MD16G1148800.v1.1

Plant transposase (Ptta/En/Spm family)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr16
OG0021148
Physical Location & Seq
Reverse (-)
11704211 .. 11705294
1084 bp
Loading structure...
UTR
Exon/CDS
Intron
MD16G1148800.v1.1.491

Sequence Viewer

Length: 225 bp
ATGGGAAATGCCAGGCGATGGGAGAGTAGAGCATCGTTATCCTCGCAGTCAAAGGGCCATGTTACGACTTTGACGCAAGAAGTCGCTAGCCTAAGGAGTGAGCTGGCATTGTACAAGTCTCAAATGTTGATGCTTGTACAAGCCCTTAGTTCCTCCGGAATACATCTCCCCAGTTTTTCTGCACCATCGCTCTCACAGCCTTTCCACACTGAGCAAGCACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transposase_24

Protein Analysis

75

Amino Acids

8.09

Weight (kDa)

9.69

Isoelectric Point (pI)

81.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021148)

Species Orthologous Gene IDs
malus_domestica MD08G1072500.v1.1 MD15G1294100.v1.1 MD16G1148800.v1.1
pyrus_communis pycom13g25430 pycom17g02620

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 18
AccIII TCCGGA 1 cut(s) 155
AfaI GTAC 2 cut(s) 113, 138
AfiI CCNNNNNNNGG 1 cut(s) 18
AjnI CCWGG 1 cut(s) 11
AluBI AGCT 1 cut(s) 103
AluI AGCT 1 cut(s) 103
Alw26I GTCTC 1 cut(s) 123
Aor13HI TCCGGA 1 cut(s) 155
AoxI GGCC 1 cut(s) 55
AspS9I GGNCC 1 cut(s) 55
AsuNHI GCTAGC 1 cut(s) 86
AxyI CCTNAGG 1 cut(s) 92
BccI CCATC 2 cut(s) 12, 193
BciT130I CCWGG 1 cut(s) 13
BcoDI GTCTC 1 cut(s) 123
BfaI CTAG 1 cut(s) 87
Bme1390I CCNGG 1 cut(s) 13
BmgT120I GGNCC 1 cut(s) 55
BmrFI CCNGG 1 cut(s) 13
BmrI ACTGGG 1 cut(s) 165
BmsI GCATC 2 cut(s) 41, 120
BmtI GCTAGC 1 cut(s) 90
BmuI ACTGGG 1 cut(s) 165
BsaWI WCCGGW 1 cut(s) 155
Bsc4I CCNNNNNNNGG 1 cut(s) 18
Bse1I ACTGG 1 cut(s) 171
Bse21I CCTNAGG 1 cut(s) 92
BseAI TCCGGA 1 cut(s) 155
BseBI CCWGG 1 cut(s) 13
BseLI CCNNNNNNNGG 1 cut(s) 18
BseMII CTCAG 1 cut(s) 201
BseNI ACTGG 1 cut(s) 171
BsgI GTGCAG 1 cut(s) 165
BshFI GGCC 1 cut(s) 57
BsiSI CCGG 1 cut(s) 156
BslI CCNNNNNNNGG 1 cut(s) 18
BsmAI GTCTC 1 cut(s) 123
BsnI GGCC 1 cut(s) 57
Bsp13I TCCGGA 1 cut(s) 155
Bsp1407I TGTACA 2 cut(s) 111, 136
BspANI GGCC 1 cut(s) 57
BspCNI CTCAG 1 cut(s) 202
BspEI TCCGGA 1 cut(s) 155
BspOI GCTAGC 1 cut(s) 90
BsrGI TGTACA 2 cut(s) 111, 136
BsrI ACTGG 1 cut(s) 171
Bst2UI CCWGG 1 cut(s) 13
Bst4CI ACNGT 1 cut(s) 222
BstAUI TGTACA 2 cut(s) 111, 136
BstC8I GCNNGC 3 cut(s) 88, 105, 216
BstDEI CTNAG 3 cut(s) 92, 146, 210
BstMAI GTCTC 1 cut(s) 123
BstMWI GCNNNNNNNGC 1 cut(s) 196
BstNI CCWGG 1 cut(s) 13
BstSCI CCNGG 1 cut(s) 11
Bsu36I CCTNAGG 1 cut(s) 92
BsuRI GGCC 1 cut(s) 57
BtgZI GCGATG 2 cut(s) 31, 171
BtsIMutI CAGTG 1 cut(s) 207
Cac8I GCNNGC 3 cut(s) 88, 105, 216
Cfr13I GGNCC 1 cut(s) 55
CseI GACGC 1 cut(s) 82
Csp6I GTAC 2 cut(s) 112, 137
CviAII CATG 1 cut(s) 59
CviJI RGCY 5 cut(s) 57, 90, 103, 143, 199
CviKI_1 RGCY 5 cut(s) 57, 90, 103, 143, 199
CviQI GTAC 2 cut(s) 112, 137
DdeI CTNAG 3 cut(s) 92, 146, 210
Eco81I CCTNAGG 1 cut(s) 92
EcoRII CCWGG 1 cut(s) 11
FaeI CATG 1 cut(s) 62
FaiI YATR 1 cut(s) 60
FatI CATG 1 cut(s) 58
FspBI CTAG 1 cut(s) 87
HaeIII GGCC 1 cut(s) 57
HapII CCGG 1 cut(s) 156
HgaI GACGC 1 cut(s) 82
Hin1II CATG 1 cut(s) 62
HpaII CCGG 1 cut(s) 156
Hpy188III TCNNGA 1 cut(s) 156
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4V TGCA 1 cut(s) 182
HpyF10VI GCNNNNNNNGC 1 cut(s) 196
HpyF3I CTNAG 3 cut(s) 92, 146, 210
Hsp92II CATG 1 cut(s) 62
Kpn2I TCCGGA 1 cut(s) 155
LpnPI CCDG 4 cut(s) 25, 89, 169, 184
LweI GCATC 2 cut(s) 41, 120
MaeI CTAG 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 61
MnlI CCTC 2 cut(s) 52, 163
MroI TCCGGA 1 cut(s) 155
MspI CCGG 1 cut(s) 156
MspR9I CCNGG 1 cut(s) 13
MvaI CCWGG 1 cut(s) 13
MwoI GCNNNNNNNGC 1 cut(s) 196
NheI GCTAGC 1 cut(s) 86
NlaIII CATG 1 cut(s) 62
PflMI CCANNNNNTGG 1 cut(s) 18
Psp6I CCWGG 1 cut(s) 11
PspGI CCWGG 1 cut(s) 11
PspPI GGNCC 1 cut(s) 55
RsaI GTAC 2 cut(s) 113, 138
RsaNI GTAC 2 cut(s) 112, 137
Sau96I GGNCC 1 cut(s) 55
ScrFI CCNGG 1 cut(s) 13
SetI ASST 1 cut(s) 105
SfaNI GCATC 2 cut(s) 41, 120
SspMI CTAG 1 cut(s) 87
StyD4I CCNGG 1 cut(s) 11
TaaI ACNGT 1 cut(s) 222
TatI WGTACW 2 cut(s) 111, 136
TscAI CASTG 1 cut(s) 214
TspRI CASTG 1 cut(s) 214
Van91I CCANNNNNTGG 1 cut(s) 18
XspI CTAG 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.