoelectric Point (pI)

59.38

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021148)

Species Orthologous Gene IDs
malus_domestica MD08G1072500.v1.1 MD15G1294100.v1.1 MD16G1148800.v1.1
pyrus_communis pycom13g25430 pycom17g02620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 13, 462
AclWI GGATC 3 cut(s) 179, 192, 237
AcsI RAATTY 2 cut(s) 29, 452
AcuI CTGAAG 1 cut(s) 120
AfaI GTAC 2 cut(s) 66, 396
AgsI TTSAA 1 cut(s) 27
AjuI GAANNNNNNNTTGG 2 cut(s) 111, 143
AluBI AGCT 2 cut(s) 155, 361
AluI AGCT 2 cut(s) 155, 361
Alw21I GWGCWC 1 cut(s) 363
Alw26I GTCTC 4 cut(s) 48, 158, 229, 370
AlwI GGATC 3 cut(s) 179, 192, 237
Ama87I CYCGRG 3 cut(s) 71, 161, 191
AoxI GGCC 1 cut(s) 84
ApoI RAATTY 2 cut(s) 29, 452
Asp700I GAANNNNTTC 1 cut(s) 292
AspS9I GGNCC 1 cut(s) 85
AsuC2I CCSGG 4 cut(s) 72, 73, 240, 423
AsuII TTCGAA 1 cut(s) 308
AvaI CYCGRG 3 cut(s) 71, 161, 191
BamHI GGATCC 1 cut(s) 184
BanII GRGCYC 1 cut(s) 363
Bbv12I GWGCWC 1 cut(s) 363
BccI CCATC 3 cut(s) 107, 253, 439
BceAI ACGGC 1 cut(s) 290
BciVI GTATCC 1 cut(s) 419
BcnI CCSGG 4 cut(s) 72, 73, 240, 423
BcoDI GTCTC 4 cut(s) 48, 158, 229, 370
BfaI CTAG 1 cut(s) 285
BfmI CTRYAG 1 cut(s) 438
BfuI GTATCC 1 cut(s) 419
BisI GCNGC 2 cut(s) 14, 462
BlsI GCNGC 2 cut(s) 15, 463
Bme1390I CCNGG 4 cut(s) 72, 73, 240, 423
BmeT110I CYCGRG 3 cut(s) 71, 161, 191
BmgT120I GGNCC 1 cut(s) 85
BmiI GGNNCC 1 cut(s) 186
BmrFI CCNGG 4 cut(s) 72, 73, 240, 423
BmrI ACTGGG 1 cut(s) 82
BmsI GCATC 1 cut(s) 187
BmuI ACTGGG 1 cut(s) 82
BplI GAGNNNNNCTC 4 cut(s) 132, 164, 350, 382
Bpu14I TTCGAA 1 cut(s) 308
BpuEI CTTGAG 1 cut(s) 158
BpuMI CCSGG 4 cut(s) 72, 73, 240, 423
BsaBI GATNNNNATC 1 cut(s) 430
BsaI GGTCTC 1 cut(s) 229
BsaJI CCNNGG 6 cut(s) 49, 71, 72, 192, 225, 239
Bse1I ACTGG 1 cut(s) 88
Bse8I GATNNNNATC 1 cut(s) 430
BseDI CCNNGG 6 cut(s) 49, 71, 72, 192, 225, 239
BseGI GGATG 4 cut(s) 82, 202, 264, 431
BseJI GATNNNNATC 1 cut(s) 430
BseMII CTCAG 2 cut(s) 165, 348
BseNI ACTGG 1 cut(s) 88
BseRI GAGGAG 1 cut(s) 147
BshFI GGCC 1 cut(s) 86
BsiHKAI GWGCWC 1 cut(s) 363
BsiHKCI CYCGRG 3 cut(s) 71, 161, 191
BsiSI CCGG 4 cut(s) 72, 239, 414, 423
BslFI GGGAC 2 cut(s) 76, 256
BsmAI GTCTC 4 cut(s) 48, 158, 229, 370
BsmBI CGTCTC 1 cut(s) 48
BsmFI GGGAC 2 cut(s) 76, 256
BsmI GAATGC 3 cut(s) 271, 304, 417
BsnI GGCC 1 cut(s) 86
Bso31I GGTCTC 1 cut(s) 229
BsoBI CYCGRG 3 cut(s) 71, 161, 191
Bsp119I TTCGAA 1 cut(s) 308
Bsp1286I GDGCHC 1 cut(s) 363
Bsp143I GATC 5 cut(s) 39, 184, 210, 229, 390
BspACI CCGC 2 cut(s) 13, 462
BspANI GGCC 1 cut(s) 86
BspCNI CTCAG 2 cut(s) 164, 349
BspLI GGNNCC 1 cut(s) 186
BspPI GGATC 3 cut(s) 179, 192, 237
BspQI GCTCTTC 1 cut(s) 305
BspT104I TTCGAA 1 cut(s) 308
BspTNI GGTCTC 1 cut(s) 229
BsrI ACTGG 1 cut(s) 88
BssECI CCNNGG 6 cut(s) 49, 71, 72, 192, 225, 239
BssMI GATC 5 cut(s) 39, 184, 210, 229, 390
BssT1I CCWWGG 2 cut(s) 49, 225
Bst4CI ACNGT 1 cut(s) 407
Bst6I CTCTTC 3 cut(s) 114, 298, 305
BstBI TTCGAA 1 cut(s) 308
BstC8I GCNNGC 2 cut(s) 363, 466
BstDEI CTNAG 2 cut(s) 151, 357
BstF5I GGATG 4 cut(s) 82, 202, 264, 431
BstKTI GATC 5 cut(s) 42, 187, 213, 232, 393
BstMAI GTCTC 4 cut(s) 48, 158, 229, 370
BstMBI GATC 5 cut(s) 39, 184, 210, 229, 390
BstNSI RCATGY 1 cut(s) 468
BstSCI CCNGG 4 cut(s) 70, 71, 238, 421
BstSFI CTRYAG 1 cut(s) 438
BstX2I RGATCY 1 cut(s) 184
BstYI RGATCY 1 cut(s) 184
BsuI GTATCC 1 cut(s) 419
BsuRI GGCC 1 cut(s) 86
BtgZI GCGATG 1 cut(s) 285
BtsCI GGATG 4 cut(s) 82, 202, 264, 431
Cac8I GCNNGC 2 cut(s) 363, 466
Cfr13I GGNCC 1 cut(s) 85
Cfr9I CCCGGG 1 cut(s) 71
Csp6I GTAC 2 cut(s) 65, 395
CspCI CAANNNNNGTGG 2 cut(s) 321, 356
CviAII CATG 2 cut(s) 98, 465
CviJI RGCY 5 cut(s) 86, 155, 361, 401, 461
CviKI_1 RGCY 5 cut(s) 86, 155, 361, 401, 461
CviQI GTAC 2 cut(s) 65, 395
DdeI CTNAG 2 cut(s) 151, 357
DpnI GATC 5 cut(s) 41, 186, 212, 231, 392
DpnII GATC 5 cut(s) 39, 184, 210, 229, 390
Eam1104I CTCTTC 3 cut(s) 114, 298, 305
EarI CTCTTC 3 cut(s) 114, 298, 305
Ecl136II GAGCTC 1 cut(s) 361
Eco130I CCWWGG 2 cut(s) 49, 225
Eco24I GRGCYC 1 cut(s) 363
Eco31I GGTCTC 1 cut(s) 229
Eco53kI GAGCTC 1 cut(s) 361
Eco57I CTGAAG 1 cut(s) 120
Eco88I CYCGRG 3 cut(s) 71, 161, 191
EcoICRI GAGCTC 1 cut(s) 361
EcoT14I CCWWGG 2 cut(s) 49, 225
EcoT38I GRGCYC 1 cut(s) 363
ErhI CCWWGG 2 cut(s) 49, 225
Esp3I CGTCTC 1 cut(s) 48
FaeI CATG 2 cut(s) 101, 468
FaiI YATR 7 cut(s) 63, 99, 370, 372, 381, 383, 466
FaqI GGGAC 2 cut(s) 76, 256
FatI CATG 2 cut(s) 97, 464
FauNDI CATATG 1 cut(s) 381
Fnu4HI GCNGC 2 cut(s) 14, 462
FokI GGATG 4 cut(s) 89, 209, 271, 418
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 2 cut(s) 14, 462
FspBI CTAG 1 cut(s) 285
GluI GCNGC 2 cut(s) 14, 462
HaeIII GGCC 1 cut(s) 86
HapII CCGG 4 cut(s) 72, 239, 414, 423
Hin1II CATG 2 cut(s) 101, 468
HinfI GANTC 1 cut(s) 166
HpaII CCGG 4 cut(s) 72, 239, 414, 423
Hpy188I TCNGA 4 cut(s) 37, 210, 234, 451
Hpy188III TCNNGA 2 cut(s) 138, 161
Hpy99I CGWCG 2 cut(s) 110, 276
HpyAV CCTTC 1 cut(s) 104
HpyCH4III ACNGT 1 cut(s) 407
HpyCH4IV ACGT 2 cut(s) 57, 245
HpyCH4V TGCA 1 cut(s) 200
HpyF3I CTNAG 2 cut(s) 151, 357
HpySE526I ACGT 2 cut(s) 57, 245
Hsp92II CATG 2 cut(s) 101, 468
Kzo9I GATC 5 cut(s) 39, 184, 210, 229, 390
LguI GCTCTTC 1 cut(s) 305
LmnI GCTCC 1 cut(s) 160
LpnPI CCDG 9 cut(s) 2, 85, 101, 123, 186, 252, 427, 436, 450
LweI GCATC 1 cut(s) 187
MaeI CTAG 1 cut(s) 285
MaeII ACGT 2 cut(s) 57, 245
MaeIII GTNAC 1 cut(s) 384
MalI GATC 5 cut(s) 41, 186, 212, 231, 392
MboI GATC 5 cut(s) 39, 184, 210, 229, 390
MboII GAAGA 4 cut(s) 126, 131, 285, 322
MflI RGATCY 1 cut(s) 184
MhlI GDGCHC 1 cut(s) 363
MluCI AATT 2 cut(s) 29, 452
MlyI GAGTC 1 cut(s) 160
MroXI GAANNNNTTC 1 cut(s) 292
MslI CAYNNNNRTG 1 cut(s) 469
MspI CCGG 4 cut(s) 72, 239, 414, 423
MspR9I CCNGG 4 cut(s) 72, 73, 240, 423
Mva1269I GAATGC 3 cut(s) 271, 304, 417
NciI CCSGG 4 cut(s) 72, 73, 240, 423
NdeI CATATG 1 cut(s) 381
NdeII GATC 5 cut(s) 39, 184, 210, 229, 390
NlaIII CATG 2 cut(s) 101, 468
NlaIV GGNNCC 1 cut(s) 186
NspI RCATGY 1 cut(s) 468
NspV TTCGAA 1 cut(s) 308
PaeI GCATGC 1 cut(s) 468
PciSI GCTCTTC 1 cut(s) 305
PctI GAATGC 3 cut(s) 271, 304, 417
PdmI GAANNNNTTC 1 cut(s) 292
PfoI TCCNGGA 1 cut(s) 421
PkrI GCNGC 2 cut(s) 15, 463
PleI GAGTC 1 cut(s) 160
PpsI GAGTC 1 cut(s) 160
Psp124BI GAGCTC 1 cut(s) 363
PspN4I GGNNCC 1 cut(s) 186
PspPI GGNCC 1 cut(s) 85
PsuI RGATCY 1 cut(s) 184
RsaI GTAC 2 cut(s) 66, 396
RsaNI GTAC 2 cut(s) 65, 395
RseI CAYNNNNRTG 1 cut(s) 469
SacI GAGCTC 1 cut(s) 363
SapI GCTCTTC 1 cut(s) 305
SatI GCNGC 2 cut(s) 14, 462
Sau3AI GATC 5 cut(s) 39, 184, 210, 229, 390
Sau96I GGNCC 1 cut(s) 85
SchI GAGTC 1 cut(s) 160
ScrFI CCNGG 4 cut(s) 72, 73, 240, 423
SduI GDGCHC 1 cut(s) 363
SfaNI GCATC 1 cut(s) 187
SfcI CTRYAG 1 cut(s) 438
SfuI TTCGAA 1 cut(s) 308
SmaI CCCGGG 1 cut(s) 73
SmiMI CAYNNNNRTG 1 cut(s) 469
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
SphI GCATGC 1 cut(s) 468
Sse9I AATT 2 cut(s) 29, 452
SsiI CCGC 2 cut(s) 13, 462
SspMI CTAG 1 cut(s) 285
SstI GAGCTC 1 cut(s) 363
StyD4I CCNGG 4 cut(s) 70, 71, 238, 421
StyI CCWWGG 2 cut(s) 49, 225
TaaI ACNGT 1 cut(s) 407
TaiI ACGT 2 cut(s) 60, 248
TaqI TCGA 1 cut(s) 308
TasI AATT 2 cut(s) 29, 452
TauI GCSGC 2 cut(s) 16, 464
TspDTI ATGAA 1 cut(s) 86
TspMI CCCGGG 1 cut(s) 71
XapI RAATTY 2 cut(s) 29, 452
XceI RCATGY 1 cut(s) 468
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
XmaI CCCGGG 1 cut(s) 71
XmnI GAANNNNTTC 1 cut(s) 292
XspI CTAG 1 cut(s) 285
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.