MD08G1147800.v1.1

EG45-like domain containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0021145
Physical Location & Seq
Forward (+)
14887927 .. 14888626
700 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1147800.v1.1.491

Sequence Viewer

Length: 396 bp
ATGAGACTCTTATTCATGTCAATAGTGTTAAGCTTATTATGCAGAGAACTAAGGCTCGTTTCCAGTGATATCGGCACAGCAACGTCTTACGGTCCTCCTTATATACCTACAAAGTGCTTTGGAAGTAGGCAAGACCAGTTCCCTCCGGGGAATCTGTTTGTGGCGGTGAGTGAAGGGTTGTGGGACAATGGTGCTGCGTGTGGAAGGCGGTATAGACTGAGGTGCCTGAGTGGACGTAATAAGCCCTGCAAGGGTGGTGCTACCGTGGACGTGAAGGTGGTTGATCTTTGTCGAGATTCAACCTGCCCTTCTACCGTAGTCATGTCAACTGATGCTTTTGCAGCCATCTCACACTCTCCTTCTACAAGAATCAACGTCGAATATGTCCAGATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DPBB_1

Protein Analysis

132

Amino Acids

14.28

Weight (kDa)

8.96

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DPBB_1 PF03330 55 - 128 2.3e-10 Lytic transglycolase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021145)

Species Orthologous Gene IDs
malus_domestica MD08G1147800.v1.1 MD15G1123700.v1.1
prunus_persica Prupe.1G479000_v2.0.a1
pyrus_communis pycom08g12460 pycom15g11140

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 311
AccB1I GGYRCC 1 cut(s) 222
AciI CCGC 2 cut(s) 164, 208
AfiI CCNNNNNNNGG 1 cut(s) 251
AgsI TTSAA 1 cut(s) 300
AjiI CACGTC 1 cut(s) 271
AluBI AGCT 1 cut(s) 33
AluI AGCT 1 cut(s) 33
ApeKI GCWGC 2 cut(s) 194, 341
AspS9I GGNCC 1 cut(s) 92
AsuC2I CCSGG 1 cut(s) 147
AsuHPI GGTGA 1 cut(s) 178
AvaII GGWCC 1 cut(s) 92
BanI GGYRCC 1 cut(s) 222
BbvI GCAGC 2 cut(s) 181, 353
BccI CCATC 1 cut(s) 353
BcnI CCSGG 1 cut(s) 147
BfuAI ACCTGC 1 cut(s) 311
BisI GCNGC 2 cut(s) 195, 342
BlsI GCNGC 2 cut(s) 196, 343
Bme1390I CCNGG 1 cut(s) 147
Bme18I GGWCC 1 cut(s) 92
BmgBI CACGTC 1 cut(s) 271
BmgT120I GGNCC 1 cut(s) 92
BmiI GGNNCC 1 cut(s) 224
BmrFI CCNGG 1 cut(s) 147
BmsI GCATC 1 cut(s) 322
BpuMI CCSGG 1 cut(s) 147
BsaJI CCNNGG 2 cut(s) 146, 264
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse1I ACTGG 2 cut(s) 63, 136
BseDI CCNNGG 2 cut(s) 146, 264
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMII CTCAG 2 cut(s) 209, 218
BseNI ACTGG 2 cut(s) 63, 136
BseXI GCAGC 2 cut(s) 181, 353
BshNI GGYRCC 1 cut(s) 222
BsiSI CCGG 1 cut(s) 146
BslFI GGGAC 1 cut(s) 197
BslI CCNNNNNNNGG 1 cut(s) 251
BsmFI GGGAC 1 cut(s) 197
Bsp143I GATC 1 cut(s) 283
BspACI CCGC 2 cut(s) 164, 208
BspCNI CTCAG 2 cut(s) 210, 219
BspLI GGNNCC 1 cut(s) 224
BspMI ACCTGC 1 cut(s) 311
BspT107I GGYRCC 1 cut(s) 222
BsrI ACTGG 2 cut(s) 63, 136
BssECI CCNNGG 2 cut(s) 146, 264
BssMI GATC 1 cut(s) 283
Bst4CI ACNGT 3 cut(s) 92, 265, 316
BstDEI CTNAG 3 cut(s) 50, 218, 227
BstDSI CCRYGG 1 cut(s) 264
BstKTI GATC 1 cut(s) 286
BstMBI GATC 1 cut(s) 283
BstMWI GCNNNNNNNGC 2 cut(s) 39, 341
BstSCI CCNGG 1 cut(s) 145
BstV1I GCAGC 2 cut(s) 181, 353
BtgI CCRYGG 1 cut(s) 264
BtrI CACGTC 1 cut(s) 271
BtsIMutI CAGTG 1 cut(s) 70
BveI ACCTGC 1 cut(s) 311
Cfr13I GGNCC 1 cut(s) 92
CviAII CATG 2 cut(s) 16, 322
CviJI RGCY 4 cut(s) 33, 55, 244, 344
CviKI_1 RGCY 4 cut(s) 33, 55, 244, 344
DdeI CTNAG 3 cut(s) 50, 218, 227
DpnI GATC 1 cut(s) 285
DpnII GATC 1 cut(s) 283
Eco32I GATATC 1 cut(s) 70
Eco47I GGWCC 1 cut(s) 92
EcoRV GATATC 1 cut(s) 70
FaeI CATG 2 cut(s) 19, 325
FaiI YATR 8 cut(s) 17, 40, 102, 104, 213, 323, 384, 394
FaqI GGGAC 1 cut(s) 197
FatI CATG 2 cut(s) 15, 321
Fnu4HI GCNGC 2 cut(s) 195, 342
Fsp4HI GCNGC 2 cut(s) 195, 342
GluI GCNGC 2 cut(s) 195, 342
HapII CCGG 1 cut(s) 146
Hin1II CATG 2 cut(s) 19, 325
HincII GTYRAC 1 cut(s) 327
HindII GTYRAC 1 cut(s) 327
HindIII AAGCTT 1 cut(s) 31
HinfI GANTC 4 cut(s) 6, 151, 296, 369
HpaII CCGG 1 cut(s) 146
HphI GGTGA 1 cut(s) 178
Hpy166II GTNNAC 3 cut(s) 233, 268, 327
Hpy188III TCNNGA 2 cut(s) 293, 388
Hpy8I GTNNAC 3 cut(s) 233, 268, 327
Hpy99I CGWCG 1 cut(s) 380
HpyAV CCTTC 5 cut(s) 167, 198, 268, 318, 369
HpyCH4III ACNGT 3 cut(s) 92, 265, 316
HpyCH4IV ACGT 4 cut(s) 83, 235, 270, 375
HpyCH4V TGCA 3 cut(s) 42, 249, 341
HpyF10VI GCNNNNNNNGC 2 cut(s) 39, 341
HpyF3I CTNAG 3 cut(s) 50, 218, 227
HpySE526I ACGT 4 cut(s) 83, 235, 270, 375
Hsp92II CATG 2 cut(s) 19, 325
Kzo9I GATC 1 cut(s) 283
LpnPI CCDG 6 cut(s) 76, 149, 159, 239, 259, 316
Lsp1109I GCAGC 2 cut(s) 181, 353
LweI GCATC 1 cut(s) 322
MaeII ACGT 4 cut(s) 83, 235, 270, 375
MalI GATC 1 cut(s) 285
MboI GATC 1 cut(s) 283
MnlI CCTC 3 cut(s) 105, 153, 213
MseI TTAA 1 cut(s) 29
MspI CCGG 1 cut(s) 146
MspR9I CCNGG 1 cut(s) 147
MwoI GCNNNNNNNGC 2 cut(s) 39, 341
NciI CCSGG 1 cut(s) 147
NdeII GATC 1 cut(s) 283
NlaIII CATG 2 cut(s) 19, 325
NlaIV GGNNCC 1 cut(s) 224
PfeI GAWTC 3 cut(s) 151, 296, 369
PkrI GCNGC 2 cut(s) 196, 343
PspN4I GGNNCC 1 cut(s) 224
PspPI GGNCC 1 cut(s) 92
SaqAI TTAA 1 cut(s) 29
SatI GCNGC 2 cut(s) 195, 342
Sau3AI GATC 1 cut(s) 283
Sau96I GGNCC 1 cut(s) 92
ScrFI CCNGG 1 cut(s) 147
SetI ASST 9 cut(s) 35, 86, 109, 224, 238, 273, 279, 305, 378
SfaNI GCATC 1 cut(s) 322
SinI GGWCC 1 cut(s) 92
SsiI CCGC 2 cut(s) 164, 208
StyD4I CCNGG 1 cut(s) 145
TaaI ACNGT 3 cut(s) 92, 265, 316
TaiI ACGT 4 cut(s) 86, 238, 273, 378
TaqI TCGA 2 cut(s) 292, 378
TfiI GAWTC 3 cut(s) 151, 296, 369
Tru1I TTAA 1 cut(s) 29
Tru9I TTAA 1 cut(s) 29
TscAI CASTG 1 cut(s) 70
TseI GCWGC 2 cut(s) 194, 341
TspDTI ATGAA 1 cut(s) 4
TspRI CASTG 1 cut(s) 70
VpaK11BI GGWCC 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.